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Aliases for SNHG20 Gene

Subcategory (RNA class) for SNHG20 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for SNHG20 Gene

  • Small Nucleolar RNA Host Gene 20 2 3
  • Small Nucleolar RNA Host Gene 20 (Non-Protein Coding) 2 3
  • Long Intergenic Non-Protein Coding RNA 338 2 3
  • Chromosome 17 Open Reading Frame 86 2
  • Non-Protein Coding RNA 338 2
  • SCARNA16HG 3
  • NCRNA00338 3
  • LINC00338 3
  • C17orf86 3

External Ids for SNHG20 Gene

ORGUL Members for SNHG20 Gene

Previous Symbols for SNHG20 Gene

  • C17orf86
  • NCRNA00338
  • LINC00338

Summaries for SNHG20 Gene

GeneCards Summary for SNHG20 Gene

SNHG20 (Small Nucleolar RNA Host Gene 20) is a RNA Gene, and belongs to lncRNA RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNHG20 Gene

Genomics for SNHG20 Gene

Genomic Location for SNHG20 Gene

Start:
77,086,716 bp from pter
End:
77,094,990 bp from pter
Size:
8,275 bases
Orientation:
Plus strand

Genomic View for SNHG20 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNHG20 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNHG20 Gene

No data available for Regulatory Elements for SNHG20 Gene

Proteins for SNHG20 Gene

Post-translational modifications for SNHG20 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNHG20 Gene

Domains for SNHG20 Gene

Gene Families for SNHG20 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs
genes like me logo Genes that share domains with SNHG20: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for SNHG20 Gene

Function for SNHG20 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNHG20 Gene

Localization for SNHG20 Gene

No data available for Gene Ontology (GO) - Cellular Components for SNHG20 Gene

Pathways for SNHG20 Gene

SuperPathways for SNHG20 Gene

No Data Available

Interacting Proteins for SNHG20 Gene

Gene Ontology (GO) - Biological Process for SNHG20 Gene

None

No data available for Pathways by source for SNHG20 Gene

Transcripts for SNHG20 Gene

mRNA/cDNA for SNHG20 Gene

(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNHG20 Gene

No ASD Table

Relevant External Links for SNHG20 Gene

GeneLoc Exon Structure for
SNHG20
ECgene alternative splicing isoforms for
SNHG20

Expression for SNHG20 Gene

mRNA expression in normal human tissues for SNHG20 Gene

genes like me logo Genes that share expressions with SNHG20: view

Orthologs for SNHG20 Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for SNHG20 Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
Mammalia 2810008D09Rik 16
Species with no ortholog for SNHG20:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNHG20 Gene

ENSEMBL:
Gene Tree for SNHG20 (if available)
TreeFam:
Gene Tree for SNHG20 (if available)

Paralogs for SNHG20 Gene

No data available for Paralogs for SNHG20 Gene

Variants for SNHG20 Gene

Relevant External Links for SNHG20 Gene

HapMap Linkage Disequilibrium report
SNHG20

No data available for Sequence variations from dbSNP and Humsavar and Structural Variations from Database of Genomic Variants (DGV) for SNHG20 Gene

Disorders for SNHG20 Gene

No disorders were found for SNHG20 Gene.

No data available for UniProtKB/Swiss-Prot for SNHG20 Gene

Publications for SNHG20 Gene

  1. A computational screen for mammalian pseudouridylation guide H/ACA RNAs. (PMID: 16373490) Schattner P. … Lowe T.M. (RNA 2006) 2 3
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3

Products for SNHG20 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate SNHG20
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for SNHG20
    • Block miRNA regulation of SNHG20 using miScript Target Protectors

    Sources for SNHG20 Gene

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