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Aliases for SNHG21 Gene

Subcategory (RNA class) for SNHG21 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SNHG21 Gene

  • Small Nucleolar RNA Host Gene 21 2 3 5
  • Small Nucleolar RNA Host Gene 21 (Non-Protein Coding) 2 3
  • FSD2 Antisense RNA 1 2 3
  • RP11-752G15.6 3
  • SCARNA15HG 3
  • FSD2-AS1 3

External Ids for SNHG21 Gene

Previous GeneCards Identifiers for SNHG21 Gene

  • GC15P083422

Summaries for SNHG21 Gene

GeneCards Summary for SNHG21 Gene

SNHG21 (Small Nucleolar RNA Host Gene 21) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SNHG21 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNHG21 Gene

Genomics for SNHG21 Gene

GeneHancer (GH) Regulatory Elements for SNHG21 Gene

Promoters and enhancers for SNHG21 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15I082749 Promoter/Enhancer 1.6 Ensembl ENCODE 550.8 +0.3 272 3.3 HDGF PKNOX1 SMAD1 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 SNHG21 AP3B2 FSD2 HOMER2 C15orf40 HDGFL3 GOLGA6L10 GC15M082753 ENSG00000259442 GC15P082732
GH15I083060 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 11.9 +314.2 314158 7.5 HDGF PKNOX1 SMAD1 FOXA2 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 BTBD1 C15orf40 TM6SF1 SNHG21 FAM103A1 AP3B2 GOLGA6L9 WHAMM MIR4515 GC15P083174
GH15I082043 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE 12.7 -704.5 -704493 5.7 PKNOX1 CLOCK ARNT SIN3A ZNF2 POLR2B ZNF766 CBX5 ZNF143 KLF13 MEX3B SNHG21 ENSG00000259445 LOC105370923
GH15I083446 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE dbSUPER 12.9 +696.7 696651 1.6 CLOCK ATF1 SIN3A ZNF2 ZBTB7B GLIS2 ARID2 FOS ZNF202 SP3 SH3GL3 GOLGA6L4 C15orf40 WHAMM SNHG21 FAM103A1 LOC103171574 CSPG4P11 GOLGA2P7 GC15M083457
GH15I082708 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 12.1 -41.2 -41233 2 ZNF133 ARID4B SIN3A ZNF48 ZNF766 GLIS2 ZNF213 ELK1 ZNF143 KLF7 AP3B2 SAXO2 C15orf40 WHAMM SNHG21 RPL9P9 CPEB1 HDGFL3 EFL1 PIR57194
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNHG21 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SNHG21 Gene

Genomic Locations for SNHG21 Gene
chr15:82,750,564-82,757,206
(GRCh38/hg38)
Size:
6,643 bases
Orientation:
Plus strand
chr15:83,419,316-83,425,958
(GRCh37/hg19)

Genomic View for SNHG21 Gene

Genes around SNHG21 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNHG21 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNHG21 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNHG21 Gene

Proteins for SNHG21 Gene

Post-translational modifications for SNHG21 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNHG21 Gene

Domains & Families for SNHG21 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNHG21 Gene

Function for SNHG21 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNHG21 Gene

Localization for SNHG21 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNHG21 Gene

Pathways & Interactions for SNHG21 Gene

SuperPathways for SNHG21 Gene

No Data Available

Interacting Proteins for SNHG21 Gene

Gene Ontology (GO) - Biological Process for SNHG21 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNHG21 Gene

Drugs & Compounds for SNHG21 Gene

No Compound Related Data Available

Transcripts for SNHG21 Gene

mRNA/cDNA for SNHG21 Gene

(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNHG21 Gene

No ASD Table

Relevant External Links for SNHG21 Gene

GeneLoc Exon Structure for
SNHG21
ECgene alternative splicing isoforms for
SNHG21

Expression for SNHG21 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNHG21 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNHG21 Gene:

SNHG21
genes like me logo Genes that share expression patterns with SNHG21: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNHG21 Gene

Orthologs for SNHG21 Gene

Evolution for SNHG21 Gene

ENSEMBL:
Gene Tree for SNHG21 (if available)
TreeFam:
Gene Tree for SNHG21 (if available)

No data available for Orthologs for SNHG21 Gene

Paralogs for SNHG21 Gene

No data available for Paralogs for SNHG21 Gene

Variants for SNHG21 Gene

Sequence variations from dbSNP and Humsavar for SNHG21 Gene

SNP ID Clin Chr 15 pos Variation AA Info Type
rs1000569515 -- 82,754,458(+) C/T intron_variant
rs1001150361 -- 82,754,205(+) TTTGTTTT/TTT intron_variant
rs1001165510 -- 82,752,468(+) G/A intron_variant
rs1001432006 -- 82,751,660(+) A/G intron_variant
rs1002328522 -- 82,753,888(+) G/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for SNHG21 Gene

Variant ID Type Subtype PubMed ID
dgv2637n100 CNV gain 25217958
esv2674021 CNV deletion 23128226
esv34318 CNV loss 17911159
nsv1120052 OTHER inversion 24896259
nsv469557 CNV loss 16826518
nsv471687 CNV gain 15918152
nsv817702 CNV loss 17921354

Additional Variant Information for SNHG21 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNHG21

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNHG21 Gene

Disorders for SNHG21 Gene

Additional Disease Information for SNHG21

No disorders were found for SNHG21 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNHG21 Gene

Publications for SNHG21 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  2. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 58
  3. Generation and analysis of 280,000 human expressed sequence tags. (PMID: 8889549) Hillier LD … Marra M (Genome research 1996) 3 58

Products for SNHG21 Gene

Sources for SNHG21 Gene

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