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Aliases for SNHG3 Gene

Subcategory (RNA class) for SNHG3 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SNHG3 Gene

  • Small Nucleolar RNA Host Gene 3 2 3 5
  • Small Nucleolar RNA Host Gene 3 (Non-Protein Coding) 2 3
  • Small Nucleolar RNA Host Gene (Non-Protein Coding) 3 3
  • U17 Small Nucleolar RNA Host 3
  • Non-Protein Coding RNA 14 2
  • RNA, U17D Small Nucleolar 2
  • RNA, U17C Small Nucleolar 2
  • NCRNA00014 3
  • U17HG-AB 3
  • U17HG-A 3
  • RNU17C 3
  • RNU17D 3
  • U17HG 3

External Ids for SNHG3 Gene

Previous HGNC Symbols for SNHG3 Gene

  • RNU17D
  • RNU17C

Previous GeneCards Identifiers for SNHG3 Gene

  • GC01U901415
  • GC01P028832
  • GC01P027087

Summaries for SNHG3 Gene

GeneCards Summary for SNHG3 Gene

SNHG3 (Small Nucleolar RNA Host Gene 3) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SNHG3 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNHG3 Gene

Genomics for SNHG3 Gene

GeneHancer (GH) Regulatory Elements for SNHG3 Gene

Promoters and enhancers for SNHG3 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I028881 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 18.8 +379.3 379299 6.8 CLOCK MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 EPB41 LOC105376898 SRSF4 TRNAU1AP GMEB1 SNHG12 YTHDF2 PHACTR4 EYA3 TMEM200B
GH01I028647 Promoter/Enhancer 1.7 Ensembl ENCODE 29.5 +142.5 142502 2.7 CLOCK ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 ENSG00000270103 GC01P028651 GC01P028669 GC01P028670 GC01P028671 GC01P028672 RNU11 SRSF4 GMEB1 TRNAU1AP
GH01I028504 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 21.6 +2.3 2266 6.6 CLOCK MLX YBX1 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 SNORA73B RCC1 SNORA73A SRSF4 GMEB1 TRNAU1AP SNHG12 PHACTR4 YTHDF2 SNHG3
GH01I028578 Promoter/Enhancer 1.6 Ensembl ENCODE 29.6 +75.3 75257 4.5 ZFP64 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 NFYC SNHG12 GC01M028584 GC01M028612 GC01M028618 GC01M028623 GC01M028624 GC01M028625 GC01M028628 PIR59489 SNORA16A
GH01I028171 Promoter/Enhancer 2.2 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 18.8 -331.5 -331542 6.4 HDGF PKNOX1 FOXA2 SMAD1 ARNT FEZF1 YBX1 IRF4 ZNF766 ZNF213 PTAFR SNHG12 GMEB1 TRNAU1AP ACTG1P20 YTHDF2 PHACTR4 NPM1P39 SNORA73B ENSG00000231344
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNHG3 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SNHG3 Gene

Genomic Locations for SNHG3 Gene
chr1:28,505,943-28,510,892
(GRCh38/hg38)
Size:
4,950 bases
Orientation:
Plus strand
chr1:28,832,455-28,837,404
(GRCh37/hg19)

Genomic View for SNHG3 Gene

Genes around SNHG3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNHG3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNHG3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNHG3 Gene

Proteins for SNHG3 Gene

Post-translational modifications for SNHG3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNHG3 Gene

Domains & Families for SNHG3 Gene

Gene Families for SNHG3 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNHG3: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNHG3 Gene

Function for SNHG3 Gene

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNHG3 Gene

Localization for SNHG3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNHG3 Gene

Pathways & Interactions for SNHG3 Gene

SuperPathways for SNHG3 Gene

No Data Available

Interacting Proteins for SNHG3 Gene

Gene Ontology (GO) - Biological Process for SNHG3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNHG3 Gene

Drugs & Compounds for SNHG3 Gene

No Compound Related Data Available

Transcripts for SNHG3 Gene

mRNA/cDNA for SNHG3 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNHG3 Gene

No ASD Table

Relevant External Links for SNHG3 Gene

GeneLoc Exon Structure for
SNHG3
ECgene alternative splicing isoforms for
SNHG3

Expression for SNHG3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNHG3 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNHG3 Gene:

SNHG3
genes like me logo Genes that share expression patterns with SNHG3: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNHG3 Gene

Orthologs for SNHG3 Gene

Evolution for SNHG3 Gene

ENSEMBL:
Gene Tree for SNHG3 (if available)
TreeFam:
Gene Tree for SNHG3 (if available)

No data available for Orthologs for SNHG3 Gene

Paralogs for SNHG3 Gene

No data available for Paralogs for SNHG3 Gene

Variants for SNHG3 Gene

Sequence variations from dbSNP and Humsavar for SNHG3 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000175115 -- 28,510,822(+) T/C/G non_coding_transcript_variant
rs1000227428 -- 28,510,489(+) T/C non_coding_transcript_variant
rs1000718042 -- 28,505,896(+) G/T upstream_transcript_variant
rs1000887445 -- 28,509,812(+) G/A non_coding_transcript_variant
rs1001089666 -- 28,506,792(+) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for SNHG3 Gene

Variant ID Type Subtype PubMed ID
esv2657760 CNV deletion 23128226
esv3559994 CNV deletion 23714750
esv3585585 CNV loss 21293372
esv3585587 CNV gain 21293372
nsv479542 CNV novel sequence insertion 20440878
nsv479597 CNV novel sequence insertion 20440878
nsv480107 CNV novel sequence insertion 20440878
nsv545916 CNV gain 21841781
nsv545919 CNV loss 21841781
nsv947421 CNV duplication 23825009

Additional Variant Information for SNHG3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNHG3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNHG3 Gene

Disorders for SNHG3 Gene

Additional Disease Information for SNHG3

No disorders were found for SNHG3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNHG3 Gene

Publications for SNHG3 Gene

  1. The host gene for intronic U17 small nucleolar RNAs in mammals has no protein-coding potential and is a member of the 5'-terminal oligopyrimidine gene family. (PMID: 9671460) Pelczar P … Filipowicz W (Molecular and cellular biology 1998) 2 3 22 58
  2. The ribosome biogenesis factor yUtp23/hUTP23 coordinates key interactions in the yeast and human pre-40S particle and hUTP23 contains an essential PIN domain. (PMID: 28082392) Wells GR … Schneider C (Nucleic acids research 2017) 3 58
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for SNHG3 Gene

Sources for SNHG3 Gene

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