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Aliases for SNHG22 Gene

Subcategory (RNA class) for SNHG22 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SNHG22 Gene

  • Small Nucleolar RNA Host Gene 22 2 3 5
  • Small Nucleolar RNA Host Gene 22 (Non-Protein Coding) 2 3
  • SCARNA17HG 3
  • SCARNA17 3

External Ids for SNHG22 Gene

Previous GeneCards Identifiers for SNHG22 Gene

  • GC18U900813

Summaries for SNHG22 Gene

GeneCards Summary for SNHG22 Gene

SNHG22 (Small Nucleolar RNA Host Gene 22) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNHG22 Gene

Genomics for SNHG22 Gene

Regulatory Elements for SNHG22 Gene

Enhancers for SNHG22 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH18G050673 0.4 dbSUPER 4.1 +860.6 860590 1.6 ATF2 SNHG22 ENSG00000267713 LOC105372116
GH18G050671 0.2 dbSUPER 4.7 +858.3 858318 0.9 SNHG22 ENSG00000267713 LOC105372116
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNHG22 on UCSC Golden Path with GeneCards custom track

Promoters for SNHG22 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000103257 -423 2401 HDGF PKNOX1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF143 ZNF207

Genomic Location for SNHG22 Gene

Chromosome:
18
Start:
49,814,023 bp from pter
End:
49,851,059 bp from pter
Size:
37,037 bases
Orientation:
Plus strand

Genomic View for SNHG22 Gene

Genes around SNHG22 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNHG22 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNHG22 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNHG22 Gene

Proteins for SNHG22 Gene

Post-translational modifications for SNHG22 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNHG22 Gene

Domains & Families for SNHG22 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNHG22 Gene

Function for SNHG22 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNHG22 Gene

Localization for SNHG22 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNHG22 Gene

Pathways & Interactions for SNHG22 Gene

SuperPathways for SNHG22 Gene

No Data Available

Interacting Proteins for SNHG22 Gene

Gene Ontology (GO) - Biological Process for SNHG22 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNHG22 Gene

Transcripts for SNHG22 Gene

mRNA/cDNA for SNHG22 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNHG22 Gene

No ASD Table

Relevant External Links for SNHG22 Gene

GeneLoc Exon Structure for
SNHG22
ECgene alternative splicing isoforms for
SNHG22

Expression for SNHG22 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNHG22 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNHG22 Gene:

SNHG22
genes like me logo Genes that share expression patterns with SNHG22: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNHG22 Gene

Orthologs for SNHG22 Gene

Evolution for SNHG22 Gene

ENSEMBL:
Gene Tree for SNHG22 (if available)
TreeFam:
Gene Tree for SNHG22 (if available)

No data available for Orthologs for SNHG22 Gene

Paralogs for SNHG22 Gene

No data available for Paralogs for SNHG22 Gene

Variants for SNHG22 Gene

Sequence variations from dbSNP and Humsavar for SNHG22 Gene

SNP ID Clin Chr 18 pos Sequence Context AA Info Type
rs112417235 Likely benign 49,837,593(+) GATCA(A/C/T)GTAGA intron-variant, reference, missense
rs11874243 Likely benign 49,826,372(+) TGATC(G/T)ACTTT intron-variant, utr-variant-3-prime
rs11876859 Likely benign 49,823,724(+) GGAAC(G/T)CTAAC intron-variant, utr-variant-3-prime
rs143115573 Likely benign 49,825,513(+) TTACT(A/G)TTTGG intron-variant, utr-variant-3-prime
rs148887718 Likely benign 49,824,861(+) GACAA(C/G)TGATT intron-variant, utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for SNHG22 Gene

Variant ID Type Subtype PubMed ID
nsv1138624 CNV deletion 24896259
nsv516056 CNV gain 19592680
nsv576863 CNV gain 21841781
nsv576865 CNV loss 21841781
nsv828229 CNV gain 20364138
nsv960280 CNV duplication 23825009
nsv962880 CNV duplication 23825009
nsv978630 CNV duplication 23825009

Relevant External Links for SNHG22 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNHG22

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNHG22 Gene

Disorders for SNHG22 Gene

Relevant External Links for SNHG22

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNHG22

No disorders were found for SNHG22 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNHG22 Gene

Publications for SNHG22 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for SNHG22 Gene

Sources for SNHG22 Gene

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