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Aliases for SNHG5 Gene

Subcategory (RNA class) for SNHG5 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SNHG5 Gene

  • Small Nucleolar RNA Host Gene 5 2 3 5
  • Small Nucleolar RNA Host Gene 5 (Non-Protein Coding) 2 3
  • Long Intergenic Non-Protein Coding RNA 44 2 3
  • Chromosome 6 Open Reading Frame 160 2
  • Non-Protein Coding RNA 44 2
  • NCRNA00044 3
  • LINC00044 3
  • U50 Host 3
  • C6orf160 3
  • U50HG 3

External Ids for SNHG5 Gene

Previous HGNC Symbols for SNHG5 Gene

  • C6orf160

Previous GeneCards Identifiers for SNHG5 Gene

  • GC06M086447
  • GC06M086451
  • GC06M086454
  • GC06M086457
  • GC06M086461
  • GC06M086465
  • GC06M086386
  • GC06M083611

Summaries for SNHG5 Gene

Entrez Gene Summary for SNHG5 Gene

  • This gene represent a snoRNA host gene and produces a long non-coding RNA. This RNA may regulate gene expression by acting as a sponge for microRNAs. This transcript may also stabilize mRNAs by blocking degradation by staufen double-stranded RNA binding protein 1. [provided by RefSeq, Dec 2017]

GeneCards Summary for SNHG5 Gene

SNHG5 (Small Nucleolar RNA Host Gene 5) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SNHG5 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNHG5 Gene

Genomics for SNHG5 Gene

GeneHancer (GH) Regulatory Elements for SNHG5 Gene

Promoters and enhancers for SNHG5 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I085674 Promoter/Enhancer 1.6 Ensembl ENCODE 676.9 +1.1 1111 6.5 CLOCK MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SNHG5 GC06M085679 GC06M085687 GC06M085688 SNORD50A SNORD50B SYNCRIP
GH06I085641 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 109.1 +35.4 35444 5.3 CLOCK MLX FEZF1 DMAP1 IRF4 YY1 ZNF213 E2F8 ZNF143 ZNF548 SYNCRIP SNHG5 SNORD50A SNX14 GC06P085634
GH06I085592 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 52.4 +84.7 84728 3 PKNOX1 FOXA2 SMAD1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 POLR2B SNX14 SNHG5 SYNCRIP NT5E SNORD50A ENSG00000271793 GC06M085515
GH06I085447 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 49.6 +227.9 227920 6.2 FOXA2 MLX ARID4B SIN3A DMAP1 ZNF2 ZNF48 YY1 ATF7 RUNX3 NT5E SNHG5 PKMP3 GC06P085489
GH06I085456 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 66.9 +215.2 215166 14.9 PKNOX1 FOXA2 ATF7 FOS RUNX3 RXRA NFIL3 MAFF RCOR2 MYNN SNHG5 NT5E PKMP3 GC06P085489
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNHG5 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNHG5 gene promoter:

Genomic Locations for SNHG5 Gene

Genomic Locations for SNHG5 Gene
chr6:85,660,950-85,678,736
(GRCh38/hg38)
Size:
17,787 bases
Orientation:
Minus strand
chr6:86,370,710-86,388,451
(GRCh37/hg19)

Genomic View for SNHG5 Gene

Genes around SNHG5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNHG5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNHG5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNHG5 Gene

Proteins for SNHG5 Gene

Post-translational modifications for SNHG5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNHG5 Gene

Domains & Families for SNHG5 Gene

Gene Families for SNHG5 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNHG5: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNHG5 Gene

Function for SNHG5 Gene

Phenotypes From GWAS Catalog for SNHG5 Gene

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNHG5 Gene

Localization for SNHG5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNHG5 Gene

Pathways & Interactions for SNHG5 Gene

SuperPathways for SNHG5 Gene

No Data Available

Interacting Proteins for SNHG5 Gene

Gene Ontology (GO) - Biological Process for SNHG5 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNHG5 Gene

Drugs & Compounds for SNHG5 Gene

No Compound Related Data Available

Transcripts for SNHG5 Gene

mRNA/cDNA for SNHG5 Gene

(4) Additional mRNA sequences :
(22) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNHG5 Gene

Small nucleolar RNA host gene 5 (non-protein coding):
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNHG5 Gene

No ASD Table

Relevant External Links for SNHG5 Gene

GeneLoc Exon Structure for
SNHG5
ECgene alternative splicing isoforms for
SNHG5

Expression for SNHG5 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNHG5 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNHG5 Gene:

SNHG5

SOURCE GeneReport for Unigene cluster for SNHG5 Gene:

Hs.292457
genes like me logo Genes that share expression patterns with SNHG5: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNHG5 Gene

Orthologs for SNHG5 Gene

Evolution for SNHG5 Gene

ENSEMBL:
Gene Tree for SNHG5 (if available)
TreeFam:
Gene Tree for SNHG5 (if available)

No data available for Orthologs for SNHG5 Gene

Paralogs for SNHG5 Gene

No data available for Paralogs for SNHG5 Gene

Variants for SNHG5 Gene

Sequence variations from dbSNP and Humsavar for SNHG5 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000212406 -- 85,678,697(-) C/G/T non_coding_transcript_variant
rs1001045088 -- 85,678,907(-) G/A/T upstream_transcript_variant
rs1001156704 -- 85,679,947(-) T/C upstream_transcript_variant
rs1001319671 -- 85,676,987(-) T/C downstream_transcript_variant
rs1001491918 -- 85,678,694(-) C/A non_coding_transcript_variant

Additional Variant Information for SNHG5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNHG5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNHG5 Gene

Disorders for SNHG5 Gene

Additional Disease Information for SNHG5

No disorders were found for SNHG5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNHG5 Gene

Publications for SNHG5 Gene

  1. SNHG5 promotes colorectal cancer cell survival by counteracting STAU1-mediated mRNA destabilization. (PMID: 28004750) Damas ND … Lund AH (Nature communications 2016) 2 3 58
  2. Intronic U50 small-nucleolar-RNA (snoRNA) host gene of no protein-coding potential is mapped at the chromosome breakpoint t(3;6)(q27;q15) of human B-cell lymphoma. (PMID: 10792466) Tanaka R … Mori S (Genes to cells : devoted to molecular & cellular mechanisms 2000) 2 3 58
  3. The lncRNA SNHG5/miR-32 axis regulates gastric cancer cell proliferation and migration by targeting KLF4. (PMID: 27871067) Zhao L … Shi J (FASEB journal : official publication of the Federation of American Societies for Experimental Biology 2017) 3 58
  4. LncRNA SNHG5 regulates imatinib resistance in chronic myeloid leukemia via acting as a CeRNA against MiR-205-5p. (PMID: 28861326) He B … Jiang X (American journal of cancer research 2017) 3 58
  5. Serum long non-coding RNA, snoRNA host gene 5 level as a new tumor marker of malignant melanoma. (PMID: 26440365) Ichigozaki Y … Ihn H (Experimental dermatology 2016) 3 58

Products for SNHG5 Gene

Sources for SNHG5 Gene

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