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Aliases for SNORA11C Gene

Subcategory (RNA class) for SNORA11C Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA11C Gene

  • Small Nucleolar RNA, H/ACA Box 11C 2 3 5
  • Small Nucleolar RNA, H/ACA Box 11C (Retrotransposed) 2

External Ids for SNORA11C Gene

ORGUL Members for SNORA11C Gene

Previous GeneCards Identifiers for SNORA11C Gene

  • GC0XU900874
  • GC0XP047133
  • GC0XP047248
  • GC0XP044961

Summaries for SNORA11C Gene

GeneCards Summary for SNORA11C Gene

SNORA11C (Small Nucleolar RNA, H/ACA Box 11C) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA11C Gene

Genomics for SNORA11C Gene

Regulatory Elements for SNORA11C Gene

Genomic Location for SNORA11C Gene

Chromosome:
X
Start:
47,388,649 bp from pter
End:
47,388,777 bp from pter
Size:
129 bases
Orientation:
Plus strand

Genomic View for SNORA11C Gene

Genes around SNORA11C on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA11C Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA11C Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA11C Gene

Proteins for SNORA11C Gene

Post-translational modifications for SNORA11C Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA11C Gene

Domains & Families for SNORA11C Gene

Gene Families for SNORA11C Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA11C: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA11C Gene

Function for SNORA11C Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA11C Gene

Localization for SNORA11C Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORA11C Gene

Pathways & Interactions for SNORA11C Gene

SuperPathways for SNORA11C Gene

No Data Available

Interacting Proteins for SNORA11C Gene

Gene Ontology (GO) - Biological Process for SNORA11C Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORA11C Gene

Drugs & Compounds for SNORA11C Gene

No Compound Related Data Available

Transcripts for SNORA11C Gene

mRNA/cDNA for SNORA11C Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA11C Gene

No ASD Table

Relevant External Links for SNORA11C Gene

GeneLoc Exon Structure for
SNORA11C
ECgene alternative splicing isoforms for
SNORA11C

Expression for SNORA11C Gene

mRNA expression in normal human tissues for SNORA11C Gene

SOURCE GeneReport for Unigene cluster for SNORA11C Gene Hs.693443

genes like me logo Genes that share expression patterns with SNORA11C: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for SNORA11C Gene

Orthologs for SNORA11C Gene

This gene was present in the common ancestor of mammals.

Orthologs for SNORA11C Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia SNORA11 36
  • 82 (a)
ManyToMany
SNORA11 36
  • 81 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia SNORA11 36
  • 75 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm22488 36
  • 82 (a)
OneToMany
chimpanzee
(Pan troglodytes)
Mammalia SNORA11 36
  • 100 (a)
OneToOne
Species with no ortholog for SNORA11C:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORA11C Gene

ENSEMBL:
Gene Tree for SNORA11C (if available)
TreeFam:
Gene Tree for SNORA11C (if available)

Paralogs for SNORA11C Gene

No data available for Paralogs for SNORA11C Gene

Variants for SNORA11C Gene

Relevant External Links for SNORA11C Gene

HapMap Linkage Disequilibrium report
SNORA11C

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNORA11C Gene

Disorders for SNORA11C Gene

Relevant External Links for SNORA11C

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORA11C

No disorders were found for SNORA11C Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA11C Gene

Publications for SNORA11C Gene

  1. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 67
  2. snoSeeker: an advanced computational package for screening of guide and orphan snoRNA genes in the human genome. (PMID: 16990247) Yang J.H. … Qu L.H. (Nucleic Acids Res. 2006) 3

Products for SNORA11C Gene

Sources for SNORA11C Gene

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