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Aliases for SNHG3 Gene

Subcategory (RNA class) for SNHG3 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SNHG3 Gene

  • Small Nucleolar RNA Host Gene 3 2 3 5
  • Small Nucleolar RNA Host Gene 3 (Non-Protein Coding) 2 3
  • Small Nucleolar RNA Host Gene (Non-Protein Coding) 3 3
  • U17 Small Nucleolar RNA Host 3
  • Non-Protein Coding RNA 14 2
  • RNA, U17D Small Nucleolar 2
  • RNA, U17C Small Nucleolar 2
  • NCRNA00014 3
  • U17HG-AB 3
  • U17HG-A 3
  • RNU17C 3
  • RNU17D 3
  • U17HG 3

External Ids for SNHG3 Gene

Previous HGNC Symbols for SNHG3 Gene

  • RNU17D
  • RNU17C

Previous GeneCards Identifiers for SNHG3 Gene

  • GC01U901415
  • GC01P028832
  • GC01P027087

Summaries for SNHG3 Gene

GeneCards Summary for SNHG3 Gene

SNHG3 (Small Nucleolar RNA Host Gene 3) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNHG3 Gene

Genomics for SNHG3 Gene

Regulatory Elements for SNHG3 Gene

Enhancers for SNHG3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F028881 1.8 FANTOM5 Ensembl ENCODE 18.6 +379.3 379267 6.8 CREB3L1 MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF416 ZNF143 ZNF548 TRNAU1AP SNHG12 GMEB1 ENSG00000237934 PHACTR4 TMEM200B SNORA73B SNHG3 LINC01756 ENSG00000228176
GH01F028345 1.3 Ensembl ENCODE 21 -159.6 -159629 1.5 ATF1 ARNT ARID4B ZNF2 GTF3C2 FOS SP3 JUNB ZNF623 ZNF518A GMEB1 SNHG3 SNORA73B TRNAU1AP PHACTR4 SNHG12 ENSG00000237934 SESN2 RCC1 PRDX3P2
GH01F028350 1.3 Ensembl ENCODE 21 -153.0 -153016 4.3 HDGF ATF1 PKNOX1 ARNT ZNF48 GTF3C2 ELK1 FOS SP3 SP5 PHACTR4 GMEB1 ENSG00000237934 SNHG3 SNORA73B TRNAU1AP SNHG12 MED18 SESN2 RCC1
GH01F028504 1.2 ENCODE 21.4 +2.3 2266 6.6 HDGF PKNOX1 ARNT CREB3L1 MLX WRNIP1 ARID4B SIN3A DMAP1 YBX1 PHACTR4 GMEB1 SNHG12 SNORA73B SNHG3 ENSG00000237934 TRNAU1AP TMEM200B ENSG00000231344 AHDC1
GH01F028579 1.2 ENCODE 21.1 +75.3 75258 4.5 HDGF PKNOX1 CREB3L1 WRNIP1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 PHACTR4 GMEB1 SNHG12 TMEM200B TRNAU1AP SNORA73B ENSG00000237934 ENSG00000231344 SNHG3 LINC01756
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNHG3 on UCSC Golden Path with GeneCards custom track

Promoters for SNHG3 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000669436 857 3601 PKNOX1 ARNT CREB3L1 MLX WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1

Genomic Location for SNHG3 Gene

Chromosome:
1
Start:
28,505,943 bp from pter
End:
28,510,892 bp from pter
Size:
4,950 bases
Orientation:
Plus strand

Genomic View for SNHG3 Gene

Genes around SNHG3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNHG3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNHG3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNHG3 Gene

Proteins for SNHG3 Gene

Post-translational modifications for SNHG3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNHG3 Gene

Domains & Families for SNHG3 Gene

Gene Families for SNHG3 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNHG3: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNHG3 Gene

Function for SNHG3 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNHG3 Gene

Localization for SNHG3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNHG3 Gene

Pathways & Interactions for SNHG3 Gene

SuperPathways for SNHG3 Gene

No Data Available

Interacting Proteins for SNHG3 Gene

Gene Ontology (GO) - Biological Process for SNHG3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNHG3 Gene

Transcripts for SNHG3 Gene

mRNA/cDNA for SNHG3 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNHG3 Gene

No ASD Table

Relevant External Links for SNHG3 Gene

GeneLoc Exon Structure for
SNHG3
ECgene alternative splicing isoforms for
SNHG3

Expression for SNHG3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNHG3 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNHG3 Gene:

SNHG3
genes like me logo Genes that share expression patterns with SNHG3: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNHG3 Gene

Orthologs for SNHG3 Gene

Evolution for SNHG3 Gene

ENSEMBL:
Gene Tree for SNHG3 (if available)
TreeFam:
Gene Tree for SNHG3 (if available)

No data available for Orthologs for SNHG3 Gene

Paralogs for SNHG3 Gene

No data available for Paralogs for SNHG3 Gene

Variants for SNHG3 Gene

Sequence variations from dbSNP and Humsavar for SNHG3 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1051376 -- 28,509,096(+) ccacg(C/G)ccagc intron-variant, nc-transcript-variant, downstream-variant-500B
rs111328988 -- 28,509,132(+) CTGTT(C/G/T)TGCAG intron-variant, nc-transcript-variant, downstream-variant-500B
rs112223650 -- 28,507,633(+) GGAGT(C/T)GCTCT intron-variant, downstream-variant-500B, upstream-variant-2KB
rs112558466 -- 28,510,738(+) AGTCC(A/T)CAACT intron-variant, nc-transcript-variant
rs112742562 -- 28,507,635(+) AGTCG(A/C/T)TCTGT intron-variant, downstream-variant-500B, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNHG3 Gene

Variant ID Type Subtype PubMed ID
nsv947421 CNV duplication 23825009
nsv545919 CNV loss 21841781
nsv545916 CNV gain 21841781
nsv480107 CNV novel sequence insertion 20440878
nsv479597 CNV novel sequence insertion 20440878
nsv479542 CNV novel sequence insertion 20440878
esv3585587 CNV gain 21293372
esv3585585 CNV loss 21293372
esv3559994 CNV deletion 23714750
esv2657760 CNV deletion 23128226

Relevant External Links for SNHG3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNHG3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNHG3 Gene

Disorders for SNHG3 Gene

Relevant External Links for SNHG3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNHG3

No disorders were found for SNHG3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNHG3 Gene

Publications for SNHG3 Gene

  1. The host gene for intronic U17 small nucleolar RNAs in mammals has no protein-coding potential and is a member of the 5'-terminal oligopyrimidine gene family. (PMID: 9671460) Pelczar P. … Filipowicz W. (Mol. Cell. Biol. 1998) 2 3 22 64
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64
  5. Intronic U50 small-nucleolar-RNA (snoRNA) host gene of no protein-coding potential is mapped at the chromosome breakpoint t(3;6)(q27;q15) of human B-cell lymphoma. (PMID: 10792466) Tanaka R. … Mori S. (Genes Cells 2000) 22 64

Products for SNHG3 Gene

Sources for SNHG3 Gene

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