Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SNORA11B Gene

Subcategory (RNA class) for SNORA11B Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA11B Gene

  • Small Nucleolar RNA, H/ACA Box 11B 2 3 5
  • Small Nucleolar RNA, H/ACA Box 11B (Retrotransposed) 2

External Ids for SNORA11B Gene

ORGUL Members for SNORA11B Gene

Previous GeneCards Identifiers for SNORA11B Gene

  • GC14U900763
  • GC14P090663
  • GC14P091592
  • GC14P071768

Summaries for SNORA11B Gene

GeneCards Summary for SNORA11B Gene

SNORA11B (Small Nucleolar RNA, H/ACA Box 11B) is an RNA Gene, and is affiliated with the snoRNA class.

Additional gene information for SNORA11B Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA11B Gene

Genomics for SNORA11B Gene

GeneHancer (GH) Regulatory Elements for SNORA11B Gene

Promoters and enhancers for SNORA11B Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH14I091123 Enhancer 1.3 Ensembl ENCODE dbSUPER 550.8 -0.2 -165 5.3 HDAC1 PKNOX1 CLOCK NFIB NEUROD1 SIN3A BMI1 ZBTB40 ZNF121 ZNF766 GC14P091127 SNORA11B DGLUCY PPP4R3A ATXN3 TTC7B GC14P091092
GH14I091058 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 11.5 -65.2 -65157 6.3 HDGF PKNOX1 CLOCK FOXA2 ARID4B NEUROD1 SIN3A FEZF1 DMAP1 ZNF2 RPS6KA5 DGLUCY PPP4R3A NRDE2 TRIP11 RPS18P2 RNU7-30P RPL21P11 SNORA11B CCDC88C
GH14I091148 Enhancer 1.2 Ensembl ENCODE 13.2 +23.1 23063 1.5 CLOCK FOXA2 ARID4B SIN3A FEZF1 ZNF2 YY1 ZNF213 FOS REST GC14P091148 SNORA11B DGLUCY GC14P091227
GH14I091008 Enhancer 1.2 Ensembl ENCODE dbSUPER 11.4 -116.3 -116285 2.7 PKNOX1 KLF1 FOXA2 BATF RELA ATF7 ETV6 NFE2 KLF8 BCLAF1 GC14P091009 RPS6KA5 DGLUCY SNORA11B TTC7B
GH14I090968 Enhancer 1.1 Ensembl ENCODE 11.5 -156.1 -156132 3.2 PKNOX1 ATF1 FEZF1 ZNF766 ZNF302 ATF7 RUNX3 CAVIN1 YY2 JUNB RPS6KA5 RPS18P2 DGLUCY SNORA11B RPL21P11 PPP4R3A TTC7B GC14M092132 GC14P091009
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNORA11B on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNORA11B gene promoter:

Genomic Locations for SNORA11B Gene

Genomic Locations for SNORA11B Gene
chr14:91,126,425-91,126,553
(GRCh38/hg38)
Size:
129 bases
Orientation:
Plus strand
chr14:91,592,769-91,592,897
(GRCh37/hg19)

Genomic View for SNORA11B Gene

Genes around SNORA11B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA11B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA11B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA11B Gene

Proteins for SNORA11B Gene

Post-translational modifications for SNORA11B Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA11B Gene

Domains & Families for SNORA11B Gene

Gene Families for SNORA11B Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA11B: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA11B Gene

Function for SNORA11B Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA11B Gene

Localization for SNORA11B Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNORA11B Gene

Pathways & Interactions for SNORA11B Gene

SuperPathways for SNORA11B Gene

No Data Available

Interacting Proteins for SNORA11B Gene

Gene Ontology (GO) - Biological Process for SNORA11B Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORA11B Gene

Drugs & Compounds for SNORA11B Gene

No Compound Related Data Available

Transcripts for SNORA11B Gene

mRNA/cDNA for SNORA11B Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA11B Gene

No ASD Table

Relevant External Links for SNORA11B Gene

GeneLoc Exon Structure for
SNORA11B
ECgene alternative splicing isoforms for
SNORA11B

Expression for SNORA11B Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORA11B Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA11B Gene:

SNORA11B

SOURCE GeneReport for Unigene cluster for SNORA11B Gene:

Hs.693444
genes like me logo Genes that share expression patterns with SNORA11B: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA11B Gene

Orthologs for SNORA11B Gene

This gene was present in the common ancestor of mammals.

Orthologs for SNORA11B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA11 34
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORA11 34 34
  • 82 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm22488 34
  • 78 (a)
OneToMany
Species where no ortholog for SNORA11B was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORA11B Gene

ENSEMBL:
Gene Tree for SNORA11B (if available)
TreeFam:
Gene Tree for SNORA11B (if available)

Paralogs for SNORA11B Gene

No data available for Paralogs for SNORA11B Gene

Variants for SNORA11B Gene

Sequence variations from dbSNP and Humsavar for SNORA11B Gene

SNP ID Clin Chr 14 pos Variation AA Info Type
rs1000387454 -- 91,124,705(+) G/A upstream_transcript_variant
rs1000863606 -- 91,125,439(+) G/ upstream_transcript_variant
rs1001294372 -- 91,125,042(+) A/G upstream_transcript_variant
rs1001356142 -- 91,124,942(+) T/C upstream_transcript_variant
rs1002679938 -- 91,126,563(+) A/G downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNORA11B Gene

Variant ID Type Subtype PubMed ID
nsv1046924 CNV gain 25217958

Additional Variant Information for SNORA11B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA11B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA11B Gene

Disorders for SNORA11B Gene

Additional Disease Information for SNORA11B

No disorders were found for SNORA11B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA11B Gene

Publications for SNORA11B Gene

  1. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G … Montanini B (Genomics 2009) 3 58
  2. snoSeeker: an advanced computational package for screening of guide and orphan snoRNA genes in the human genome. (PMID: 16990247) Yang JH … Qu LH (Nucleic acids research 2006) 3 58

Products for SNORA11B Gene

Sources for SNORA11B Gene

Content
Loading form....