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Aliases for SNORA10 Gene

Subcategory (RNA class) for SNORA10 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA10 Gene

  • Small Nucleolar RNA, H/ACA Box 10 2 3 5
  • ACA10 Small Nucleolar RNA Within Ribosomal Protein 2 Host 3
  • ACA10 SnoRNA 3
  • SNORA10A 3
  • ACA10 3

External Ids for SNORA10 Gene

Previous GeneCards Identifiers for SNORA10 Gene

  • GC16M001957
  • GC16M002015
  • GC16M002017
  • GC16M002021
  • GC16M002023
  • GC16M002025
  • GC16M002033
  • GC16M002038
  • GC16M001969
  • GC16M001976
  • GC16M001985
  • GC16M002008
  • GC16M002048

Summaries for SNORA10 Gene

GeneCards Summary for SNORA10 Gene

SNORA10 (Small Nucleolar RNA, H/ACA Box 10) is an RNA Gene, and is affiliated with the snoRNA class. Diseases associated with SNORA10 include Leber Congenital Amaurosis.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA10 Gene

Genomics for SNORA10 Gene

Regulatory Elements for SNORA10 Gene

Enhancers for SNORA10 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16G001958 1.2 ENCODE 0.7 +2.0 2028 3.2 CREB3L1 AGO1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 ENSG00000255513 SNHG9 RPL3L GC16M001963 GC16M001965 NDUFB10 SNORA10
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORA10 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORA10 Gene

Chromosome:
16
Start:
1,962,334 bp from pter
End:
1,962,466 bp from pter
Size:
133 bases
Orientation:
Minus strand

Genomic View for SNORA10 Gene

Genes around SNORA10 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA10 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA10 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA10 Gene

Proteins for SNORA10 Gene

Post-translational modifications for SNORA10 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA10 Gene

Domains & Families for SNORA10 Gene

Gene Families for SNORA10 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA10: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA10 Gene

Function for SNORA10 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA10 Gene

Localization for SNORA10 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORA10 Gene

Pathways & Interactions for SNORA10 Gene

SuperPathways for SNORA10 Gene

No Data Available

Interacting Proteins for SNORA10 Gene

Gene Ontology (GO) - Biological Process for SNORA10 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORA10 Gene

Drugs & Compounds for SNORA10 Gene

No Compound Related Data Available

Transcripts for SNORA10 Gene

mRNA/cDNA for SNORA10 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNORA10 Gene

Small nucleolar RNA, H/ACA box 10:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA10 Gene

No ASD Table

Relevant External Links for SNORA10 Gene

GeneLoc Exon Structure for
SNORA10
ECgene alternative splicing isoforms for
SNORA10

Expression for SNORA10 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORA10 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA10 Gene:

SNORA10

SOURCE GeneReport for Unigene cluster for SNORA10 Gene:

Hs.679928
genes like me logo Genes that share expression patterns with SNORA10: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA10 Gene

Orthologs for SNORA10 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA10 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA64 35
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORA64 35
  • 84 (a)
OneToMany
cow
(Bos Taurus)
Mammalia SNORA64 35 35
  • 80 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia SNORA64 35
  • 53 (a)
OneToMany
Species where no ortholog for SNORA10 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNORA10 Gene

ENSEMBL:
Gene Tree for SNORA10 (if available)
TreeFam:
Gene Tree for SNORA10 (if available)

Paralogs for SNORA10 Gene

No data available for Paralogs for SNORA10 Gene

Variants for SNORA10 Gene

Sequence variations from dbSNP and Humsavar for SNORA10 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs1000994330 -- 1,963,995(+) GGATG(A/G)CATGA intron-variant, upstream-variant-2KB
rs1001274604 -- 1,963,822(+) CTAGC(C/G/T)ATGAC intron-variant, upstream-variant-2KB
rs1003181864 -- 1,962,554(+) GATAC(C/T)AGCCA downstream-variant-500B, upstream-variant-2KB, reference, missense
rs1003900492 -- 1,964,001(+) CATGA(A/G)CCAAG intron-variant, upstream-variant-2KB
rs1004016496 -- 1,963,026(+) AGGTC(C/T)TGAGG intron-variant, nc-transcript-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORA10 Gene

Variant ID Type Subtype PubMed ID
dgv4858n54 CNV loss 21841781
esv2422427 CNV duplication 17116639
nsv1160329 CNV deletion 26073780
nsv471070 CNV gain 18288195
nsv571179 CNV loss 21841781
nsv833120 CNV loss 17160897
nsv952901 CNV deletion 24416366
nsv984249 CNV duplication 23825009

Relevant External Links for SNORA10 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA10

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA10 Gene

Disorders for SNORA10 Gene

MalaCards: The human disease database

(1) MalaCards diseases for SNORA10 Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
leber congenital amaurosis
  • lca
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for SNORA10

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORA10
genes like me logo Genes that share disorders with SNORA10: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SNORA10 Gene

Publications for SNORA10 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L. … Weber M.J. (Nucleic Acids Res. 2006) 2 3 64
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss A.M. … Kiss T. (Mol. Cell. Biol. 2004) 2 3 64
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64

Products for SNORA10 Gene

Sources for SNORA10 Gene

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