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Aliases for SNHG7 Gene

Subcategory (RNA class) for SNHG7 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for SNHG7 Gene

  • Small Nucleolar RNA Host Gene 7 2 3
  • Small Nucleolar RNA Host Gene 7 (Non-Protein Coding) 2 3
  • Small Nucleolar RNA Host Gene (Non-Protein Coding) 7 3
  • Non-Protein Coding RNA 61 2
  • NCRNA00061 3

External Ids for SNHG7 Gene

ORGUL Members for SNHG7 Gene

Summaries for SNHG7 Gene

GeneCards Summary for SNHG7 Gene

SNHG7 (Small Nucleolar RNA Host Gene 7) is an RNA Gene, and belongs to the antisense RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNHG7 Gene

Genomics for SNHG7 Gene

Genomic Location for SNHG7 Gene

Start:
136,721,366 bp from pter
End:
136,728,184 bp from pter
Size:
6,819 bases
Orientation:
Minus strand

Genomic View for SNHG7 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNHG7 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNHG7 Gene

Regulatory Elements for SNHG7 Gene

Proteins for SNHG7 Gene

Post-translational modifications for SNHG7 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNHG7 Gene

Domains for SNHG7 Gene

Gene Families for SNHG7 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNHG7: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNHG7 Gene

Function for SNHG7 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNHG7 Gene

Localization for SNHG7 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNHG7 Gene

Pathways for SNHG7 Gene

SuperPathways for SNHG7 Gene

No Data Available

Interacting Proteins for SNHG7 Gene

Gene Ontology (GO) - Biological Process for SNHG7 Gene

None

No data available for Pathways by source for SNHG7 Gene

Transcripts for SNHG7 Gene

mRNA/cDNA for SNHG7 Gene

(15) Additional mRNA sequences :
(8) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNHG7 Gene

Small nucleolar RNA host gene 7 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SNHG7 Gene

No ASD Table

Relevant External Links for SNHG7 Gene

GeneLoc Exon Structure for
SNHG7
ECgene alternative splicing isoforms for
SNHG7

Expression for SNHG7 Gene

mRNA expression in normal human tissues for SNHG7 Gene

SOURCE GeneReport for Unigene cluster for SNHG7 Gene Hs.495480

genes like me logo Genes that share expressions with SNHG7: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for SNHG7 Gene

Orthologs for SNHG7 Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for SNHG7 Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
Mammalia Snhg7 16
Species with no ortholog for SNHG7:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNHG7 Gene

ENSEMBL:
Gene Tree for SNHG7 (if available)
TreeFam:
Gene Tree for SNHG7 (if available)

Paralogs for SNHG7 Gene

No data available for Paralogs for SNHG7 Gene

Variants for SNHG7 Gene

Sequence variations from dbSNP and Humsavar for SNHG7 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type MAF
rs7859621 -- 136,729,525(+) ATTGG(A/G)TTTCG upstream-variant-2KB
rs11999246 -- 136,729,249(+) CTGCG(C/T)GGTCT upstream-variant-2KB
rs35013210 -- 136,728,898(+) ACAGG(-/C)CTGAG upstream-variant-2KB
rs73554068 -- 136,729,806(+) TTGGT(A/G)ATAGA upstream-variant-2KB
rs77323746 -- 136,729,336(+) AGGCT(C/T)CACCT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNHG7 Gene

Variant ID Type Subtype PubMed ID
dgv8385n71 CNV Loss 21882294
dgv2426e1 CNV Complex 17122850
nsv469918 CNV Loss 18288195
dgv8400n71 CNV Loss 21882294
nsv894386 CNV Loss 21882294
nsv894387 CNV Gain 21882294
nsv8579 CNV Gain 18304495
nsv509334 CNV Insertion 20534489
dgv8404n71 CNV Loss 21882294
dgv2427e1 CNV Complex 17122850
esv2422220 CNV Deletion 17116639
dgv8408n71 CNV Loss 21882294
dgv957n27 CNV Loss 19166990
dgv8410n71 CNV Loss 21882294
dgv8411n71 CNV Loss 21882294
dgv8412n71 CNV Loss 21882294
nsv894446 CNV Loss 21882294
nsv7436 OTHER Inversion 18451855
nsv894447 CNV Loss 21882294
dgv8413n71 CNV Loss 21882294
dgv8414n71 CNV Loss 21882294
dgv8415n71 CNV Loss 21882294
dgv8416n71 CNV Loss 21882294
nsv6769 CNV Insertion 18451855

Relevant External Links for SNHG7 Gene

HapMap Linkage Disequilibrium report
SNHG7

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SNHG7 Gene

Disorders for SNHG7 Gene

No disorders were found for SNHG7 Gene.

No data available for UniProtKB/Swiss-Prot for SNHG7 Gene

Publications for SNHG7 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3

Products for SNHG7 Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate SNHG7
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for SNHG7
    • Block miRNA regulation of SNHG7 using miScript Target Protectors

    Sources for SNHG7 Gene

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