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Aliases for SNORA11C Gene

Subcategory (RNA class) for SNORA11C Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA11C Gene

  • Small Nucleolar RNA, H/ACA Box 11C 2 3 5
  • Small Nucleolar RNA, H/ACA Box 11C (Retrotransposed) 2

External Ids for SNORA11C Gene

ORGUL Members for SNORA11C Gene

Previous GeneCards Identifiers for SNORA11C Gene

  • GC0XU900874
  • GC0XP047133
  • GC0XP047248
  • GC0XP044961

Summaries for SNORA11C Gene

GeneCards Summary for SNORA11C Gene

SNORA11C (Small Nucleolar RNA, H/ACA Box 11C) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA11C Gene

Genomics for SNORA11C Gene

Regulatory Elements for SNORA11C Gene

Enhancers for SNORA11C Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH0XG047231 1.6 Ensembl ENCODE dbSUPER 12.3 -154.6 -154632 4.7 PKNOX1 SIN3A FEZF1 DMAP1 ZNF2 ZBTB7B YY1 SP3 ZHX2 REST INE1 ZNF81 SNORA11C LOC100419232 UXT WASF4P USP11 GC0XP047244 PIR42211
GH0XG047514 1.3 FANTOM5 ENCODE dbSUPER 13.1 +127.1 127123 2.3 GTF2F1 TBP TAF1 JUN RFX5 ZNF121 GATA3 RCOR1 FOS NFE2L2 LINC01560 ZNF41 SNORA11C LOC100419232 INE1 UBA1 ZNF674 NDUFB11 CFP ARAF
GH0XG047216 1.4 ENCODE dbSUPER 10.4 -170.1 -170131 5.0 HDGF PKNOX1 CREB3L1 ARNT AGO1 WRNIP1 SIN3A DMAP1 FEZF1 ZNF2 LOC100113397 INE1 LINC01560 USP11 ZNF81 ZNF674-AS1 ZNF157 ZNF182 SNORA11C LOC100419232
GH0XG047321 1 FANTOM5 ENCODE 12.3 -66.8 -66780 1.7 ATF1 HCFC1 YY2 SIX5 RBBP5 YY1 SMARCA4 POLR2A NR2C1 CREM SNORA11C LOC100419232 RGN UBA1 CDK16 ELK1 PIR34305 GC0XM047351
GH0XG047520 0.7 dbSUPER 13.1 +132.5 132524 0.9 ZNF263 HDGF SP3 NRF1 BHLHE40 TRIM22 NFXL1 NFIC ZFHX2 IKZF1 LINC01560 ZNF41 LOC100419232 SNORA11C INE1 UBA1 NDUFB11 NUS1P1 ARAF
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORA11C on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORA11C Gene

Chromosome:
X
Start:
47,388,649 bp from pter
End:
47,388,777 bp from pter
Size:
129 bases
Orientation:
Plus strand

Genomic View for SNORA11C Gene

Genes around SNORA11C on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA11C Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA11C Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA11C Gene

Proteins for SNORA11C Gene

Post-translational modifications for SNORA11C Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA11C Gene

Domains & Families for SNORA11C Gene

Gene Families for SNORA11C Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA11C: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA11C Gene

Function for SNORA11C Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA11C Gene

Localization for SNORA11C Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORA11C Gene

Pathways & Interactions for SNORA11C Gene

SuperPathways for SNORA11C Gene

No Data Available

Interacting Proteins for SNORA11C Gene

Gene Ontology (GO) - Biological Process for SNORA11C Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORA11C Gene

Drugs & Compounds for SNORA11C Gene

No Compound Related Data Available

Transcripts for SNORA11C Gene

mRNA/cDNA for SNORA11C Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA11C Gene

No ASD Table

Relevant External Links for SNORA11C Gene

GeneLoc Exon Structure for
SNORA11C
ECgene alternative splicing isoforms for
SNORA11C

Expression for SNORA11C Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORA11C Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA11C Gene:

SNORA11C

SOURCE GeneReport for Unigene cluster for SNORA11C Gene:

Hs.693443
genes like me logo Genes that share expression patterns with SNORA11C: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA11C Gene

Orthologs for SNORA11C Gene

This gene was present in the common ancestor of mammals.

Orthologs for SNORA11C Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA11 35
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORA11 35 35
  • 82 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm22488 35
  • 82 (a)
OneToMany
dog
(Canis familiaris)
Mammalia SNORA11 35
  • 75 (a)
ManyToMany
Species where no ortholog for SNORA11C was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORA11C Gene

ENSEMBL:
Gene Tree for SNORA11C (if available)
TreeFam:
Gene Tree for SNORA11C (if available)

Paralogs for SNORA11C Gene

No data available for Paralogs for SNORA11C Gene

Variants for SNORA11C Gene

Sequence variations from dbSNP and Humsavar for SNORA11C Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type
rs1001342391 -- 47,386,656(+) AGTTT(C/T)ACCAT intron-variant, upstream-variant-2KB
rs1001813374 -- 47,386,991(+) GAGAT(A/G)GAGTC intron-variant, upstream-variant-2KB
rs1002643616 -- 47,388,072(+) TTAAA(G/T)TTTTT intron-variant, upstream-variant-2KB
rs1002747568 -- 47,388,457(+) CAGGC(A/G)CACAC intron-variant, upstream-variant-2KB
rs1006494073 -- 47,387,521(+) CAAAG(C/T)GCTGG intron-variant, upstream-variant-2KB

Relevant External Links for SNORA11C Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA11C

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNORA11C Gene

Disorders for SNORA11C Gene

Relevant External Links for SNORA11C

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORA11C

No disorders were found for SNORA11C Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA11C Gene

Publications for SNORA11C Gene

  1. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64
  2. snoSeeker: an advanced computational package for screening of guide and orphan snoRNA genes in the human genome. (PMID: 16990247) Yang J.H. … Qu L.H. (Nucleic Acids Res. 2006) 3 64

Products for SNORA11C Gene

Sources for SNORA11C Gene

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