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Aliases for SNHG8 Gene

Subcategory (RNA class) for SNHG8 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for SNHG8 Gene

  • Small Nucleolar RNA Host Gene 8 2 3
  • Small Nucleolar RNA Host Gene 8 (Non-Protein Coding) 2 3
  • Long Intergenic Non-Protein Coding RNA 60 2 3
  • Small Nucleolar RNA Host Gene (Non-Protein Coding) 8 3
  • Non-Protein Coding RNA 60 2
  • NCRNA00060 3
  • LINC00060 3

External Ids for SNHG8 Gene

ORGUL Members for SNHG8 Gene

Previous GeneCards Identifiers for SNHG8 Gene

  • GC03P052543
  • GC04U900695
  • GC04P119420
  • GC04P119199
  • GC04P114935

Summaries for SNHG8 Gene

GeneCards Summary for SNHG8 Gene

SNHG8 (Small Nucleolar RNA Host Gene 8) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNHG8 Gene

Genomics for SNHG8 Gene

Regulatory Elements for SNHG8 Gene

Genomic Location for SNHG8 Gene

Start:
118,278,709 bp from pter
End:
118,279,823 bp from pter
Size:
1,115 bases
Orientation:
Plus strand

Genomic View for SNHG8 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNHG8 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNHG8 Gene

Proteins for SNHG8 Gene

Post-translational modifications for SNHG8 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNHG8 Gene

Domains for SNHG8 Gene

Gene Families for SNHG8 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNHG8: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNHG8 Gene

Function for SNHG8 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNHG8 Gene

Localization for SNHG8 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNHG8 Gene

Pathways for SNHG8 Gene

SuperPathways for SNHG8 Gene

No Data Available

Interacting Proteins for SNHG8 Gene

Gene Ontology (GO) - Biological Process for SNHG8 Gene

None

No data available for Pathways by source for SNHG8 Gene

Transcripts for SNHG8 Gene

mRNA/cDNA for SNHG8 Gene

(5) Additional mRNA sequences :
(7) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNHG8 Gene

Small nucleolar RNA host gene 8 (non-protein coding):
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for SNHG8

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNHG8 Gene

No ASD Table

Relevant External Links for SNHG8 Gene

GeneLoc Exon Structure for
SNHG8
ECgene alternative splicing isoforms for
SNHG8

Expression for SNHG8 Gene

mRNA expression in normal human tissues for SNHG8 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

SOURCE GeneReport for Unigene cluster for SNHG8 Gene Hs.535762

genes like me logo Genes that share expressions with SNHG8: view

In Situ Assay Products

No data available for mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for SNHG8 Gene

Orthologs for SNHG8 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNHG8 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA24 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORA24 36
  • 87 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia SNORA24 36
  • 98 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Gm24918 36
  • 79 (a)
OneToOne
Snhg8 16
oppossum
(Monodelphis domestica)
Mammalia SNORA24 36
  • 91 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA24 36
  • 82 (a)
ManyToMany
SNORA24 36
  • 82 (a)
ManyToMany
SNORA24 36
  • 79 (a)
ManyToMany
SNORA24 36
  • 77 (a)
ManyToMany
chicken
(Gallus gallus)
Aves SNORA24 36
  • 73 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SNORA24 36
  • 69 (a)
OneToMany
Species with no ortholog for SNHG8:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNHG8 Gene

ENSEMBL:
Gene Tree for SNHG8 (if available)
TreeFam:
Gene Tree for SNHG8 (if available)

Paralogs for SNHG8 Gene

No data available for Paralogs for SNHG8 Gene

Variants for SNHG8 Gene

Sequence variations from dbSNP and Humsavar for SNHG8 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type MAF
rs13135360 -- 118,276,849(+) GGGAA(C/T)GTCCA upstream-variant-2KB
rs62328869 -- 118,277,055(+) TATTC(A/G)TCTCA upstream-variant-2KB
rs73843415 -- 118,276,829(+) ATATT(C/T)TAATA upstream-variant-2KB
rs111340464 -- 118,277,165(+) AAGCA(C/T)TGTTG upstream-variant-2KB
rs138298691 -- 118,276,915(+) CACTA(C/T)ACTTT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNHG8 Gene

Variant ID Type Subtype PubMed ID
dgv1668e1 CNV Complex 17122850
esv34354 CNV Gain 17911159
nsv519017 CNV Loss 19592680
esv34038 CNV Loss 18971310

Relevant External Links for SNHG8 Gene

HapMap Linkage Disequilibrium report
SNHG8

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SNHG8 Gene

Disorders for SNHG8 Gene

No disorders were found for SNHG8 Gene.

No data available for UniProtKB/Swiss-Prot for SNHG8 Gene

Publications for SNHG8 Gene

  1. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss A.M. … Kiss T. (Mol. Cell. Biol. 2004) 2 3
  2. Transcriptome analysis of human gastric cancer. (PMID: 16341674) Oh J.H. … Kim N.S. (Mamm. Genome 2005) 3
  3. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for SNHG8 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate SNHG8
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for SNHG8
    • Block miRNA regulation of SNHG8 using miScript Target Protectors

    Sources for SNHG8 Gene

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