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Aliases for SNORA1 Gene

Subcategory (RNA class) for SNORA1 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA1 Gene

  • Small Nucleolar RNA, H/ACA Box 1 2 3 5
  • ACA1 3

External Ids for SNORA1 Gene

Previous GeneCards Identifiers for SNORA1 Gene

  • GC11M093147
  • GC11M093154
  • GC11M093160
  • GC11M093166
  • GC11M093172
  • GC11M093182
  • GC11M093194
  • GC11M093202
  • GC11M093467
  • GC11M093473
  • GC11M089542
  • GC11M093481
  • GC11M093497
  • GC11M093504
  • GC11M093513
  • GC11M093523
  • GC11M093539
  • GC11M093563
  • GC11M093734
  • GC11M093745
  • GC11M093757
  • GC11M093767
  • GC11M093776

Summaries for SNORA1 Gene

GeneCards Summary for SNORA1 Gene

SNORA1 (Small Nucleolar RNA, H/ACA Box 1) is an RNA Gene, and is affiliated with the snoRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA1 Gene

Genomics for SNORA1 Gene

Regulatory Elements for SNORA1 Gene

Enhancers for SNORA1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11G093783 1.1 ENCODE 32.5 -52.6 -52598 2.6 PKNOX1 FOXA2 CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 ZNF548 C11orf54 SNORA1 MED17 MRE11 ANKRD49 SNORA40 SNORA18 SNORA25 SNORD5 SNORD6
GH11G094504 0.8 ENCODE 23.6 -772.8 -772757 0.2 CTCF KLF1 PKNOX1 FOXA2 ZIC2 RAD21 GLIS2 SMC3 KLF7 ZNF548 MED17 MRE11 ANKRD49 SNORA1 FUT4
GH11G093541 1.3 ENCODE dbSUPER 12.6 +189.6 189573 3.1 HDGF FOXA2 CREB3L1 ARNT ARID4B SIN3A DMAP1 YY1 ZNF766 CBX5 MED17 MRE11 ANKRD49 SNORA1 SMCO4 CEP295 C11orf54 TAF1D GC11P093545 PIR55384
GH11G093570 1.2 Ensembl ENCODE 12.6 +161.2 161224 1.2 FOXA2 ATF1 MLX ARID4B DMAP1 BRCA1 ZNF48 YY1 GTF3C2 ZNF121 MED17 MRE11 ANKRD49 SNORA1 SMCO4 GC11M093572 PIR62997
GH11G093733 1.4 ENCODE dbSUPER 10.1 -6.2 -6203 9.9 HNRNPUL1 PKNOX1 MLX CREB3L1 AGO1 WRNIP1 ARID4B SIN3A DMAP1 YY1 MED17 C11orf54 CEP295 MRE11 TAF1D ANKRD49 SNORA1 SMCO4 GC11M093795 GC11M093805
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNORA1 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNORA1 Gene

Chromosome:
11
Start:
93,732,004 bp from pter
End:
93,732,133 bp from pter
Size:
130 bases
Orientation:
Minus strand

Genomic View for SNORA1 Gene

Genes around SNORA1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNORA1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNORA1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA1 Gene

Proteins for SNORA1 Gene

Post-translational modifications for SNORA1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA1 Gene

Domains & Families for SNORA1 Gene

Gene Families for SNORA1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNORA1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNORA1 Gene

Function for SNORA1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNORA1 Gene

Localization for SNORA1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNORA1 Gene

Pathways & Interactions for SNORA1 Gene

SuperPathways for SNORA1 Gene

No Data Available

Interacting Proteins for SNORA1 Gene

Gene Ontology (GO) - Biological Process for SNORA1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNORA1 Gene

Drugs & Compounds for SNORA1 Gene

No Compound Related Data Available

Transcripts for SNORA1 Gene

mRNA/cDNA for SNORA1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA1 Gene

No ASD Table

Relevant External Links for SNORA1 Gene

GeneLoc Exon Structure for
SNORA1
ECgene alternative splicing isoforms for
SNORA1

Expression for SNORA1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNORA1 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNORA1 Gene:

SNORA1

SOURCE GeneReport for Unigene cluster for SNORA1 Gene:

Hs.689724
genes like me logo Genes that share expression patterns with SNORA1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNORA1 Gene

Orthologs for SNORA1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA1 35
  • 100 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Gm22620 35
  • 83 (a)
OneToMany
dog
(Canis familiaris)
Mammalia SNORA1 35
  • 82 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA1 35
  • 71 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia SNORA1 35
  • 69 (a)
OneToMany
cow
(Bos Taurus)
Mammalia SNORA1 35
  • 66 (a)
ManyToMany
chicken
(Gallus gallus)
Aves SNORA1 35
  • 62 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SNORA1 35
  • 64 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii SNORA1 35
  • 56 (a)
OneToMany
Species where no ortholog for SNORA1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORA1 Gene

ENSEMBL:
Gene Tree for SNORA1 (if available)
TreeFam:
Gene Tree for SNORA1 (if available)

Paralogs for SNORA1 Gene

No data available for Paralogs for SNORA1 Gene

Variants for SNORA1 Gene

Sequence variations from dbSNP and Humsavar for SNORA1 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs1002861927 -- 93,732,336(+) AAACT(A/G)AACAC downstream-variant-500B, upstream-variant-2KB
rs1003060913 -- 93,731,891(+) CAATA(C/T)ACAGC downstream-variant-500B, upstream-variant-2KB
rs1004421250 -- 93,732,729(+) GTAAC(G/T)TAACA downstream-variant-500B, upstream-variant-2KB
rs1006611468 -- 93,732,066(+) CCTGT(C/G)TCAAT nc-transcript-variant, downstream-variant-500B, upstream-variant-2KB
rs1007052149 -- 93,732,274(+) TACCT(A/G)GTTCT downstream-variant-500B, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNORA1 Gene

Variant ID Type Subtype PubMed ID
esv3627294 CNV gain 21293372
nsv832232 CNV gain 17160897

Relevant External Links for SNORA1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNORA1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNORA1 Gene

Disorders for SNORA1 Gene

Relevant External Links for SNORA1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNORA1

No disorders were found for SNORA1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNORA1 Gene

Publications for SNORA1 Gene

  1. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L. … Weber M.J. (Nucleic Acids Res. 2006) 2 3 64
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss A.M. … Kiss T. (Mol. Cell. Biol. 2004) 2 3 64
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3 64

Products for SNORA1 Gene

Sources for SNORA1 Gene

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