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Aliases for SNHG5 Gene

Subcategory (RNA class) for SNHG5 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SNHG5 Gene

  • Small Nucleolar RNA Host Gene 5 2 3 5
  • Small Nucleolar RNA Host Gene 5 (Non-Protein Coding) 2 3
  • Long Intergenic Non-Protein Coding RNA 44 2 3
  • Small Nucleolar RNA Host Gene (Non-Protein Coding) 5 3
  • Chromosome 6 Open Reading Frame 160 2
  • Non-Protein Coding RNA 44 2
  • NCRNA00044 3
  • LINC00044 3
  • BA33E24.2 3
  • U50 Host 3
  • C6orf160 3
  • U50HG 3

External Ids for SNHG5 Gene

Previous HGNC Symbols for SNHG5 Gene

  • C6orf160

Previous GeneCards Identifiers for SNHG5 Gene

  • GC06M086447
  • GC06M086451
  • GC06M086454
  • GC06M086457
  • GC06M086461
  • GC06M086465
  • GC06M086386
  • GC06M083611

Summaries for SNHG5 Gene

Entrez Gene Summary for SNHG5 Gene

  • This gene is a member of both the non-protein-coding multiple snoRNA host gene family and the 5'-terminal oligopyrimidine (5' TOP) class of genes. Two snoRNAs are derived from the introns of this host gene but, although many alternative splice variants have been observed, the gene is thought to have no protein-coding potential. The gene is located at the chromosomal translocation breakpoint involved in B-cell lymphoma. [provided by RefSeq, Jul 2008]

GeneCards Summary for SNHG5 Gene

SNHG5 (Small Nucleolar RNA Host Gene 5) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNHG5 Gene

Genomics for SNHG5 Gene

Regulatory Elements for SNHG5 Gene

Enhancers for SNHG5 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F085674 0.4 ENCODE 126.9 +1.1 1111 6.5 CREB3L1 MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF548 SP3 SNHG5 LOC100127917 KRT18P64 GC06M085679 GC06M085685 SNORD50A SNORD50B
GH06F085640 0.2 ENCODE 109.1 +35.4 35444 5.3 CREB3L1 MLX FEZF1 DMAP1 YY1 ZNF143 ZNF548 ZNF263 SP3 MEF2D SNHG5 LOC100127917 KRT18P64 SNORD50A SYNCRIP GC06P085634
GH06F085456 1.5 FANTOM5 Ensembl ENCODE 66.9 +215.2 215166 14.9 PKNOX1 WRNIP1 SIN3A FOS TBX21 MAFF RCOR2 MYNN STAT3 NBN SNHG5 NT5E PKMP3 GC06P085489
GH06F085579 1.2 Ensembl ENCODE 61.9 +98.2 98215 1.8 CBX3 PKNOX1 CHAMP1 FOS NFYC SMARCA4 IKZF1 HMBOX1 ZBTB33 ZNF644 SNHG5 NT5E SYNCRIP SNX14 GC06M085515
GH06F085592 0.8 ENCODE 61.5 +84.7 84729 3.0 PKNOX1 CREB3L1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF207 ZNF143 SNHG5 LOC100127917 KRT18P64 NT5E SYNCRIP SNORD50A SNX14 GC06M085515
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SNHG5 on UCSC Golden Path with GeneCards custom track

Promoters for SNHG5 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001221697 536 4801 CREB3L1 MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF548 SP3

Genomic Location for SNHG5 Gene

Chromosome:
6
Start:
85,660,950 bp from pter
End:
85,678,736 bp from pter
Size:
17,787 bases
Orientation:
Minus strand

Genomic View for SNHG5 Gene

Genes around SNHG5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNHG5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNHG5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNHG5 Gene

Proteins for SNHG5 Gene

Post-translational modifications for SNHG5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNHG5 Gene

Domains & Families for SNHG5 Gene

Gene Families for SNHG5 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNHG5: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNHG5 Gene

Function for SNHG5 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNHG5 Gene

Localization for SNHG5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNHG5 Gene

Pathways & Interactions for SNHG5 Gene

SuperPathways for SNHG5 Gene

No Data Available

Interacting Proteins for SNHG5 Gene

Gene Ontology (GO) - Biological Process for SNHG5 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNHG5 Gene

Transcripts for SNHG5 Gene

mRNA/cDNA for SNHG5 Gene

(4) Additional mRNA sequences :
(22) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNHG5 Gene

Small nucleolar RNA host gene 5 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SNHG5 Gene

No ASD Table

Relevant External Links for SNHG5 Gene

GeneLoc Exon Structure for
SNHG5
ECgene alternative splicing isoforms for
SNHG5

Expression for SNHG5 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNHG5 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNHG5 Gene:

SNHG5

SOURCE GeneReport for Unigene cluster for SNHG5 Gene:

Hs.292457
genes like me logo Genes that share expression patterns with SNHG5: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNHG5 Gene

Orthologs for SNHG5 Gene

Evolution for SNHG5 Gene

ENSEMBL:
Gene Tree for SNHG5 (if available)
TreeFam:
Gene Tree for SNHG5 (if available)

No data available for Orthologs for SNHG5 Gene

Paralogs for SNHG5 Gene

No data available for Paralogs for SNHG5 Gene

Variants for SNHG5 Gene

Sequence variations from dbSNP and Humsavar for SNHG5 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1059306 -- 85,678,391(-) TTTAA(C/G)AGCAA intron-variant, upstream-variant-2KB
rs1059307 -- 85,678,170(-) GTCTT(A/C)AGTGG nc-transcript-variant, upstream-variant-2KB
rs1059373 -- 85,677,067(-) TTTTT(G/T)TTATT nc-transcript-variant, downstream-variant-500B, upstream-variant-2KB
rs1059374 -- 85,677,064(-) TTGTT(A/T)TTACT nc-transcript-variant, downstream-variant-500B, upstream-variant-2KB
rs1059375 -- 85,677,061(-) TTATT(A/T)CTTTT nc-transcript-variant, downstream-variant-500B, upstream-variant-2KB

Relevant External Links for SNHG5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNHG5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNHG5 Gene

Disorders for SNHG5 Gene

Relevant External Links for SNHG5

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNHG5

No disorders were found for SNHG5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNHG5 Gene

Publications for SNHG5 Gene

  1. Intronic U50 small-nucleolar-RNA (snoRNA) host gene of no protein-coding potential is mapped at the chromosome breakpoint t(3;6)(q27;q15) of human B-cell lymphoma. (PMID: 10792466) Tanaka R. … Mori S. (Genes Cells 2000) 2 3 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for SNHG5 Gene

Sources for SNHG5 Gene

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