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Aliases for SNORA11F Gene

Subcategory (RNA class) for SNORA11F Gene

snoRNA

Quality Score for this RNA gene is

5

Aliases for SNORA11F Gene

  • Small Nucleolar RNA, H/ACA Box 11F 2 3 5

External Ids for SNORA11F Gene

ORGUL Members for SNORA11F Gene

Previous GeneCards Identifiers for SNORA11F Gene

  • GC00U936723
  • GC10U902719

Summaries for SNORA11F Gene

GeneCards Summary for SNORA11F Gene

SNORA11F (Small Nucleolar RNA, H/ACA Box 11F) is an RNA Gene, and is affiliated with the snoRNA class.

fRNAdb sequence ontologies for SNORA11F Gene - the ORGUL cluster for this gene includes several descriptions:

  • H_ACA_box_snoRNA: Members of the box H/ACA family contain an ACA triplet, exactly 3 nt upstream from the 3' end and an H-box in a hinge region that links two structurally similar functional domains of the molecule. Both boxes are important for snoRNA biosynthesis and function. A few box H/ACA snoRNAs are involved in rRNA processing; most others are known or predicted to participate in selection of uridine nucleosides in rRNA to be converted to pseudouridines. Site selection is mediated by direct base pairing of the snoRNA with rRNA through one or both targeting domains.

  • Small nucleolar RNA SNORA11: U107 (SNORA11) is a member of the H/ACA class of snoRNAs that guide the sites of modification of uridines to pseudouridines [1]. This snoRNA was identified by RT-PCR from blood cells and its expression confirmed by Northern blot analysis [2]. There is no predicted target for this guide snRNA [2].

View fRNAdb secondary structures for SNORA11F

Additional gene information for SNORA11F Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNORA11F Gene

Genomics for SNORA11F Gene

Regulatory Elements for SNORA11F Gene

Enhancers for SNORA11F Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10H073166 1.1 ENCODE 0.3 -41.8 -41796 2 PKNOX1 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF143 NUDT13 VCL NDST2 ECD AP3M1 ZSWIM8 DNAJB12 SEC24C PLAU ANAPC16
GH10H073131 0.7 ENCODE 0.4 -5.3 -5271 0 PKNOX1 FEZF1 EBF1 BCL11B ZNF664 ZNF366 ZSCAN5C SCRT2 FOS KLF8 NUDT13 CFAP70 SNORA11F FAM149B1
GH10H073159 0.7 ENCODE 0.3 -33.1 -33109 0 CTCF ZNF654 TRIM22 MNT REST RAD21 ZFHX2 MAFF EGR1 NBN CFAP70 FAM149B1 SNORA11F
GH10H073165 0.3 FANTOM5 0.3 -39.1 -39089 0 ECD ANXA7 FAM149B1 SNORA11F
GH10H073136 0.2 ENCODE 0.4 -10.5 -10501 1 NUDT13 CFAP70 ENSG00000272791 SNORA11F FAM149B1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORA11F on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORA11F Gene

Chromosome:
10
Start:
73,126,080 bp from pter
End:
73,126,207 bp from pter
Size:
128 bases
Orientation:
Minus strand

Genomic View for SNORA11F Gene

Genes around SNORA11F on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA11F Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA11F Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

ORGUL Member Location for SNORA11F Gene

ORGUL Member Location for SNORA11F gene

No data available for RefSeq DNA sequence for SNORA11F Gene

Proteins for SNORA11F Gene

Post-translational modifications for SNORA11F Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA11F Gene

Domains & Families for SNORA11F Gene

Gene Families for SNORA11F Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA11F: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA11F Gene

Function for SNORA11F Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA11F Gene

Localization for SNORA11F Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORA11F Gene

Pathways & Interactions for SNORA11F Gene

SuperPathways for SNORA11F Gene

No Data Available

Interacting Proteins for SNORA11F Gene

Gene Ontology (GO) - Biological Process for SNORA11F Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORA11F Gene

Drugs & Compounds for SNORA11F Gene

No Compound Related Data Available

Transcripts for SNORA11F Gene

fRNAdb Secondary structures for SNORA11F Gene

  • RF00614;SNORA11;DAAB013356396.1/177-102

mRNA/cDNA for SNORA11F Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA11F Gene

No ASD Table

Relevant External Links for SNORA11F Gene

GeneLoc Exon Structure for
SNORA11F
ECgene alternative splicing isoforms for
SNORA11F

Expression for SNORA11F Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA11F Gene

Orthologs for SNORA11F Gene

This gene was present in the common ancestor of mammals.

Orthologs for SNORA11F Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA11 34
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORA11 34 34
  • 81 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm22488 34
  • 80 (a)
OneToMany
Species where no ortholog for SNORA11F was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORA11F Gene

ENSEMBL:
Gene Tree for SNORA11F (if available)
TreeFam:
Gene Tree for SNORA11F (if available)

Paralogs for SNORA11F Gene

No data available for Paralogs for SNORA11F Gene

Variants for SNORA11F Gene

Relevant External Links for SNORA11F Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA11F

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNORA11F Gene

Disorders for SNORA11F Gene

Relevant External Links for SNORA11F

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORA11F

No disorders were found for SNORA11F Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA11F Gene

Publications for SNORA11F Gene

  1. An updated human snoRNAome. (PMID: 27174936) Jorjani H … Gruber AR (Nucleic acids research 2016) 2 3 60
  2. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L … Weber MJ (Nucleic acids research 2006) 1
  3. A novel experimental approach for systematic identification of box H/ACA snoRNAs from eukaryotes. (PMID: 16361266) Gu AD … Qu LH (Nucleic acids research 2005) 1
  4. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss AM … Kiss T (Molecular and cellular biology 2004) 1

Products for SNORA11F Gene

Sources for SNORA11F Gene

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