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Aliases for SNHG21 Gene

Subcategory (RNA class) for SNHG21 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SNHG21 Gene

  • Small Nucleolar RNA Host Gene 21 2 3 5
  • Small Nucleolar RNA Host Gene 21 (Non-Protein Coding) 2 3
  • FSD2 Antisense RNA 1 2 3
  • RP11-752G15.6 3
  • SCARNA15HG 3
  • FSD2-AS1 3

External Ids for SNHG21 Gene

Previous GeneCards Identifiers for SNHG21 Gene

  • GC15P083422

Summaries for SNHG21 Gene

GeneCards Summary for SNHG21 Gene

SNHG21 (Small Nucleolar RNA Host Gene 21) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNHG21 Gene

Genomics for SNHG21 Gene

Regulatory Elements for SNHG21 Gene

Enhancers for SNHG21 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around SNHG21 on UCSC Golden Path with GeneCards custom track

Promoters for SNHG21 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around SNHG21 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNHG21 Gene

Chromosome:
15
Start:
82,750,564 bp from pter
End:
82,757,206 bp from pter
Size:
6,643 bases
Orientation:
Plus strand

Genomic View for SNHG21 Gene

Genes around SNHG21 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNHG21 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNHG21 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNHG21 Gene

Proteins for SNHG21 Gene

Post-translational modifications for SNHG21 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNHG21 Gene

Domains & Families for SNHG21 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNHG21 Gene

Function for SNHG21 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNHG21 Gene

Localization for SNHG21 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNHG21 Gene

Pathways & Interactions for SNHG21 Gene

SuperPathways for SNHG21 Gene

No Data Available

Interacting Proteins for SNHG21 Gene

Gene Ontology (GO) - Biological Process for SNHG21 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNHG21 Gene

Drugs & Compounds for SNHG21 Gene

No Compound Related Data Available

Transcripts for SNHG21 Gene

mRNA/cDNA for SNHG21 Gene

(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNHG21 Gene

No ASD Table

Relevant External Links for SNHG21 Gene

GeneLoc Exon Structure for
SNHG21
ECgene alternative splicing isoforms for
SNHG21

Expression for SNHG21 Gene

mRNA expression in normal human tissues for SNHG21 Gene

genes like me logo Genes that share expression patterns with SNHG21: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for SNHG21 Gene

Orthologs for SNHG21 Gene

Evolution for SNHG21 Gene

ENSEMBL:
Gene Tree for SNHG21 (if available)
TreeFam:
Gene Tree for SNHG21 (if available)

No data available for Orthologs for SNHG21 Gene

Paralogs for SNHG21 Gene

No data available for Paralogs for SNHG21 Gene

Variants for SNHG21 Gene

Sequence variations from dbSNP and Humsavar for SNHG21 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs1105835 -- 82,751,361(-) ACACG(C/G)ATTTT intron-variant
rs1124911 -- 82,750,492(+) TAATG(C/T)CACGC upstream-variant-2KB
rs7178109 -- 82,749,241(+) cacca(A/C)gcccg upstream-variant-2KB
rs12908048 -- 82,752,627(+) ctcag(A/G)ctggt intron-variant
rs7179851 -- 82,753,828(+) AGCCA(A/G)ATACT intron-variant

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) , Variation tolerance and Relevant External Links for SNHG21 Gene

Disorders for SNHG21 Gene

Relevant External Links for SNHG21

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNHG21

No disorders were found for SNHG21 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNHG21 Gene

Publications for SNHG21 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 67
  2. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3
  3. Generation and analysis of 280,000 human expressed sequence tags. (PMID: 8889549) Hillier L.D. … Marra M. (Genome Res. 1996) 3

Products for SNHG21 Gene

Sources for SNHG21 Gene

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