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Aliases for SNORA1 Gene

Subcategory (RNA class) for SNORA1 Gene

snoRNA

Quality Score for this RNA gene is

3

Aliases for SNORA1 Gene

  • Small Nucleolar RNA, H/ACA Box 1 2 3
  • SNORA11 6
  • ACA1 3

External Ids for SNORA1 Gene

Summaries for SNORA1 Gene

GeneCards Summary for SNORA1 Gene

SNORA1 (Small Nucleolar RNA, H/ACA Box 1) is a RNA Gene, and belongs to snoRNA RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNORA1 Gene

Genomics for SNORA1 Gene

Genomic Location for SNORA1 Gene

Start:
93,732,004 bp from pter
End:
93,732,133 bp from pter
Size:
130 bases
Orientation:
Minus strand

Genomic View for SNORA1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNORA1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNORA1 Gene

Regulatory Elements for SNORA1 Gene

Proteins for SNORA1 Gene

Post-translational modifications for SNORA1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNORA1 Gene

Domains for SNORA1 Gene

Gene Families for SNORA1 Gene

HGNC:
  • SNORD :ncRNAs / Small nucleolar RNAs : C/D box containing
genes like me logo Genes that share domains with SNORA1: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for SNORA1 Gene

Function for SNORA1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNORA1 Gene

Localization for SNORA1 Gene

No data available for Gene Ontology (GO) - Cellular Components for SNORA1 Gene

Pathways for SNORA1 Gene

SuperPathways for SNORA1 Gene

No Data Available

Interacting Proteins for SNORA1 Gene

Gene Ontology (GO) - Biological Process for SNORA1 Gene

None

No data available for Pathways by source for SNORA1 Gene

Transcripts for SNORA1 Gene

mRNA/cDNA for SNORA1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNORA1 Gene

No ASD Table

Relevant External Links for SNORA1 Gene

GeneLoc Exon Structure for
SNORA1
ECgene alternative splicing isoforms for
SNORA1

Expression for SNORA1 Gene

mRNA expression in normal human tissues for SNORA1 Gene

SOURCE GeneReport for Unigene cluster for SNORA1 Gene Hs.689724

genes like me logo Genes that share expressions with SNORA1: view

Orthologs for SNORA1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNORA1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA1 37
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORA1 37
  • 66 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia SNORA1 37
  • 82 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm22620 37
  • 83 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia SNORA1 37
  • 69 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA1 37
  • 71 (a)
OneToMany
chicken
(Gallus gallus)
Aves SNORA1 37
  • 62 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SNORA1 37
  • 64 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii SNORA1 37
  • 56 (a)
OneToMany
Species with no ortholog for SNORA1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNORA1 Gene

ENSEMBL:
Gene Tree for SNORA1 (if available)
TreeFam:
Gene Tree for SNORA1 (if available)

Paralogs for SNORA1 Gene

No data available for Paralogs for SNORA1 Gene

Variants for SNORA1 Gene

Structural Variations from Database of Genomic Variants (DGV) for SNORA1 Gene

Variant ID Type Subtype PubMed ID
nsv898173 CNV Loss 21882294
nsv898181 CNV Gain 21882294
nsv898182 CNV Gain 21882294
nsv832232 CNV Gain 17160897

Relevant External Links for SNORA1 Gene

HapMap Linkage Disequilibrium report
SNORA1

No data available for Sequence variations from dbSNP and Humsavar for SNORA1 Gene

Disorders for SNORA1 Gene

No disorders were found for SNORA1 Gene.

No data available for UniProtKB/Swiss-Prot for SNORA1 Gene

Publications for SNORA1 Gene

  1. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss A.M. … Kiss T. (Mol. Cell. Biol. 2004) 2 3
  2. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. (PMID: 16381836) Lestrade L. … Weber M.J. (Nucleic Acids Res. 2006) 2 3
  3. Eukaryotic snoRNAs: a paradigm for gene expression flexibility. (PMID: 19446021) Dieci G. … Montanini B. (Genomics 2009) 3

Products for SNORA1 Gene

Sources for SNORA1 Gene

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