Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SNHG9 Gene

Subcategory (RNA class) for SNHG9 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SNHG9 Gene

  • Small Nucleolar RNA Host Gene 9 2 3 5
  • Small Nucleolar RNA Host Gene 9 (Non-Protein Coding) 2 3
  • Small Nucleolar RNA Host Gene (Non-Protein Coding) 9 3
  • Non-Protein Coding RNA 62 2
  • NCRNA00062 3

External Ids for SNHG9 Gene

Previous GeneCards Identifiers for SNHG9 Gene

  • GC16U900600
  • GC16P001954
  • GC16P002018
  • GC16P002020
  • GC16P002021
  • GC16P002025
  • GC16P002029
  • GC16P002048
  • GC16P002055
  • GC16P002079
  • GC16P002093
  • GC16P002114
  • GC16P001977
  • GC16P001985
  • GC16P001991
  • GC16P001998
  • GC16P002007

Summaries for SNHG9 Gene

GeneCards Summary for SNHG9 Gene

SNHG9 (Small Nucleolar RNA Host Gene 9) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNHG9 Gene

Genomics for SNHG9 Gene

Regulatory Elements for SNHG9 Gene

Enhancers for SNHG9 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16G001962 1.4 Ensembl ENCODE 43.7 -0.7 -738 4.1 CREB3L1 AGO1 DMAP1 YY1 ZNF143 ZNF263 SP3 NFYC ZFP41 SSRP1 ENSG00000255513 SNHG9 RPL3L SYNGR3 ENSG00000261505 LOC105371055 TRAF7 SNORA64 ENSG00000260051 RPS2
GH16G001958 1.2 ENCODE 46.2 -4.5 -4521 3.2 CREB3L1 AGO1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 ENSG00000255513 SNHG9 RPL3L NDUFB10 SNORA10 GC16M001965 GC16M001963
GH16G001970 1.2 ENCODE 6 +7.1 7090 2.3 CREB3L1 MLX AGO1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC ENSG00000255513 JPT2 IFT140 ENSG00000261505 PRSS30P SNHG9 TBL3 GFER
GH16G002014 1.2 Ensembl ENCODE 5.6 +51.1 51071 2.4 HDGF FOXA2 ARID4B SIN3A BRCA1 ZNF2 ZNF48 ZNF121 ZNF143 KLF7 ENSG00000255513 ENSG00000261505 SNORA64 ENSG00000260954 ENSG00000260051 LOC105371055 JPT2 NPW ZNF598 SNHG9
GH16G002250 1.1 ENCODE 4.5 +286.8 286766 3.4 HDGF HNRNPUL1 MLX ARNT AGO1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 ECI1 RNPS1 SNORD60 SNHG19 LOC106660606 ENSG00000261613 SNHG9 ENSG00000261663
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNHG9 on UCSC Golden Path with GeneCards custom track

Promoters for SNHG9 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000082416 -259 2201 CREB3L1 AGO1 DMAP1 YY1 ZNF143 ZNF263 SP3 NFYC ZFP41 SSRP1

Genomic Location for SNHG9 Gene

Chromosome:
16
Start:
1,964,959 bp from pter
End:
1,965,509 bp from pter
Size:
551 bases
Orientation:
Plus strand

Genomic View for SNHG9 Gene

Genes around SNHG9 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNHG9 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNHG9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNHG9 Gene

Proteins for SNHG9 Gene

Post-translational modifications for SNHG9 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNHG9 Gene

Domains & Families for SNHG9 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNHG9 Gene

Function for SNHG9 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNHG9 Gene

Localization for SNHG9 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNHG9 Gene

Pathways & Interactions for SNHG9 Gene

SuperPathways for SNHG9 Gene

No Data Available

Interacting Proteins for SNHG9 Gene

Gene Ontology (GO) - Biological Process for SNHG9 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNHG9 Gene

Drugs & Compounds for SNHG9 Gene

No Compound Related Data Available

Transcripts for SNHG9 Gene

mRNA/cDNA for SNHG9 Gene

(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNHG9 Gene

Small nucleolar RNA host gene 9 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SNHG9 Gene

No ASD Table

Relevant External Links for SNHG9 Gene

GeneLoc Exon Structure for
SNHG9
ECgene alternative splicing isoforms for
SNHG9

Expression for SNHG9 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNHG9 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNHG9 Gene:

SNHG9

SOURCE GeneReport for Unigene cluster for SNHG9 Gene:

Hs.115329
genes like me logo Genes that share expression patterns with SNHG9: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNHG9 Gene

Orthologs for SNHG9 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNHG9 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ACA64 35
  • 99 (a)
OneToOne
dog
(Canis familiaris)
Mammalia ACA64 35
  • 87 (a)
OneToMany
cow
(Bos Taurus)
Mammalia ACA64 35
  • 84 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Snora78 35
  • 84 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia ACA64 35 35
  • 74 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia ACA64 35
  • 69 (a)
OneToMany
chicken
(Gallus gallus)
Aves ACA64 35
  • 61 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia ACA64 35
  • 58 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii ACA64 35 35
  • 51 (a)
ManyToMany
Species where no ortholog for SNHG9 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNHG9 Gene

ENSEMBL:
Gene Tree for SNHG9 (if available)
TreeFam:
Gene Tree for SNHG9 (if available)

Paralogs for SNHG9 Gene

No data available for Paralogs for SNHG9 Gene

Variants for SNHG9 Gene

Sequence variations from dbSNP and Humsavar for SNHG9 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs1000994330 -- 1,963,995(+) GGATG(A/G)CATGA intron-variant, upstream-variant-2KB
rs1001274604 -- 1,963,822(+) CTAGC(C/G/T)ATGAC intron-variant, upstream-variant-2KB
rs1001755957 -- 1,964,845(+) GGGAA(A/G)CAGCT upstream-variant-2KB
rs1003786438 -- 1,964,877(+) CGAGA(A/T)CTCCG upstream-variant-2KB
rs1003892482 -- 1,965,717(+) TGTGG(C/T)CATGC intron-variant, downstream-variant-500B, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNHG9 Gene

Variant ID Type Subtype PubMed ID
dgv336n27 CNV loss 19166990
dgv4858n54 CNV loss 21841781
esv2422427 CNV duplication 17116639
nsv1160329 CNV deletion 26073780
nsv471070 CNV gain 18288195
nsv571179 CNV loss 21841781
nsv833120 CNV loss 17160897
nsv952901 CNV deletion 24416366
nsv984249 CNV duplication 23825009

Relevant External Links for SNHG9 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNHG9

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNHG9 Gene

Disorders for SNHG9 Gene

Relevant External Links for SNHG9

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNHG9

No disorders were found for SNHG9 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNHG9 Gene

Publications for SNHG9 Gene

No publications were found for SNHG9 Gene.

Products for SNHG9 Gene

Sources for SNHG9 Gene

Content
Loading form....