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Aliases for SNHG7 Gene

Subcategory (RNA class) for SNHG7 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SNHG7 Gene

  • Small Nucleolar RNA Host Gene 7 2 3 5
  • Small Nucleolar RNA Host Gene 7 (Non-Protein Coding) 2 3
  • Small Nucleolar RNA Host Gene (Non-Protein Coding) 7 3
  • Non-Protein Coding RNA 61 2
  • NCRNA00061 3

External Ids for SNHG7 Gene

Previous GeneCards Identifiers for SNHG7 Gene

  • GC09U900761
  • GC09M139615
  • GC09M109078

Summaries for SNHG7 Gene

GeneCards Summary for SNHG7 Gene

SNHG7 (Small Nucleolar RNA Host Gene 7) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNHG7 Gene

Genomics for SNHG7 Gene

Regulatory Elements for SNHG7 Gene

Enhancers for SNHG7 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around SNHG7 on UCSC Golden Path with GeneCards custom track

Promoters for SNHG7 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around SNHG7 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNHG7 Gene

Chromosome:
9
Start:
136,721,366 bp from pter
End:
136,728,184 bp from pter
Size:
6,819 bases
Orientation:
Minus strand

Genomic View for SNHG7 Gene

Genes around SNHG7 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNHG7 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNHG7 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNHG7 Gene

Proteins for SNHG7 Gene

Post-translational modifications for SNHG7 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNHG7 Gene

Domains & Families for SNHG7 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNHG7 Gene

Function for SNHG7 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNHG7 Gene

Localization for SNHG7 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNHG7 Gene

Pathways & Interactions for SNHG7 Gene

SuperPathways for SNHG7 Gene

No Data Available

Interacting Proteins for SNHG7 Gene

Gene Ontology (GO) - Biological Process for SNHG7 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNHG7 Gene

Drugs & Compounds for SNHG7 Gene

No Compound Related Data Available

Transcripts for SNHG7 Gene

mRNA/cDNA for SNHG7 Gene

(15) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNHG7 Gene

Small nucleolar RNA host gene 7 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SNHG7 Gene

No ASD Table

Relevant External Links for SNHG7 Gene

GeneLoc Exon Structure for
SNHG7
ECgene alternative splicing isoforms for
SNHG7

Expression for SNHG7 Gene

mRNA expression in normal human tissues for SNHG7 Gene

SOURCE GeneReport for Unigene cluster for SNHG7 Gene Hs.495480

genes like me logo Genes that share expression patterns with SNHG7: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for SNHG7 Gene

Orthologs for SNHG7 Gene

Evolution for SNHG7 Gene

ENSEMBL:
Gene Tree for SNHG7 (if available)
TreeFam:
Gene Tree for SNHG7 (if available)

No data available for Orthologs for SNHG7 Gene

Paralogs for SNHG7 Gene

No data available for Paralogs for SNHG7 Gene

Variants for SNHG7 Gene

Sequence variations from dbSNP and Humsavar for SNHG7 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs7859621 -- 136,729,525(+) ATTGG(A/G)TTTCG upstream-variant-2KB
rs115748153 -- 136,730,093(+) GAGCT(A/G)CCCCT upstream-variant-2KB
rs115850137 -- 136,725,506(+) CCACC(A/G)CGCCA intron-variant, nc-transcript-variant
rs116064510 -- 136,728,909(+) CCGCA(A/G)GGGCC upstream-variant-2KB
rs117843197 -- 136,730,105(+) TCTCT(A/G)GGTGT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNHG7 Gene

Variant ID Type Subtype PubMed ID
dgv8385n71 CNV Loss 21882294
dgv2426e1 CNV Complex 17122850
nsv469918 CNV Loss 18288195
dgv8400n71 CNV Loss 21882294
nsv894386 CNV Loss 21882294
nsv894387 CNV Gain 21882294
nsv8579 CNV Gain 18304495
nsv509334 CNV Insertion 20534489
dgv8404n71 CNV Loss 21882294
dgv2427e1 CNV Complex 17122850
esv2422220 CNV Deletion 17116639
dgv8408n71 CNV Loss 21882294
dgv957n27 CNV Loss 19166990
dgv8410n71 CNV Loss 21882294
dgv8411n71 CNV Loss 21882294
dgv8412n71 CNV Loss 21882294
nsv894446 CNV Loss 21882294
nsv7436 OTHER Inversion 18451855
nsv894447 CNV Loss 21882294
dgv8413n71 CNV Loss 21882294
dgv8414n71 CNV Loss 21882294
dgv8415n71 CNV Loss 21882294
dgv8416n71 CNV Loss 21882294
nsv6769 CNV Insertion 18451855

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for SNHG7 Gene

Disorders for SNHG7 Gene

Relevant External Links for SNHG7

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNHG7

No disorders were found for SNHG7 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNHG7 Gene

Publications for SNHG7 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 67
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3

Products for SNHG7 Gene

Sources for SNHG7 Gene

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