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Aliases for SNHG5 Gene

Subcategory (RNA class) for SNHG5 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SNHG5 Gene

  • Small Nucleolar RNA Host Gene 5 2 3 5
  • Small Nucleolar RNA Host Gene 5 (Non-Protein Coding) 2 3
  • Long Intergenic Non-Protein Coding RNA 44 2 3
  • Small Nucleolar RNA Host Gene (Non-Protein Coding) 5 3
  • Chromosome 6 Open Reading Frame 160 2
  • Non-Protein Coding RNA 44 2
  • NCRNA00044 3
  • LINC00044 3
  • BA33E24.2 3
  • U50 Host 3
  • C6orf160 3
  • U50HG 3

External Ids for SNHG5 Gene

Previous HGNC Symbols for SNHG5 Gene

  • C6orf160

Previous GeneCards Identifiers for SNHG5 Gene

  • GC06M086447
  • GC06M086451
  • GC06M086454
  • GC06M086457
  • GC06M086461
  • GC06M086465
  • GC06M086386
  • GC06M083611

Summaries for SNHG5 Gene

Entrez Gene Summary for SNHG5 Gene

  • This gene is a member of both the non-protein-coding multiple snoRNA host gene family and the 5'-terminal oligopyrimidine (5' TOP) class of genes. Two snoRNAs are derived from the introns of this host gene but, although many alternative splice variants have been observed, the gene is thought to have no protein-coding potential. The gene is located at the chromosomal translocation breakpoint involved in B-cell lymphoma. [provided by RefSeq, Jul 2008]

GeneCards Summary for SNHG5 Gene

SNHG5 (Small Nucleolar RNA Host Gene 5) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SNHG5 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNHG5 Gene

Genomics for SNHG5 Gene

Regulatory Elements for SNHG5 Gene

Enhancers for SNHG5 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06H085640 1.4 ENCODE dbSUPER 109.1 +35.4 35444 5 MLX FEZF1 DMAP1 YY1 ZNF143 ZNF548 SP3 ZC3H11A MEF2D ZNF610 SNHG5 SYNCRIP LOC100127917 KRT18P64 SNORD50A SNX14 GC06P085634
GH06H085674 1.2 ENCODE 126.8 +1.1 1111 6 MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF548 SP3 NFYC SNHG5 SYNCRIP LOC100127917 KRT18P64 GC06M085679 SNORD50B SNORD50A GC06M085687
GH06H085456 1.8 FANTOM5 Ensembl ENCODE dbSUPER 66.9 +215.2 215166 14 PKNOX1 FOXA2 FOS ATF7 RUNX3 NFIL3 MAFF RCOR2 MYNN STAT3 SNHG5 NT5E PKMP3 GC06P085489
GH06H085579 1.1 Ensembl ENCODE 61.9 +98.2 98222 1 PKNOX1 FOXA2 BATF CHAMP1 FOS ATF7 RUNX3 NFYC REST NFIC SNHG5 NT5E SYNCRIP SNX14 GC06M085515
GH06H085447 1.3 ENCODE dbSUPER 49.6 +227.9 227920 6 FOXA2 ATF1 MLX ARID4B SIN3A DMAP1 ZNF2 YY1 ATF7 RUNX3 SNHG5 NT5E PKMP3 GC06P085489
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNHG5 on UCSC Golden Path with GeneCards custom track

Promoters for SNHG5 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000199719 436 4201 MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF548 SP3 NFYC

Genomic Location for SNHG5 Gene

Chromosome:
6
Start:
85,660,950 bp from pter
End:
85,678,736 bp from pter
Size:
17,787 bases
Orientation:
Minus strand

Genomic View for SNHG5 Gene

Genes around SNHG5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNHG5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNHG5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNHG5 Gene

Proteins for SNHG5 Gene

Post-translational modifications for SNHG5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNHG5 Gene

Domains & Families for SNHG5 Gene

Gene Families for SNHG5 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNHG5: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNHG5 Gene

Function for SNHG5 Gene

Phenotypes From GWAS Catalog for SNHG5 Gene

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for SNHG5
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNHG5 Gene

Localization for SNHG5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNHG5 Gene

Pathways & Interactions for SNHG5 Gene

SuperPathways for SNHG5 Gene

No Data Available

Interacting Proteins for SNHG5 Gene

Gene Ontology (GO) - Biological Process for SNHG5 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNHG5 Gene

Drugs & Compounds for SNHG5 Gene

No Compound Related Data Available

Transcripts for SNHG5 Gene

mRNA/cDNA for SNHG5 Gene

(4) Additional mRNA sequences :
(22) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNHG5 Gene

Small nucleolar RNA host gene 5 (non-protein coding):
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for SNHG5
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for SNHG5 Gene

No ASD Table

Relevant External Links for SNHG5 Gene

GeneLoc Exon Structure for
SNHG5
ECgene alternative splicing isoforms for
SNHG5

Expression for SNHG5 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNHG5 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNHG5 Gene:

SNHG5

SOURCE GeneReport for Unigene cluster for SNHG5 Gene:

Hs.292457
genes like me logo Genes that share expression patterns with SNHG5: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNHG5 Gene

Orthologs for SNHG5 Gene

Evolution for SNHG5 Gene

ENSEMBL:
Gene Tree for SNHG5 (if available)
TreeFam:
Gene Tree for SNHG5 (if available)

No data available for Orthologs for SNHG5 Gene

Paralogs for SNHG5 Gene

No data available for Paralogs for SNHG5 Gene

Variants for SNHG5 Gene

Sequence variations from dbSNP and Humsavar for SNHG5 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1000212406 -- 85,678,697(+) ACCTA(C/G/T)CACCC nc-transcript-variant, upstream-variant-2KB
rs1001045088 -- 85,678,907(+) CGCAG(A/G/T)CCGGC upstream-variant-2KB
rs1001156704 -- 85,679,947(+) CTTTT(C/T)AGAAA intron-variant, upstream-variant-2KB
rs1001319671 -- 85,676,987(+) CACAG(C/T)AATTT intron-variant, downstream-variant-500B, upstream-variant-2KB
rs1001491918 -- 85,678,694(+) CTCAC(A/C)TACCA nc-transcript-variant, upstream-variant-2KB

Relevant External Links for SNHG5 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNHG5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNHG5 Gene

Disorders for SNHG5 Gene

Relevant External Links for SNHG5

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNHG5

No disorders were found for SNHG5 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNHG5 Gene

Publications for SNHG5 Gene

  1. SNHG5 promotes colorectal cancer cell survival by counteracting STAU1-mediated mRNA destabilization. (PMID: 28004750) Damas ND … Lund AH (Nature communications 2016) 2 3 60
  2. Intronic U50 small-nucleolar-RNA (snoRNA) host gene of no protein-coding potential is mapped at the chromosome breakpoint t(3;6)(q27;q15) of human B-cell lymphoma. (PMID: 10792466) Tanaka R … Mori S (Genes to cells : devoted to molecular & cellular mechanisms 2000) 2 3 60
  3. Serum long non-coding RNA, snoRNA host gene 5 level as a new tumor marker of malignant melanoma. (PMID: 26440365) Ichigozaki Y … Ihn H (Experimental dermatology 2016) 3 60
  4. Strong cis-acting expression quantitative trait loci for the genes encoding SNHG5 and PEX6. (PMID: 28033303) Lee J … Lee C (Medicine 2016) 3 60
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60

Products for SNHG5 Gene

Sources for SNHG5 Gene

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