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Aliases for SNHG6 Gene

Subcategory (RNA class) for SNHG6 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for SNHG6 Gene

  • Small Nucleolar RNA Host Gene 6 2 3 5
  • Small Nucleolar RNA Host Gene 6 (Non-Protein Coding) 2 3
  • Small Nucleolar RNA Host Gene (Non-Protein Coding) 6 3
  • Non-Protein Coding RNA 58 2
  • HBII-276 Host 3
  • HBII-276HG 3
  • NCRNA00058 3
  • U87 Host 3
  • U87HG 3

External Ids for SNHG6 Gene

Previous GeneCards Identifiers for SNHG6 Gene

  • GC08M067996
  • GC08M067834
  • GC08M063326

Summaries for SNHG6 Gene

GeneCards Summary for SNHG6 Gene

SNHG6 (Small Nucleolar RNA Host Gene 6) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNHG6 Gene

Genomics for SNHG6 Gene

Regulatory Elements for SNHG6 Gene

Enhancers for SNHG6 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08G066961 1.1 Ensembl ENCODE 11.6 -35.8 -35834 2.4 PKNOX1 ZBTB7B RAD21 GLIS2 ZNF366 SCRT2 SP3 CBFB KLF16 ZNF341 SNHG6 SNORD87 PPP1R42 CSPP1 COPS5 TCF24
GH08G067028 1 ENCODE 11.4 -102.6 -102577 1.9 PKNOX1 ATF1 CREB3L1 ARID4B SIN3A FEZF1 BRCA1 GLIS2 ZHX2 REST PPP1R42 CSPP1 COPS5 SNHG6 SNORD87 LOC105375885
GH08G066922 1.1 ENCODE 0.7 +1.8 1793 5.1 HDGF PKNOX1 WRNIP1 ARID4B SIN3A DMAP1 ZBTB7B YY1 SLC30A9 ZNF766 ARFGEF1 C8orf44 TCF24 VCPIP1 GC08M066924 SNHG6 SNORD87
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNHG6 on UCSC Golden Path with GeneCards custom track

Promoters for SNHG6 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000225453 442 2201 PKNOX1 WRNIP1 ARID4B SIN3A DMAP1 ZBTB7B YY1 SLC30A9 ZNF766 ZNF143

Genomic Location for SNHG6 Gene

66,921,684 bp from pter
66,926,398 bp from pter
4,715 bases
Minus strand

Genomic View for SNHG6 Gene

Genes around SNHG6 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNHG6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNHG6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNHG6 Gene

Proteins for SNHG6 Gene

Post-translational modifications for SNHG6 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNHG6 Gene

Domains & Families for SNHG6 Gene

Gene Families for SNHG6 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNHG6: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNHG6 Gene

Function for SNHG6 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNHG6 Gene

Localization for SNHG6 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNHG6 Gene

Pathways & Interactions for SNHG6 Gene

SuperPathways for SNHG6 Gene

No Data Available

Interacting Proteins for SNHG6 Gene

Gene Ontology (GO) - Biological Process for SNHG6 Gene


No data available for Pathways by source and SIGNOR curated interactions for SNHG6 Gene

Drugs & Compounds for SNHG6 Gene

No Compound Related Data Available

Transcripts for SNHG6 Gene

mRNA/cDNA for SNHG6 Gene

(2) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNHG6 Gene

Small nucleolar RNA host gene 6 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SNHG6 Gene

No ASD Table

Relevant External Links for SNHG6 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SNHG6 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNHG6 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNHG6 Gene:


SOURCE GeneReport for Unigene cluster for SNHG6 Gene:

genes like me logo Genes that share expression patterns with SNHG6: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNHG6 Gene

Orthologs for SNHG6 Gene

Evolution for SNHG6 Gene

Gene Tree for SNHG6 (if available)
Gene Tree for SNHG6 (if available)

No data available for Orthologs for SNHG6 Gene

Paralogs for SNHG6 Gene

No data available for Paralogs for SNHG6 Gene

Variants for SNHG6 Gene

Sequence variations from dbSNP and Humsavar for SNHG6 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs1001045797 -- 66,921,651(+) ACAAA(A/G)ATGAA intron-variant, downstream-variant-500B, utr-variant-3-prime
rs1001317180 -- 66,927,279(+) TGGAC(A/T)AAGAT upstream-variant-2KB
rs1002736100 -- 66,921,954(+) ACACT(G/T)TATTG intron-variant, nc-transcript-variant, utr-variant-3-prime
rs1003014452 -- 66,925,555(+) ACATC(A/G)GAAGA intron-variant, upstream-variant-2KB
rs1003046315 -- 66,924,685(+) GCCTC(C/G)CAGTT intron-variant

Relevant External Links for SNHG6 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNHG6 Gene

Disorders for SNHG6 Gene

Relevant External Links for SNHG6

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for SNHG6 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNHG6 Gene

Publications for SNHG6 Gene

  1. Noncoding RNA of U87 host gene is associated with ribosomes and is relatively resistant to nonsense-mediated decay. (PMID: 16226852) Makarova J.A. … Kramerov D.A. (Gene 2005) 2 3 22 64

Products for SNHG6 Gene

Sources for SNHG6 Gene

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