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Aliases for SNORA14A Gene

Subcategory (RNA class) for SNORA14A Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA14A Gene

  • Small Nucleolar RNA, H/ACA Box 14A 2 3 5
  • ACA14a SnoRNA 3
  • ACA14a 3

External Ids for SNORA14A Gene

Previous GeneCards Identifiers for SNORA14A Gene

  • GC07P075411
  • GC07P075573
  • GC07P070659

Summaries for SNORA14A Gene

Entrez Gene Summary for SNORA14A Gene

  • Small nucleolar RNAs (snoRNAs) are 60-150 nt long non-coding RNAs, and include two groups: C/D box snoRNAs and H/ACA box snoRNAs. The C/D box snoRNAs are guides for the 2'-O-ribose methylation of rRNAs or snRNAs. The H/ACA box snoRNAs are guides for the isomerization of uridine residues into pseudouridine. This gene belongs to the group of the H/ACA box snoRNAs, and functions in 18S rRNA pseudouridylation at position U966. The gene duplication generates a 91% identical copy on chromosome 1. [provided by RefSeq, Oct 2008]

GeneCards Summary for SNORA14A Gene

SNORA14A (Small Nucleolar RNA, H/ACA Box 14A) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA14A Gene

Genomics for SNORA14A Gene

Regulatory Elements for SNORA14A Gene

Enhancers for SNORA14A Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07G075964 1.7 FANTOM5 Ensembl ENCODE dbSUPER 11.8 +23.8 23763 5.4 HDAC1 GATA2 ZNF366 ETV6 FOS CREM JUNB USF2 ZEB2 REST STYXL1 POR SNORA14A CCL24 SRRM3 ENSG00000230882 MDH2 ZP3 GC07P075946 TMEM120A
GH07G076008 1.6 Ensembl ENCODE dbSUPER 11.9 +66.9 66869 4.6 SIN3A ZNF2 ZBTB7B ZNF766 ZNF207 ZNF263 REST TBX21 SMARCA4 GLIS1 STYXL1 STAG3L1 NSUN5P1 DTX2P1 MDH2 ENSG00000230882 SNORA14A POR RHBDD2 CCL24
GH07G075971 1.5 FANTOM5 Ensembl ENCODE dbSUPER 12.4 +28.3 28339 1.5 CTCF ESRRA NR2F1 CEBPB ZNF2 RAD21 NR2F2 JUND ATF3 IKZF1 STYXL1 SNORA14A POR CCL26 CCL24 SRRM3 ENSG00000230882 TMEM120A GC07P075946
GH07G075913 1.4 ENCODE dbSUPER 13 -25.0 -25023 9.5 MLX CREB3L1 DMAP1 YY1 ZNF143 SP3 SSRP1 GLIS1 RCOR2 NBN LOC100133091 RHBDD2 SNORA14A CCL26 POR ZP3 RPL7L1P3 MIR4651
GH07G075905 1.3 Ensembl ENCODE 12 -37.1 -37088 3.0 FOXA2 PKNOX1 MLX ARID4B SIN3A DMAP1 YY1 SLC30A9 ZNF766 FOS SNORA14A CCL26 CCL24 SRRM3 UPK3B ZP3 MIR4651 POR
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORA14A on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORA14A Gene

Chromosome:
7
Start:
75,943,782 bp from pter
End:
75,943,916 bp from pter
Size:
135 bases
Orientation:
Plus strand

Genomic View for SNORA14A Gene

Genes around SNORA14A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA14A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA14A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA14A Gene

Proteins for SNORA14A Gene

Post-translational modifications for SNORA14A Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA14A Gene

Domains & Families for SNORA14A Gene

Gene Families for SNORA14A Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA14A: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA14A Gene

Function for SNORA14A Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA14A Gene

Localization for SNORA14A Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORA14A Gene

Pathways & Interactions for SNORA14A Gene

SuperPathways for SNORA14A Gene

No Data Available

Interacting Proteins for SNORA14A Gene

Gene Ontology (GO) - Biological Process for SNORA14A Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORA14A Gene

Drugs & Compounds for SNORA14A Gene

No Compound Related Data Available

Transcripts for SNORA14A Gene

mRNA/cDNA for SNORA14A Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA14A Gene

No ASD Table

Relevant External Links for SNORA14A Gene

GeneLoc Exon Structure for
SNORA14A
ECgene alternative splicing isoforms for
SNORA14A

Expression for SNORA14A Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORA14A Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA14A Gene:

SNORA14A

SOURCE GeneReport for Unigene cluster for SNORA14A Gene:

Hs.689708
genes like me logo Genes that share expression patterns with SNORA14A: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA14A Gene

Orthologs for SNORA14A Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA14A Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA14 35
  • 99 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORA14 35
  • 90 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORA14 35
  • 88 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm26397 35
  • 86 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia SNORA14 35
  • 75 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA14 35 35
  • 58 (a)
ManyToMany
chicken
(Gallus gallus)
Aves SNORA14 35
  • 65 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SNORA14 35
  • 62 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii SNORA14 35 35
  • 50 (a)
ManyToMany
Species where no ortholog for SNORA14A was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORA14A Gene

ENSEMBL:
Gene Tree for SNORA14A (if available)
TreeFam:
Gene Tree for SNORA14A (if available)

Paralogs for SNORA14A Gene

No data available for Paralogs for SNORA14A Gene

Variants for SNORA14A Gene

Sequence variations from dbSNP and Humsavar for SNORA14A Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs1002169258 -- 75,942,290(+) AAACA(C/T)CAAAA intron-variant, upstream-variant-2KB
rs1002859227 -- 75,942,516(+) GCAGA(A/T)CAGCC intron-variant, upstream-variant-2KB
rs1004117999 -- 75,943,177(+) CGATC(G/T)CCTCA intron-variant, upstream-variant-2KB
rs1004147314 -- 75,943,560(+) GTGAA(A/C)AACCA intron-variant, upstream-variant-2KB
rs1009000935 -- 75,943,110(+) CCACA(C/T)CCAGC intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORA14A Gene

Variant ID Type Subtype PubMed ID
dgv120n16 CNV deletion 17901297
esv3613742 CNV loss 21293372
esv3613744 CNV loss 21293372
nsv428173 CNV gain 18775914
nsv528969 CNV gain 19592680

Relevant External Links for SNORA14A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA14A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA14A Gene

Disorders for SNORA14A Gene

Relevant External Links for SNORA14A

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORA14A

No disorders were found for SNORA14A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA14A Gene

Publications for SNORA14A Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L. … Weber M.J. (Nucleic Acids Res. 2006) 2 3 64
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss A.M. … Kiss T. (Mol. Cell. Biol. 2004) 2 3 64
  3. Genome-wide meta-analysis identifies six novel loci associated with habitual coffee consumption. (PMID: 25288136) . … Chasman D.I. (Mol. Psychiatry 2015) 3 64
  4. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64

Products for SNORA14A Gene

Sources for SNORA14A Gene

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