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Aliases for SNHG21 Gene

Subcategory (RNA class) for SNHG21 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SNHG21 Gene

  • Small Nucleolar RNA Host Gene 21 2 3 5
  • Small Nucleolar RNA Host Gene 21 (Non-Protein Coding) 2 3
  • FSD2 Antisense RNA 1 2 3
  • RP11-752G15.6 3
  • SCARNA15HG 3
  • FSD2-AS1 3

External Ids for SNHG21 Gene

Previous GeneCards Identifiers for SNHG21 Gene

  • GC15P083422

Summaries for SNHG21 Gene

GeneCards Summary for SNHG21 Gene

SNHG21 (Small Nucleolar RNA Host Gene 21) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNHG21 Gene

Genomics for SNHG21 Gene

Regulatory Elements for SNHG21 Gene

Enhancers for SNHG21 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15F083010 1.1 ENCODE 32.6 +260.9 260896 2.8 CREB3L1 WRNIP1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 DEK C15orf40 FAM103A1 SNHG21 RPL9P9 CPEB1 CPEB1-AS1 EFL1 AP3B2 WHAMM ENSG00000260579
GH15F082043 1.4 FANTOM5 ENCODE 12.7 -704.5 -704493 5.7 PKNOX1 CREB3L1 SIN3A ZNF2 ZNF143 KLF13 ZNF263 SP3 NFYC REST SNHG21 MEX3B ENSG00000259445 LOC105370923
GH15F083091 1.6 FANTOM5 Ensembl ENCODE 11 +342.0 341997 1.9 PKNOX1 ATF1 ARNT GATA2 NCOA1 REST MEF2D SMARCA4 NBN HMBOX1 BTBD1 SNHG21 C15orf40 HOMER2 TM6SF1 GC15P083114
GH15F081887 1.1 VISTA ENCODE 12.9 -861.8 -861831 2.3 INSM2 FEZF1 ZNF2 SCRT2 FOS OVOL3 ZEB2 TSHZ1 ZNF843 ZFP69B ENSG00000259649 SNHG21 MESDC2 WHAMM GC15M081842 GC15P081908
GH15F083446 1 ENCODE 12.9 +696.6 696626 1.5 CREB3L1 SIN3A ZNF2 GLIS2 FOS ZNF202 ZNF263 SP3 REST SMARCB1 C15orf40 SNHG21 WHAMM GOLGA6L4 SH3GL3 GOLGA2P7 GC15M083457
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNHG21 on UCSC Golden Path with GeneCards custom track

Promoters for SNHG21 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001454474 136 2201 HDGF PKNOX1 ARNT CREB3L1 MLX WRNIP1 ARID4B SIN3A DMAP1 ZNF2

Genomic Location for SNHG21 Gene

Chromosome:
15
Start:
82,750,564 bp from pter
End:
82,757,206 bp from pter
Size:
6,643 bases
Orientation:
Plus strand

Genomic View for SNHG21 Gene

Genes around SNHG21 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNHG21 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNHG21 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNHG21 Gene

Proteins for SNHG21 Gene

Post-translational modifications for SNHG21 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNHG21 Gene

Domains & Families for SNHG21 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNHG21 Gene

Function for SNHG21 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNHG21 Gene

Localization for SNHG21 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNHG21 Gene

Pathways & Interactions for SNHG21 Gene

SuperPathways for SNHG21 Gene

No Data Available

Interacting Proteins for SNHG21 Gene

Gene Ontology (GO) - Biological Process for SNHG21 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNHG21 Gene

Transcripts for SNHG21 Gene

mRNA/cDNA for SNHG21 Gene

(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNHG21 Gene

No ASD Table

Relevant External Links for SNHG21 Gene

GeneLoc Exon Structure for
SNHG21
ECgene alternative splicing isoforms for
SNHG21

Expression for SNHG21 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNHG21 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNHG21 Gene:

SNHG21
genes like me logo Genes that share expression patterns with SNHG21: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNHG21 Gene

Orthologs for SNHG21 Gene

Evolution for SNHG21 Gene

ENSEMBL:
Gene Tree for SNHG21 (if available)
TreeFam:
Gene Tree for SNHG21 (if available)

No data available for Orthologs for SNHG21 Gene

Paralogs for SNHG21 Gene

No data available for Paralogs for SNHG21 Gene

Variants for SNHG21 Gene

Sequence variations from dbSNP and Humsavar for SNHG21 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs1105835 -- 82,751,361(-) ACACG(C/G)ATTTT intron-variant
rs112428296 -- 82,753,681(+) TGCTT(G/T)GTATC intron-variant
rs1124911 -- 82,750,492(+) TAATG(C/T)CACGC upstream-variant-2KB
rs112768407 -- 82,752,361(+) TTTCC(A/G)GTAGC intron-variant
rs1128451 -- 82,757,122(+) AAGTT(A/G)CTAAT nc-transcript-variant, utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for SNHG21 Gene

Variant ID Type Subtype PubMed ID
nsv817702 CNV loss 17921354
nsv471687 CNV gain 15918152
nsv469557 CNV loss 16826518
nsv1120052 OTHER inversion 24896259
esv34318 CNV loss 17911159
esv2674021 CNV deletion 23128226
dgv2637n100 CNV gain 25217958

Relevant External Links for SNHG21 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNHG21

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNHG21 Gene

Disorders for SNHG21 Gene

Relevant External Links for SNHG21

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNHG21

No disorders were found for SNHG21 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNHG21 Gene

Publications for SNHG21 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  2. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3 64
  3. Generation and analysis of 280,000 human expressed sequence tags. (PMID: 8889549) Hillier L.D. … Marra M. (Genome Res. 1996) 3 64

Products for SNHG21 Gene

Sources for SNHG21 Gene

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