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Aliases for SNHG3 Gene

Subcategory (RNA class) for SNHG3 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for SNHG3 Gene

  • Small Nucleolar RNA Host Gene 3 2 3
  • Small Nucleolar RNA Host Gene 3 (Non-Protein Coding) 2 3
  • RNU17D 3 6
  • U17HG 3 6
  • Small Nucleolar RNA Host Gene (Non-Protein Coding) 3 3
  • U17 Small Nucleolar RNA Host 3
  • Non-Protein Coding RNA 14 2
  • RNA, U17D Small Nucleolar 2
  • RNA, U17C Small Nucleolar 2
  • NCRNA00014 3
  • U17HG-AB 3
  • U17HG-A 3
  • RNU17C 3

External Ids for SNHG3 Gene

ORGUL Members for SNHG3 Gene

Previous HGNC Symbols for SNHG3 Gene

  • RNU17D
  • RNU17C

Previous GeneCards Identifiers for SNHG3 Gene

  • GC01U901415
  • GC01P028832
  • GC01P027087

Summaries for SNHG3 Gene

GeneCards Summary for SNHG3 Gene

SNHG3 (Small Nucleolar RNA Host Gene 3) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNHG3 Gene

Genomics for SNHG3 Gene

Genomic Location for SNHG3 Gene

Start:
28,505,943 bp from pter
End:
28,510,892 bp from pter
Size:
4,950 bases
Orientation:
Plus strand

Genomic View for SNHG3 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNHG3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNHG3 Gene

No data available for Regulatory Elements for SNHG3 Gene

Proteins for SNHG3 Gene

Post-translational modifications for SNHG3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNHG3 Gene

Domains for SNHG3 Gene

Gene Families for SNHG3 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNHG3: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNHG3 Gene

Function for SNHG3 Gene

Phenotypes for SNHG3 Gene

MGI mutant phenotypes for SNHG3:
inferred from 1 alleles
genes like me logo Genes that share phenotypes with SNHG3: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNHG3 Gene

Localization for SNHG3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNHG3 Gene

Pathways for SNHG3 Gene

SuperPathways for SNHG3 Gene

No Data Available

Interacting Proteins for SNHG3 Gene

Gene Ontology (GO) - Biological Process for SNHG3 Gene

None

No data available for Pathways by source for SNHG3 Gene

Transcripts for SNHG3 Gene

mRNA/cDNA for SNHG3 Gene

(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for SNHG3

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNHG3 Gene

No ASD Table

Relevant External Links for SNHG3 Gene

GeneLoc Exon Structure for
SNHG3
ECgene alternative splicing isoforms for
SNHG3

Expression for SNHG3 Gene

mRNA expression in normal human tissues for SNHG3 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

genes like me logo Genes that share expressions with SNHG3: view

In Situ Assay Products

No data available for mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for SNHG3 Gene

Orthologs for SNHG3 Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for SNHG3 Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
Mammalia Snhg3 16
Species with no ortholog for SNHG3:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNHG3 Gene

ENSEMBL:
Gene Tree for SNHG3 (if available)
TreeFam:
Gene Tree for SNHG3 (if available)

Paralogs for SNHG3 Gene

No data available for Paralogs for SNHG3 Gene

Variants for SNHG3 Gene

Structural Variations from Database of Genomic Variants (DGV) for SNHG3 Gene

Variant ID Type Subtype PubMed ID
esv2657760 CNV Deletion 23128226

Relevant External Links for SNHG3 Gene

HapMap Linkage Disequilibrium report
SNHG3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations from dbSNP and Humsavar for SNHG3 Gene

Disorders for SNHG3 Gene

No disorders were found for SNHG3 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for SNHG3 Gene

Publications for SNHG3 Gene

  1. The host gene for intronic U17 small nucleolar RNAs in mammals has no protein-coding potential and is a member of the 5'-terminal oligopyrimidine gene family. (PMID: 9671460) Pelczar P. … Filipowicz W. (Mol. Cell. Biol. 1998) 2 3 23
  2. Intronic U50 small-nucleolar-RNA (snoRNA) host gene of no protein-coding potential is mapped at the chromosome breakpoint t(3;6)(q27;q15) of human B-cell lymphoma. (PMID: 10792466) Tanaka R. … Mori S. (Genes Cells 2000) 23
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  5. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3

Products for SNHG3 Gene

Sources for SNHG3 Gene

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