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Aliases for SNHG21 Gene

Subcategory (RNA class) for SNHG21 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for SNHG21 Gene

  • Small Nucleolar RNA Host Gene 21 2 3
  • Small Nucleolar RNA Host Gene 21 (Non-Protein Coding) 2 3
  • FSD2 Antisense RNA 1 2 3
  • RP11-752G15.6 3
  • SCARNA15HG 3
  • FSD2-AS1 3

External Ids for SNHG21 Gene

Summaries for SNHG21 Gene

GeneCards Summary for SNHG21 Gene

SNHG21 (Small Nucleolar RNA Host Gene 21) is a RNA Gene, and belongs to lncRNA RNA class.

fRNAdb sequence ontologies for SNHG21 Gene - the ORGUL cluster for this gene includes several descriptions:

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

  • antisense_RNA: Antisense RNA is RNA that is transcribed from the coding, rather than the template, strand of DNA. It is therefore complementary to mRNA.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNHG21 Gene

Genomics for SNHG21 Gene

Genomic Location for SNHG21 Gene

Start:
82,750,564 bp from pter
End:
82,757,206 bp from pter
Size:
6,643 bases
Orientation:
Plus strand

Genomic View for SNHG21 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNHG21 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNHG21 Gene

No data available for Regulatory Elements for SNHG21 Gene

Proteins for SNHG21 Gene

Post-translational modifications for SNHG21 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNHG21 Gene

Domains for SNHG21 Gene

Gene Families for SNHG21 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs
genes like me logo Genes that share domains with SNHG21: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for SNHG21 Gene

Function for SNHG21 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNHG21 Gene

Localization for SNHG21 Gene

No data available for Gene Ontology (GO) - Cellular Components for SNHG21 Gene

Pathways for SNHG21 Gene

SuperPathways for SNHG21 Gene

No Data Available

Interacting Proteins for SNHG21 Gene

Gene Ontology (GO) - Biological Process for SNHG21 Gene

None

No data available for Pathways by source for SNHG21 Gene

Transcripts for SNHG21 Gene

mRNA/cDNA for SNHG21 Gene

(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNHG21 Gene

No ASD Table

Relevant External Links for SNHG21 Gene

GeneLoc Exon Structure for
SNHG21
ECgene alternative splicing isoforms for
SNHG21

Expression for SNHG21 Gene

mRNA expression in normal human tissues for SNHG21 Gene

genes like me logo Genes that share expressions with SNHG21: view

Orthologs for SNHG21 Gene

Evolution for SNHG21 Gene

ENSEMBL:
Gene Tree for SNHG21 (if available)
TreeFam:
Gene Tree for SNHG21 (if available)

No data available for Orthologs for SNHG21 Gene

Paralogs for SNHG21 Gene

No data available for Paralogs for SNHG21 Gene

Variants for SNHG21 Gene

Sequence variations from dbSNP and Humsavar for SNHG21 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type MAF
rs1105835 -- 82,751,361(-) ACACG(C/G)ATTTT intron-variant
rs1124911 -- 82,750,492(+) TAATG(C/T)CACGC upstream-variant-2KB
rs2890313 -- 82,748,701(+) aaaaa(A/C)aattg upstream-variant-2KB
rs7178109 -- 82,749,241(+) cacca(A/C)gcccg upstream-variant-2KB
rs7179851 -- 82,753,828(+) AGCCA(A/G)ATACT intron-variant

Relevant External Links for SNHG21 Gene

HapMap Linkage Disequilibrium report
SNHG21

No data available for Structural Variations from Database of Genomic Variants (DGV) for SNHG21 Gene

Disorders for SNHG21 Gene

No disorders were found for SNHG21 Gene.

No data available for UniProtKB/Swiss-Prot for SNHG21 Gene

Publications for SNHG21 Gene

  1. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3
  2. Generation and analysis of 280,000 human expressed sequence tags. (PMID: 8889549) Hillier L.D. … Marra M. (Genome Res. 1996) 3
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3

Products for SNHG21 Gene

Sources for SNHG21 Gene

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