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Aliases for SNHG20 Gene

Subcategory (RNA class) for SNHG20 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SNHG20 Gene

  • Small Nucleolar RNA Host Gene 20 2 3 5
  • Small Nucleolar RNA Host Gene 20 (Non-Protein Coding) 2 3
  • Long Intergenic Non-Protein Coding RNA 338 2 3
  • Chromosome 17 Open Reading Frame 86 2
  • Non-Protein Coding RNA 338 2
  • SCARNA16HG 3
  • NCRNA00338 3
  • LINC00338 3
  • C17orf86 3

External Ids for SNHG20 Gene

Previous HGNC Symbols for SNHG20 Gene

  • C17orf86
  • NCRNA00338
  • LINC00338

Previous GeneCards Identifiers for SNHG20 Gene

  • GC17P075102

Summaries for SNHG20 Gene

GeneCards Summary for SNHG20 Gene

SNHG20 (Small Nucleolar RNA Host Gene 20) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNHG20 Gene

Genomics for SNHG20 Gene

Regulatory Elements for SNHG20 Gene

Enhancers for SNHG20 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17G077087 1.7 FANTOM5 ENCODE dbSUPER 17.7 +2.7 2748 3.2 CREB3L1 MLX ZFP64 DMAP1 FEZF1 YY1 SLC30A9 ZNF416 ZNF143 SP3 SNHG20 MGAT5B MIR6516 PIR37121
GH17G077114 2 FANTOM5 Ensembl ENCODE dbSUPER 10.3 +37.5 37485 18.7 MLX AGO1 YY1 ZNF143 ZNF263 SP3 TBX21 MEF2D SSRP1 GLIS1 MGAT5B MFSD11 RNU4-47P SEPT9 METTL23 SNHG20 SEC14L1 JMJD6 LOC105371900 LOC105371901
GH17G077318 1.8 FANTOM5 ENCODE dbSUPER 10.1 +236.5 236523 10.3 HDGF PKNOX1 FOXA2 CREB3L1 ARNT WRNIP1 ARID4B SIN3A YBX1 YY1 SEPT9 MFSD11 MGAT5B ENSG00000200651 METTL23 SNHG20 ENSG00000267546 LOC105371907 ENSG00000266998
GH17G077095 2 FANTOM5 Ensembl ENCODE dbSUPER 5.8 +11.2 11240 5.8 HDGF FOXA2 PKNOX1 MLX ARNT ARID4B SIN3A DMAP1 YBX1 YY1 SEC14L1 RNU4-47P ENSG00000267078 SPHK1 ST6GALNAC2 MGAT5B JMJD6 SNHG20 GC17P077101 PIR37121
GH17G076612 0.9 ENCODE 10.1 -473.2 -473208 1.5 PKNOX1 ATF1 ARID4B DMAP1 RAD21 RFX5 ZNF121 SCRT2 CREM MIER1 MXRA7 MGAT5B SNHG20 ST6GALNAC2 GC17M076570 ST6GALNAC1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNHG20 on UCSC Golden Path with GeneCards custom track

Promoters for SNHG20 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000098664 357 1201 CREB3L1 MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF416 ZNF143 SP3 NFYC

Genomic Location for SNHG20 Gene

Chromosome:
17
Start:
77,086,716 bp from pter
End:
77,094,990 bp from pter
Size:
8,275 bases
Orientation:
Plus strand

Genomic View for SNHG20 Gene

Genes around SNHG20 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNHG20 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNHG20 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNHG20 Gene

Proteins for SNHG20 Gene

Post-translational modifications for SNHG20 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNHG20 Gene

Domains & Families for SNHG20 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNHG20 Gene

Function for SNHG20 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNHG20 Gene

Localization for SNHG20 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNHG20 Gene

Pathways & Interactions for SNHG20 Gene

SuperPathways for SNHG20 Gene

No Data Available

Interacting Proteins for SNHG20 Gene

Gene Ontology (GO) - Biological Process for SNHG20 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNHG20 Gene

Drugs & Compounds for SNHG20 Gene

No Compound Related Data Available

Transcripts for SNHG20 Gene

mRNA/cDNA for SNHG20 Gene

(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNHG20 Gene

No ASD Table

Relevant External Links for SNHG20 Gene

GeneLoc Exon Structure for
SNHG20
ECgene alternative splicing isoforms for
SNHG20

Expression for SNHG20 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNHG20 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNHG20 Gene:

SNHG20
genes like me logo Genes that share expression patterns with SNHG20: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNHG20 Gene

Orthologs for SNHG20 Gene

Evolution for SNHG20 Gene

ENSEMBL:
Gene Tree for SNHG20 (if available)
TreeFam:
Gene Tree for SNHG20 (if available)

No data available for Orthologs for SNHG20 Gene

Paralogs for SNHG20 Gene

No data available for Paralogs for SNHG20 Gene

Variants for SNHG20 Gene

Sequence variations from dbSNP and Humsavar for SNHG20 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1000421538 -- 77,091,488(+) ACTTT(C/T)TGCAA intron-variant
rs1000794025 -- 77,091,616(+) ACATG(C/T)GGCTA intron-variant
rs1000868006 -- 77,086,846(+) CACCC(A/G)GCTTC upstream-variant-2KB
rs1001907131 -- 77,087,470(+) GCCTG(C/G)CCTCA upstream-variant-2KB
rs1002464572 -- 77,093,424(+) ATAAA(G/T)AGATA intron-variant, nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for SNHG20 Gene

Variant ID Type Subtype PubMed ID
dgv5784n54 CNV gain 21841781
esv3554806 CNV deletion 23714750
esv3582914 CNV loss 25503493
esv3641304 CNV gain 21293372

Relevant External Links for SNHG20 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNHG20

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNHG20 Gene

Disorders for SNHG20 Gene

Relevant External Links for SNHG20

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNHG20

No disorders were found for SNHG20 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNHG20 Gene

Publications for SNHG20 Gene

  1. Long non-coding RNA SNHG20 predicts a poor prognosis for HCC and promotes cell invasion by regulating the epithelial-to-mesenchymal transition. (PMID: 28282787) Liu J. … Ni R. (Biomed. Pharmacother. 2017) 2 3 64
  2. A computational screen for mammalian pseudouridylation guide H/ACA RNAs. (PMID: 16373490) Schattner P. … Lowe T.M. (RNA 2006) 2 3 64
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64

Products for SNHG20 Gene

Sources for SNHG20 Gene

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