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Aliases for SNORA10 Gene

Subcategory (RNA class) for SNORA10 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA10 Gene

  • Small Nucleolar RNA, H/ACA Box 10 2 3
  • ACA10 Small Nucleolar RNA Within Ribosomal Protein 2 Host 3
  • ACA10 SnoRNA 3
  • ACA10 3

External Ids for SNORA10 Gene

Summaries for SNORA10 Gene

GeneCards Summary for SNORA10 Gene

SNORA10 (Small Nucleolar RNA, H/ACA Box 10) is a RNA Gene, and belongs to snoRNA RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA10 Gene

Genomics for SNORA10 Gene

Genomic Location for SNORA10 Gene

Start:
1,962,334 bp from pter
End:
1,962,466 bp from pter
Size:
133 bases
Orientation:
Minus strand

Genomic View for SNORA10 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORA10 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA10 Gene

Regulatory Elements for SNORA10 Gene

Proteins for SNORA10 Gene

Post-translational modifications for SNORA10 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA10 Gene

Domains for SNORA10 Gene

Gene Families for SNORA10 Gene

HGNC:
  • SNORD :ncRNAs / Small nucleolar RNAs : C/D box containing
genes like me logo Genes that share domains with SNORA10: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for SNORA10 Gene

Function for SNORA10 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNORA10 Gene

Localization for SNORA10 Gene

No data available for Gene Ontology (GO) - Cellular Components for SNORA10 Gene

Pathways for SNORA10 Gene

SuperPathways for SNORA10 Gene

No Data Available

Interacting Proteins for SNORA10 Gene

Gene Ontology (GO) - Biological Process for SNORA10 Gene

None

No data available for Pathways by source for SNORA10 Gene

Transcripts for SNORA10 Gene

mRNA/cDNA for SNORA10 Gene

(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNORA10 Gene

Small nucleolar RNA, H/ACA box 10:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA10 Gene

No ASD Table

Relevant External Links for SNORA10 Gene

GeneLoc Exon Structure for
SNORA10
ECgene alternative splicing isoforms for
SNORA10

Expression for SNORA10 Gene

mRNA expression in normal human tissues for SNORA10 Gene

SOURCE GeneReport for Unigene cluster for SNORA10 Gene Hs.679928

genes like me logo Genes that share expressions with SNORA10: view

Orthologs for SNORA10 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA10 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA64 37
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORA64 37
  • 67 (a)
ManyToMany
SNORA64 37
  • 80 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia SNORA64 37
  • 84 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SNORA64 37
  • 53 (a)
OneToMany
Species with no ortholog for SNORA10:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORA10 Gene

ENSEMBL:
Gene Tree for SNORA10 (if available)
TreeFam:
Gene Tree for SNORA10 (if available)

Paralogs for SNORA10 Gene

No data available for Paralogs for SNORA10 Gene

Variants for SNORA10 Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORA10 Gene

Variant ID Type Subtype PubMed ID
esv2422427 CNV Duplication 17116639
dgv2540n71 CNV Loss 21882294
dgv2544n71 CNV Loss 21882294
dgv2545n71 CNV Loss 21882294
nsv833120 CNV Loss 17160897
nsv905048 CNV Loss 21882294
dgv2546n71 CNV Loss 21882294
dgv2547n71 CNV Loss 21882294
dgv2548n71 CNV Gain 21882294
dgv2549n71 CNV Loss 21882294
dgv2550n71 CNV Loss 21882294
nsv905061 CNV Loss 21882294
dgv2551n71 CNV Loss 21882294
nsv471070 CNV Gain 18288195
nsv905070 CNV Gain+Loss 21882294
dgv2552n71 CNV Gain+Loss 21882294

Relevant External Links for SNORA10 Gene

HapMap Linkage Disequilibrium report
SNORA10

No data available for Sequence variations from dbSNP and Humsavar for SNORA10 Gene

Disorders for SNORA10 Gene

No disorders were found for SNORA10 Gene.

No data available for UniProtKB/Swiss-Prot for SNORA10 Gene

Publications for SNORA10 Gene

  1. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss A.M. … Kiss T. (Mol. Cell. Biol. 2004) 2 3
  2. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L. … Weber M.J. (Nucleic Acids Res. 2006) 2 3
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3

Products for SNORA10 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate SNORA10
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for SNORA10
    • Block miRNA regulation of SNORA10 using miScript Target Protectors

    Sources for SNORA10 Gene

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