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Aliases for SNHG5 Gene

Subcategory (RNA class) for SNHG5 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for SNHG5 Gene

  • Small Nucleolar RNA Host Gene 5 2 3
  • Small Nucleolar RNA Host Gene 5 (Non-Protein Coding) 2 3
  • Long Intergenic Non-Protein Coding RNA 44 2 3
  • U50HG 3 6
  • Small Nucleolar RNA Host Gene (Non-Protein Coding) 5 3
  • Chromosome 6 Open Reading Frame 160 2
  • Non-Protein Coding RNA 44 2
  • NCRNA00044 3
  • LINC00044 3
  • BA33E24.2 3
  • U50 Host 3
  • C6orf160 3

External Ids for SNHG5 Gene

ORGUL Members for SNHG5 Gene

Previous Symbols for SNHG5 Gene

  • C6orf160

Summaries for SNHG5 Gene

Entrez Gene Summary for SNHG5 Gene

  • This gene is a member of both the non-protein-coding multiple snoRNA host gene family and the 5'-terminal oligopyrimidine (5' TOP) class of genes. Two snoRNAs are derived from the introns of this host gene but, although many alternative splice variants have been observed, the gene is thought to have no protein-coding potential. The gene is located at the chromosomal translocation breakpoint involved in B-cell lymphoma. [provided by RefSeq, Jul 2008]

GeneCards Summary for SNHG5 Gene

SNHG5 (Small Nucleolar RNA Host Gene 5) is a RNA Gene, and belongs to lncRNA RNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNHG5 Gene

Genomics for SNHG5 Gene

Genomic Location for SNHG5 Gene

Start:
85,660,950 bp from pter
End:
85,678,736 bp from pter
Size:
17,787 bases
Orientation:
Minus strand

Genomic View for SNHG5 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNHG5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNHG5 Gene

Regulatory Elements for SNHG5 Gene

Proteins for SNHG5 Gene

Post-translational modifications for SNHG5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNHG5 Gene

Domains for SNHG5 Gene

Gene Families for SNHG5 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs
genes like me logo Genes that share domains with SNHG5: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for SNHG5 Gene

Function for SNHG5 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNHG5 Gene

Localization for SNHG5 Gene

No data available for Gene Ontology (GO) - Cellular Components for SNHG5 Gene

Pathways for SNHG5 Gene

SuperPathways for SNHG5 Gene

No Data Available

Interacting Proteins for SNHG5 Gene

Gene Ontology (GO) - Biological Process for SNHG5 Gene

None

No data available for Pathways by source for SNHG5 Gene

Transcripts for SNHG5 Gene

mRNA/cDNA for SNHG5 Gene

(4) Additional mRNA sequences :
(23) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNHG5 Gene

Small nucleolar RNA host gene 5 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SNHG5 Gene

No ASD Table

Relevant External Links for SNHG5 Gene

GeneLoc Exon Structure for
SNHG5
ECgene alternative splicing isoforms for
SNHG5

Expression for SNHG5 Gene

mRNA expression in normal human tissues for SNHG5 Gene

SOURCE GeneReport for Unigene cluster for SNHG5 Gene Hs.292457

genes like me logo Genes that share expressions with SNHG5: view

Orthologs for SNHG5 Gene

Evolution for SNHG5 Gene

ENSEMBL:
Gene Tree for SNHG5 (if available)
TreeFam:
Gene Tree for SNHG5 (if available)

No data available for Orthologs for SNHG5 Gene

Paralogs for SNHG5 Gene

No data available for Paralogs for SNHG5 Gene

Variants for SNHG5 Gene

Sequence variations from dbSNP and Humsavar for SNHG5 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type MAF
rs1059373 -- 85,677,067(-) TTTTT(G/T)TTATT downstream-variant-500B, nc-transcript-variant
rs1059374 -- 85,677,064(-) TTGTT(A/T)TTACT downstream-variant-500B, nc-transcript-variant
rs1059375 -- 85,677,061(-) TTATT(A/T)CTTTT downstream-variant-500B, nc-transcript-variant
rs1059376 -- 85,677,060(-) TATTA(C/T)TTTTA downstream-variant-500B, nc-transcript-variant
rs11961028 -- 85,680,156(+) GCAAA(A/G)TAGGC upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNHG5 Gene

Variant ID Type Subtype PubMed ID
nsv886334 CNV Loss 21882294

Relevant External Links for SNHG5 Gene

HapMap Linkage Disequilibrium report
SNHG5

Disorders for SNHG5 Gene

No disorders were found for SNHG5 Gene.

No data available for UniProtKB/Swiss-Prot for SNHG5 Gene

Publications for SNHG5 Gene

  1. Intronic U50 small-nucleolar-RNA (snoRNA) host gene of no protein-coding potential is mapped at the chromosome breakpoint t(3;6)(q27;q15) of human B-cell lymphoma. (PMID: 10792466) Tanaka R. … Mori S. (Genes Cells 2000) 2 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for SNHG5 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate SNHG5
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for SNHG5
    • Block miRNA regulation of SNHG5 using miScript Target Protectors

    Sources for SNHG5 Gene

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