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Aliases for SNORA11E Gene

Subcategory (RNA class) for SNORA11E Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA11E Gene

  • Small Nucleolar RNA, H/ACA Box 11E 2 3 5

External Ids for SNORA11E Gene

ORGUL Members for SNORA11E Gene

Previous GeneCards Identifiers for SNORA11E Gene

  • GC0XU900871
  • GC0XM051825
  • GC0XP049245
  • GC0XP051806
  • GC0XM051806

Summaries for SNORA11E Gene

GeneCards Summary for SNORA11E Gene

SNORA11E (Small Nucleolar RNA, H/ACA Box 11E) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORA11E Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA11E Gene

Genomics for SNORA11E Gene

GeneHancer (GH) Regulatory Elements for SNORA11E Gene

Promoters and enhancers for SNORA11E Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XI052068 Promoter 1 EPDnew Ensembl 0.4 -5.4 -5427 1.4 MAGED4B SNORA11E
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORA11E on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORA11E gene promoter:

Genomic Locations for SNORA11E Gene

Genomic Locations for SNORA11E Gene
chrX:52,063,347-52,063,474
(GRCh38/hg38)
Size:
128 bases
Orientation:
Minus strand
chrX:51,806,443-51,806,570
(GRCh37/hg19)

Genomic View for SNORA11E Gene

Genes around SNORA11E on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA11E Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA11E Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA11E Gene

Proteins for SNORA11E Gene

Post-translational modifications for SNORA11E Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA11E Gene

Domains & Families for SNORA11E Gene

Gene Families for SNORA11E Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA11E: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA11E Gene

Function for SNORA11E Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA11E Gene

Localization for SNORA11E Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORA11E Gene

Pathways & Interactions for SNORA11E Gene

SuperPathways for SNORA11E Gene

No Data Available

Interacting Proteins for SNORA11E Gene

Gene Ontology (GO) - Biological Process for SNORA11E Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORA11E Gene

Drugs & Compounds for SNORA11E Gene

No Compound Related Data Available

Transcripts for SNORA11E Gene

mRNA/cDNA for SNORA11E Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA11E Gene

No ASD Table

Relevant External Links for SNORA11E Gene

GeneLoc Exon Structure for
SNORA11E
ECgene alternative splicing isoforms for
SNORA11E

Expression for SNORA11E Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORA11E Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA11E Gene:

SNORA11E
genes like me logo Genes that share expression patterns with SNORA11E: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA11E Gene

Orthologs for SNORA11E Gene

This gene was present in the common ancestor of mammals.

Orthologs for SNORA11E Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA11 34
  • 99 (a)
OneToMany
cow
(Bos Taurus)
Mammalia SNORA11 34 34
  • 83 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm22488 34
  • 81 (a)
OneToMany
Species where no ortholog for SNORA11E was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORA11E Gene

ENSEMBL:
Gene Tree for SNORA11E (if available)
TreeFam:
Gene Tree for SNORA11E (if available)

Paralogs for SNORA11E Gene

No data available for Paralogs for SNORA11E Gene

Variants for SNORA11E Gene

Sequence variations from dbSNP and Humsavar for SNORA11E Gene

SNP ID Clin Chr 0X pos Variation AA Info Type
rs200519198 -- 52,065,425(-) C/T upstream_transcript_variant
rs201915043 -- 52,062,977(-) G/T downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORA11E Gene

Variant ID Type Subtype PubMed ID
esv3350872 OTHER inversion 20981092
nsv1125093 CNV duplication 24896259
nsv516643 CNV gain 19592680

Additional Variant Information for SNORA11E Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA11E

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA11E Gene

Disorders for SNORA11E Gene

Additional Disease Information for SNORA11E

No disorders were found for SNORA11E Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA11E Gene

Publications for SNORA11E Gene

  1. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58
  2. snoSeeker: an advanced computational package for screening of guide and orphan snoRNA genes in the human genome. (PMID: 16990247) Yang JH … Qu LH (Nucleic acids research 2006) 3 58

Products for SNORA11E Gene

Sources for SNORA11E Gene

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