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Aliases for SNHG7 Gene

Subcategory (RNA class) for SNHG7 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SNHG7 Gene

  • Small Nucleolar RNA Host Gene 7 2 3 5
  • Small Nucleolar RNA Host Gene 7 (Non-Protein Coding) 2 3
  • Small Nucleolar RNA Host Gene (Non-Protein Coding) 7 3
  • Non-Protein Coding RNA 61 2
  • NCRNA00061 3

External Ids for SNHG7 Gene

Previous GeneCards Identifiers for SNHG7 Gene

  • GC09U900761
  • GC09M139615
  • GC09M109078

Summaries for SNHG7 Gene

GeneCards Summary for SNHG7 Gene

SNHG7 (Small Nucleolar RNA Host Gene 7) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNHG7 Gene

Genomics for SNHG7 Gene

Regulatory Elements for SNHG7 Gene

Enhancers for SNHG7 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09F135967 0.9 Ensembl ENCODE 50.3 +759.6 759568 3.1 HDGF PKNOX1 ARID4B SIN3A ZNF2 ZNF302 ZNF416 ZNF143 ZNF207 ZNF548 SNHG7 ENSG00000235572 ENSG00000238058 UBAC1 GC09P136007 GC09P136008 GC09P136009 GC09P136010 GC09P136011 GC09P136012
GH09F136725 1.1 ENCODE 46.5 +0.7 737 4.1 PKNOX1 ARNT CREB3L1 MLX WRNIP1 ARID4B SIN3A DMAP1 YY1 ZNF207 SNHG7 LCN8 LCN6 FAM166A NDOR1 CCDC183-AS1 STPG3 ENSG00000281808 GC09M136747 SNORA17A
GH09F136718 0.5 ENCODE 44.7 +9.1 9113 1.4 CTCF GLIS2 POLR2A BCL11A GLIS1 SP2 BCL11B ZKSCAN1 SNHG7 LCN8 FAM69B SNORA17B GC09M136743
GH09F136130 0.7 Ensembl ENCODE 27.8 +595.6 595627 4.1 PKNOX1 ARID4B GLI4 ZNF2 GLIS2 KLF7 ZNF202 SP3 ZNF610 SMARCA4 SNHG7 SNAPC4 ENSG00000238058 LCNL1 C9orf69 LOC105376323 ENSG00000275329 LHX3
GH09F136884 0.7 ENCODE 16.3 -158.1 -158091 3.1 HDGF PKNOX1 CREB3L1 ARID4B SIN3A DMAP1 ZNF207 ZNF143 FOS CEBPZ PHPT1 SNHG7 MAMDC4 C9orf172 C8G FBXW5 LCN12 TMEM141 PRR31 CCDC183-AS1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SNHG7 on UCSC Golden Path with GeneCards custom track

Promoters for SNHG7 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001317729 184 2401 PKNOX1 CREB3L1 MLX ARID4B SIN3A DMAP1 YY1 ZNF207 ZNF143 KLF13

Genomic Location for SNHG7 Gene

Chromosome:
9
Start:
136,721,366 bp from pter
End:
136,728,184 bp from pter
Size:
6,819 bases
Orientation:
Minus strand

Genomic View for SNHG7 Gene

Genes around SNHG7 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNHG7 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNHG7 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNHG7 Gene

Proteins for SNHG7 Gene

Post-translational modifications for SNHG7 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNHG7 Gene

Domains & Families for SNHG7 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNHG7 Gene

Function for SNHG7 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNHG7 Gene

Localization for SNHG7 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNHG7 Gene

Pathways & Interactions for SNHG7 Gene

SuperPathways for SNHG7 Gene

No Data Available

Interacting Proteins for SNHG7 Gene

Gene Ontology (GO) - Biological Process for SNHG7 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNHG7 Gene

Transcripts for SNHG7 Gene

mRNA/cDNA for SNHG7 Gene

(15) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNHG7 Gene

Small nucleolar RNA host gene 7 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SNHG7 Gene

No ASD Table

Relevant External Links for SNHG7 Gene

GeneLoc Exon Structure for
SNHG7
ECgene alternative splicing isoforms for
SNHG7

Expression for SNHG7 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNHG7 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNHG7 Gene:

SNHG7

SOURCE GeneReport for Unigene cluster for SNHG7 Gene:

Hs.495480
genes like me logo Genes that share expression patterns with SNHG7: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNHG7 Gene

Orthologs for SNHG7 Gene

Evolution for SNHG7 Gene

ENSEMBL:
Gene Tree for SNHG7 (if available)
TreeFam:
Gene Tree for SNHG7 (if available)

No data available for Orthologs for SNHG7 Gene

Paralogs for SNHG7 Gene

No data available for Paralogs for SNHG7 Gene

Variants for SNHG7 Gene

Sequence variations from dbSNP and Humsavar for SNHG7 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs1046508 -- 136,725,009(-) TCAGG(A/G)TGTTT intron-variant, nc-transcript-variant, downstream-variant-500B
rs10609067 -- 136,726,537(+) AGCGC(-/GT)ACCTC intron-variant, nc-transcript-variant, downstream-variant-500B, upstream-variant-2KB
rs10609068 -- 136,726,540(+) GCGTA(-/CCT)CACCT intron-variant, nc-transcript-variant, downstream-variant-500B, upstream-variant-2KB
rs10781513 -- 136,726,668(+) GCGAG(A/G)GTTAG intron-variant, nc-transcript-variant, downstream-variant-500B, upstream-variant-2KB
rs10870115 -- 136,726,465(+) TTAAC(C/T)GAGAC intron-variant, nc-transcript-variant, downstream-variant-500B, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNHG7 Gene

Variant ID Type Subtype PubMed ID
dgv13006n54 CNV loss 21841781
dgv957n27 CNV loss 19166990
esv2422220 CNV deletion 17116639
esv2759720 CNV loss 17122850
esv3891732 CNV loss 25118596
nsv469918 CNV loss 18288195
nsv509334 CNV insertion 20534489
nsv6769 CNV insertion 18451855
nsv7436 OTHER inversion 18451855
nsv8579 CNV gain 18304495
nsv951203 CNV deletion 24416366

Relevant External Links for SNHG7 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNHG7

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNHG7 Gene

Disorders for SNHG7 Gene

Relevant External Links for SNHG7

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNHG7

No disorders were found for SNHG7 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNHG7 Gene

Publications for SNHG7 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for SNHG7 Gene

Sources for SNHG7 Gene

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