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Aliases for SNHG20 Gene

Subcategory (RNA class) for SNHG20 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SNHG20 Gene

  • Small Nucleolar RNA Host Gene 20 2 3 5
  • Small Nucleolar RNA Host Gene 20 (Non-Protein Coding) 2 3
  • Long Intergenic Non-Protein Coding RNA 338 2 3
  • Chromosome 17 Open Reading Frame 86 2
  • Non-Protein Coding RNA 338 2
  • SCARNA16HG 3
  • NCRNA00338 3
  • LINC00338 3
  • C17orf86 3

External Ids for SNHG20 Gene

Previous HGNC Symbols for SNHG20 Gene

  • C17orf86
  • NCRNA00338
  • LINC00338

Previous GeneCards Identifiers for SNHG20 Gene

  • GC17P075102

Summaries for SNHG20 Gene

GeneCards Summary for SNHG20 Gene

SNHG20 (Small Nucleolar RNA Host Gene 20) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNHG20 Gene

Genomics for SNHG20 Gene

Regulatory Elements for SNHG20 Gene

Enhancers for SNHG20 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17F077087 1.5 FANTOM5 ENCODE 9.3 +2.7 2748 3.2 PKNOX1 ARNT CREB3L1 MLX ZFP64 ARID4B SIN3A FEZF1 DMAP1 YY1 MIR6516 MGAT5B SNHG20 SCARNA16 PIR37121
GH17F077095 1.7 FANTOM5 Ensembl ENCODE 5.8 +11.2 11240 5.8 HDGF PKNOX1 ARNT MLX ARID4B SIN3A DMAP1 YBX1 YY1 SLC30A9 SEC14L1 HMGN2P43 RNU4-47P RPL7P49 ENSG00000267078 SPHK1 ST6GALNAC2 JMJD6 SNHG20 GC17P077101
GH17F077449 1.5 FANTOM5 ENCODE 4.6 +372.0 372036 19.5 MLX CREB3L1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC TBX21 SEPT9 MFSD11 SNHG20 SEC14L1 LOC105371903 ENSG00000279801
GH17F077083 1 ENCODE 5.7 -2.9 -2863 0.2 MLX ARID4B DMAP1 ZNF48 SP5 MXD4 TBX21 PPARG KAT8 NFIL3 SNHG20 MIR6516 SEC14L1 ENSG00000276202
GH17F077810 0.9 Ensembl ENCODE 5.1 +724.3 724327 1.5 HDGF ZNF687 ZNF133 TEAD4 ZKSCAN1 JUND ZNF354C POU5F1 ZNF207 KDM1A LINC01973 RNU1-80P TNRC6C SNHG20 GC17P077792 GC17P077836
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNHG20 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNHG20 Gene

Chromosome:
17
Start:
77,086,716 bp from pter
End:
77,094,990 bp from pter
Size:
8,275 bases
Orientation:
Plus strand

Genomic View for SNHG20 Gene

Genes around SNHG20 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNHG20 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNHG20 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNHG20 Gene

Proteins for SNHG20 Gene

Post-translational modifications for SNHG20 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNHG20 Gene

Domains & Families for SNHG20 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNHG20 Gene

Function for SNHG20 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNHG20 Gene

Localization for SNHG20 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNHG20 Gene

Pathways & Interactions for SNHG20 Gene

SuperPathways for SNHG20 Gene

No Data Available

Interacting Proteins for SNHG20 Gene

Gene Ontology (GO) - Biological Process for SNHG20 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNHG20 Gene

Transcripts for SNHG20 Gene

mRNA/cDNA for SNHG20 Gene

(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNHG20 Gene

No ASD Table

Relevant External Links for SNHG20 Gene

GeneLoc Exon Structure for
SNHG20
ECgene alternative splicing isoforms for
SNHG20

Expression for SNHG20 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNHG20 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNHG20 Gene:

SNHG20
genes like me logo Genes that share expression patterns with SNHG20: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNHG20 Gene

Orthologs for SNHG20 Gene

Evolution for SNHG20 Gene

ENSEMBL:
Gene Tree for SNHG20 (if available)
TreeFam:
Gene Tree for SNHG20 (if available)

No data available for Orthologs for SNHG20 Gene

Paralogs for SNHG20 Gene

No data available for Paralogs for SNHG20 Gene

Variants for SNHG20 Gene

Sequence variations from dbSNP and Humsavar for SNHG20 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs111389689 -- 77,087,506(+) CCTCC(A/G)CCTCC upstream-variant-2KB
rs111400172 -- 77,091,248(+) ATGCC(C/T)GGCTA intron-variant
rs111457444 -- 77,087,386(+) CAGGC(C/T)GGTCT upstream-variant-2KB
rs111754962 -- 77,090,035(+) CCGAG(-/A)AAAAA intron-variant
rs112659191 -- 77,087,191(+) TTTGA(A/G)ACGGA upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNHG20 Gene

Variant ID Type Subtype PubMed ID
esv3641304 CNV gain 21293372
esv3582914 CNV loss 25503493
esv3554806 CNV deletion 23714750
dgv5784n54 CNV gain 21841781

Relevant External Links for SNHG20 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNHG20

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNHG20 Gene

Disorders for SNHG20 Gene

Relevant External Links for SNHG20

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNHG20

No disorders were found for SNHG20 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNHG20 Gene

Publications for SNHG20 Gene

  1. A computational screen for mammalian pseudouridylation guide H/ACA RNAs. (PMID: 16373490) Schattner P. … Lowe T.M. (RNA 2006) 2 3 64
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64

Products for SNHG20 Gene

Sources for SNHG20 Gene

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