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Aliases for SNHG6 Gene

Subcategory (RNA class) for SNHG6 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for SNHG6 Gene

  • Small Nucleolar RNA Host Gene 6 2 3
  • Small Nucleolar RNA Host Gene 6 (Non-Protein Coding) 2 3
  • Small Nucleolar RNA Host Gene (Non-Protein Coding) 6 3
  • Non-Protein Coding RNA 58 2
  • HBII-276 Host 3
  • HBII-276HG 3
  • NCRNA00058 3
  • U87 Host 3
  • U87HG 3

External Ids for SNHG6 Gene

Previous GeneCards Identifiers for SNHG6 Gene

  • GC08M067996
  • GC08M067834
  • GC08M063326

Summaries for SNHG6 Gene

GeneCards Summary for SNHG6 Gene

SNHG6 (Small Nucleolar RNA Host Gene 6) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNHG6 Gene

Genomics for SNHG6 Gene

Regulatory Elements for SNHG6 Gene

Genomic Location for SNHG6 Gene

66,921,684 bp from pter
66,926,398 bp from pter
4,715 bases
Minus strand

Genomic View for SNHG6 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
GeneLoc Logo Gene Density

RefSeq DNA sequence for SNHG6 Gene

Proteins for SNHG6 Gene

Post-translational modifications for SNHG6 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNHG6 Gene

Domains & Families for SNHG6 Gene

Gene Families for SNHG6 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNHG6: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNHG6 Gene

Function for SNHG6 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNHG6 Gene

Localization for SNHG6 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNHG6 Gene

Pathways & Interactions for SNHG6 Gene

SuperPathways for SNHG6 Gene

No Data Available

Interacting Proteins for SNHG6 Gene

Gene Ontology (GO) - Biological Process for SNHG6 Gene


No data available for Pathways by source and SIGNOR curated interactions for SNHG6 Gene

Drugs & Compounds for SNHG6 Gene

No Compound Related Data Available

Transcripts for SNHG6 Gene

mRNA/cDNA for SNHG6 Gene

(2) Additional mRNA sequences :
(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNHG6 Gene

Small nucleolar RNA host gene 6 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SNHG6 Gene

No ASD Table

Relevant External Links for SNHG6 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SNHG6 Gene

mRNA expression in normal human tissues for SNHG6 Gene

SOURCE GeneReport for Unigene cluster for SNHG6 Gene Hs.372680

genes like me logo Genes that share expression patterns with SNHG6: view

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for SNHG6 Gene

Orthologs for SNHG6 Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for SNHG6 Gene

Organism Taxonomy Gene Similarity Type Details
(Mus musculus)
Mammalia Snhg6 16
Species with no ortholog for SNHG6:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNHG6 Gene

Gene Tree for SNHG6 (if available)
Gene Tree for SNHG6 (if available)

Paralogs for SNHG6 Gene

No data available for Paralogs for SNHG6 Gene

Variants for SNHG6 Gene

Sequence variations from dbSNP and Humsavar for SNHG6 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type MAF
rs28417755 -- 66,927,347(+) TGTGA(A/G)GGGGA upstream-variant-2KB
rs71515043 -- 66,927,513(+) TGGTT(C/G)CAGAG upstream-variant-2KB
rs72654920 -- 66,927,314(+) ACCTA(A/G)TTTTG upstream-variant-2KB
rs141251597 -- 66,926,928(+) CACTA(C/T)GTTGG upstream-variant-2KB
rs141788218 -- 66,927,389(+) AAGTG(A/G)GAGTT upstream-variant-2KB

Relevant External Links for SNHG6 Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNHG6 Gene

Disorders for SNHG6 Gene

Relevant External Links for SNHG6

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
genes like me logo Genes that share disorders with SNHG6: view

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNHG6 Gene

Publications for SNHG6 Gene

  1. Noncoding RNA of U87 host gene is associated with ribosomes and is relatively resistant to nonsense-mediated decay. (PMID: 16226852) Makarova J.A. … Kramerov D.A. (Gene 2005) 2 23 67

Products for SNHG6 Gene

Sources for SNHG6 Gene

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