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Aliases for SNHG4 Gene

Subcategory (RNA class) for SNHG4 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SNHG4 Gene

  • Small Nucleolar RNA Host Gene 4 2 3 5
  • Small Nucleolar RNA Host Gene 4 (Non-Protein Coding) 2 3
  • Small Nucleolar RNA Host Gene (Non-Protein Coding) 4 3
  • Non-Protein Coding RNA 59 2
  • NCRNA00059 3
  • U19 Host 3
  • U19H 3

External Ids for SNHG4 Gene

Previous GeneCards Identifiers for SNHG4 Gene

  • GC05U900619
  • GC05P138610

Summaries for SNHG4 Gene

GeneCards Summary for SNHG4 Gene

SNHG4 (Small Nucleolar RNA Host Gene 4) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNHG4 Gene

Genomics for SNHG4 Gene

Regulatory Elements for SNHG4 Gene

Enhancers for SNHG4 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05G139270 1.8 FANTOM5 Ensembl ENCODE 0.7 +1.3 1295 8.2 MLX CREB3L1 FEZF1 DMAP1 YY1 ZNF143 ZNF263 SP3 TBX21 MEF2D SLC23A1 DNAJC18 PURA KDM3B LOC105379194 MATR3 LRRTM2 ENSG00000252213 ENSG00000280987 SNHG4
GH05G139261 1.2 Ensembl ENCODE 0.4 -10.9 -10857 1.9 ARID4B SIN3A ZNF2 ETS1 ZNF766 ZNF143 ZNF207 DEK ZNF263 ZHX2 SLC23A1 MATR3 ENSG00000280987 SNHG4 RNU6-572P
GH05G139268 0.8 Ensembl 0.4 -5.1 -5052 0.2 SOX13 CTCF PYGO2 RAD21 EGR1 SCRT2 RELB IKZF2 CREM SCRT1 SLC23A1 ENSG00000280987 MATR3 SNHG4 RNU6-572P
GH05G139245 1 Ensembl ENCODE 0.3 -27.3 -27259 1.1 ETV1 JUN ZKSCAN1 FOSL1 ZFHX2 GLIS2 EGR1 FOS EGR2 MAZ RNU6-572P MATR3 SNHG4 ENSG00000280987
GH05G139251 0.8 ENCODE 0.3 -21.9 -21930 0.7 BCOR CTCF PTBP1 ETV1 ZMYM3 EBF1 RAD21 ADNP ZNF143 SMC3 ENSG00000252213 MATR3 HSPA9 ENSG00000280987 SNHG4 RNU6-572P
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNHG4 on UCSC Golden Path with GeneCards custom track

Promoters for SNHG4 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000187617 398 1801 PKNOX1 MLX WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF766 ZNF143
ENSR00000187617 748 1801 PKNOX1 MLX WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF766 ZNF143

Genomic Location for SNHG4 Gene

Chromosome:
5
Start:
139,273,752 bp from pter
End:
139,283,244 bp from pter
Size:
9,493 bases
Orientation:
Plus strand

Genomic View for SNHG4 Gene

Genes around SNHG4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNHG4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNHG4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNHG4 Gene

Proteins for SNHG4 Gene

Post-translational modifications for SNHG4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNHG4 Gene

Domains & Families for SNHG4 Gene

Gene Families for SNHG4 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNHG4: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNHG4 Gene

Function for SNHG4 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNHG4 Gene

Localization for SNHG4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNHG4 Gene

Pathways & Interactions for SNHG4 Gene

SuperPathways for SNHG4 Gene

No Data Available

Interacting Proteins for SNHG4 Gene

Gene Ontology (GO) - Biological Process for SNHG4 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNHG4 Gene

Transcripts for SNHG4 Gene

mRNA/cDNA for SNHG4 Gene

(8) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNHG4 Gene

No ASD Table

Relevant External Links for SNHG4 Gene

GeneLoc Exon Structure for
SNHG4
ECgene alternative splicing isoforms for
SNHG4

Expression for SNHG4 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNHG4 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNHG4 Gene:

SNHG4
genes like me logo Genes that share expression patterns with SNHG4: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNHG4 Gene

Orthologs for SNHG4 Gene

Evolution for SNHG4 Gene

ENSEMBL:
Gene Tree for SNHG4 (if available)
TreeFam:
Gene Tree for SNHG4 (if available)

No data available for Orthologs for SNHG4 Gene

Paralogs for SNHG4 Gene

No data available for Paralogs for SNHG4 Gene

Variants for SNHG4 Gene

Sequence variations from dbSNP and Humsavar for SNHG4 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs765907489 Likely benign 139,273,887(+) CTTCT(A/G)CCCTT nc-transcript-variant, utr-variant-5-prime
rs773123084 Likely benign 139,273,746(+) GGGCT(A/G)GGCCT upstream-variant-2KB
rs779721416 Uncertain significance 139,273,881(+) GCGCC(C/T)CTTCT nc-transcript-variant, utr-variant-5-prime
rs11242456 Benign 139,273,920(+) CAAAC(C/G/T)CAGCC nc-transcript-variant, utr-variant-5-prime
rs141402332 Benign 139,279,060(+) CTTCA(C/T)CTGAA nc-transcript-variant, downstream-variant-500B, utr-variant-5-prime

Structural Variations from Database of Genomic Variants (DGV) for SNHG4 Gene

Variant ID Type Subtype PubMed ID
esv3606937 CNV loss 21293372

Relevant External Links for SNHG4 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNHG4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNHG4 Gene

Disorders for SNHG4 Gene

Relevant External Links for SNHG4

Genetic Association Database (GAD)
SNHG4
Human Genome Epidemiology (HuGE) Navigator
SNHG4
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNHG4

No disorders were found for SNHG4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNHG4 Gene

Publications for SNHG4 Gene

  1. Integrated genomic analysis implicates haploinsufficiency of multiple chromosome 5q31.2 genes in de novo myelodysplastic syndromes pathogenesis. (PMID: 19240791) Graubert T.A. … Walter M.J. (PLoS ONE 2009) 3 46 64
  2. Human U19 intron-encoded snoRNA is processed from a long primary transcript that possesses little potential for protein coding. (PMID: 9630250) Bortolin M.L. … Kiss T. (RNA 1998) 2 3 64
  3. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A. … Hentze M.W. (Cell 2012) 3 64
  4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  5. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R. … Stanton L.W. (Nat. Biotechnol. 2004) 3 64

Products for SNHG4 Gene

Sources for SNHG4 Gene

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