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Aliases for SNHG8 Gene

Subcategory (RNA class) for SNHG8 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for SNHG8 Gene

  • Small Nucleolar RNA Host Gene 8 2 3 5
  • Small Nucleolar RNA Host Gene 8 (Non-Protein Coding) 2 3
  • Long Intergenic Non-Protein Coding RNA 60 2 3
  • Small Nucleolar RNA Host Gene (Non-Protein Coding) 8 3
  • Non-Protein Coding RNA 60 2
  • NCRNA00060 3
  • LINC00060 3

External Ids for SNHG8 Gene

ORGUL Members for SNHG8 Gene

Previous GeneCards Identifiers for SNHG8 Gene

  • GC03P052543
  • GC04U900695
  • GC04P119420
  • GC04P119199
  • GC04P114935

Summaries for SNHG8 Gene

GeneCards Summary for SNHG8 Gene

SNHG8 (Small Nucleolar RNA Host Gene 8) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNHG8 Gene

Genomics for SNHG8 Gene

Regulatory Elements for SNHG8 Gene

Enhancers for SNHG8 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04F118275 1.1 ENCODE 57.2 +0.8 792 7.7 HDGF PKNOX1 CREB3L1 MLX ARID4B SIN3A DMAP1 ZNF2 YY1 CBX5 SNHG8 FKBP4P1 LOC105377391 LOC105377389 CEP170P1 LOC729218 SNORA24 PRSS12
GH04F118265 0.7 Ensembl ENCODE 57.7 -13.0 -13009 1.0 NRF1 GABPB1 NFYC SNHG8 FKBP4P1 LOC105377392 PIR50208
GH04F118285 1.1 ENCODE 28.4 +10.0 10048 5.8 PKNOX1 ARNT CREB3L1 SIN3A ARID4B DMAP1 ZNF2 YY1 CBX5 FOS SNHG8 PRSS12 CICP16 SNORA24
GH04F118869 1.1 Ensembl ENCODE 21.3 +591.4 591423 1.3 ZFP64 ZNF140 ZNF266 ZNF101 GATA3 ZNF138 FOS ZNF433 ZNF202 ZNF680 CICP16 LOC729218 SNHG8 LOC645513 METTL14 LOC105377393 SYNPO2
GH04F118683 1.3 Ensembl ENCODE 16.9 +406.4 406422 3.5 HDGF WRNIP1 ARID4B SIN3A DMAP1 YY1 ZNF143 SP3 NFYC JUNB SNHG8 USP53 SYNPO2 METTL14 CEP170P1 GC04P118767 LOC101929741
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNHG8 on UCSC Golden Path with GeneCards custom track

Promoters for SNHG8 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001248048 292 3200 HDGF PKNOX1 CREB3L1 MLX ARID4B SIN3A DMAP1 ZNF2 YY1 CBX5

Genomic Location for SNHG8 Gene

Chromosome:
4
Start:
118,278,709 bp from pter
End:
118,279,823 bp from pter
Size:
1,115 bases
Orientation:
Plus strand

Genomic View for SNHG8 Gene

Genes around SNHG8 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNHG8 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNHG8 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNHG8 Gene

Proteins for SNHG8 Gene

Post-translational modifications for SNHG8 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNHG8 Gene

Domains & Families for SNHG8 Gene

Gene Families for SNHG8 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNHG8: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNHG8 Gene

Function for SNHG8 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNHG8 Gene

Localization for SNHG8 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNHG8 Gene

Pathways & Interactions for SNHG8 Gene

SuperPathways for SNHG8 Gene

No Data Available

Interacting Proteins for SNHG8 Gene

Gene Ontology (GO) - Biological Process for SNHG8 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNHG8 Gene

Transcripts for SNHG8 Gene

mRNA/cDNA for SNHG8 Gene

(5) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNHG8 Gene

Small nucleolar RNA host gene 8 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SNHG8 Gene

No ASD Table

Relevant External Links for SNHG8 Gene

GeneLoc Exon Structure for
SNHG8
ECgene alternative splicing isoforms for
SNHG8

Expression for SNHG8 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNHG8 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNHG8 Gene:

SNHG8

SOURCE GeneReport for Unigene cluster for SNHG8 Gene:

Hs.535762
genes like me logo Genes that share expression patterns with SNHG8: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNHG8 Gene

Orthologs for SNHG8 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNHG8 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA24 35
  • 100 (a)
OneToOne
dog
(Canis familiaris)
Mammalia SNORA24 35
  • 98 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia SNORA24 35
  • 91 (a)
OneToMany
cow
(Bos Taurus)
Mammalia SNORA24 35
  • 87 (a)
ManyToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA24 35 35 35 35
  • 82 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Gm24918 35
  • 79 (a)
OneToOne
chicken
(Gallus gallus)
Aves SNORA24 35
  • 73 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia SNORA24 35
  • 69 (a)
OneToMany
Species where no ortholog for SNHG8 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNHG8 Gene

ENSEMBL:
Gene Tree for SNHG8 (if available)
TreeFam:
Gene Tree for SNHG8 (if available)

Paralogs for SNHG8 Gene

No data available for Paralogs for SNHG8 Gene

Variants for SNHG8 Gene

Sequence variations from dbSNP and Humsavar for SNHG8 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
rs1045851 -- 118,280,093(-) TGAAA(A/G)ATACA intron-variant, utr-variant-3-prime
rs1053519 -- 118,279,007(+) GCCCT(C/G)GGGGA intron-variant, nc-transcript-variant, upstream-variant-2KB
rs1063890 -- 118,279,123(+) CCGTC(A/G)GTTTG intron-variant, nc-transcript-variant, upstream-variant-2KB
rs1063891 -- 118,279,125(+) GTCAG(G/T)TTGAG intron-variant, nc-transcript-variant, upstream-variant-2KB
rs111340464 -- 118,277,165(+) AAGCA(C/T)TGTTG upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNHG8 Gene

Variant ID Type Subtype PubMed ID
nsv519017 CNV loss 19592680
nsv1002771 CNV gain 25217958
esv3894015 CNV gain 25118596
esv34354 CNV gain 17911159
esv34038 CNV loss 18971310
esv2759279 CNV gain 17122850
dgv5372n100 CNV loss 25217958

Relevant External Links for SNHG8 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNHG8

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNHG8 Gene

Disorders for SNHG8 Gene

Relevant External Links for SNHG8

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNHG8

No disorders were found for SNHG8 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNHG8 Gene

Publications for SNHG8 Gene

  1. SNHG8 is identified as a key regulator of epstein-barr virus(EBV)-associated gastric cancer by an integrative analysis of lncRNA and mRNA expression. (PMID: 27835598) Huang T. … Lin X. (Oncotarget 2016) 2 3 64
  2. Human box H/ACA pseudouridylation guide RNA machinery. (PMID: 15199136) Kiss A.M. … Kiss T. (Mol. Cell. Biol. 2004) 2 3 64
  3. Transcriptome analysis of human gastric cancer. (PMID: 16341674) Oh J.H. … Kim N.S. (Mamm. Genome 2005) 3 64
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64
  5. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3 64

Products for SNHG8 Gene

Sources for SNHG8 Gene

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