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Aliases for SNHG20 Gene

Subcategory (RNA class) for SNHG20 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SNHG20 Gene

  • Small Nucleolar RNA Host Gene 20 2 3 5
  • Small Nucleolar RNA Host Gene 20 (Non-Protein Coding) 2 3
  • Long Intergenic Non-Protein Coding RNA 338 2 3
  • Chromosome 17 Open Reading Frame 86 2
  • Non-Protein Coding RNA 338 2
  • SCARNA16HG 3
  • NCRNA00338 3
  • LINC00338 3
  • C17orf86 3

External Ids for SNHG20 Gene

Previous HGNC Symbols for SNHG20 Gene

  • C17orf86
  • NCRNA00338
  • LINC00338

Previous GeneCards Identifiers for SNHG20 Gene

  • GC17P075102

Summaries for SNHG20 Gene

GeneCards Summary for SNHG20 Gene

SNHG20 (Small Nucleolar RNA Host Gene 20) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SNHG20 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNHG20 Gene

Genomics for SNHG20 Gene

GeneHancer (GH) Regulatory Elements for SNHG20 Gene

Promoters and enhancers for SNHG20 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17I077085 Enhancer 1.3 Ensembl ENCODE dbSUPER 550.8 -0.2 -223 1.1 FOXA2 ARID4B ZNF2 ZNF143 RUNX3 DEK REST PPARG KAT8 NFIL3 SEC14L1 SNHG20 ENSG00000276202
GH17I077084 Enhancer 0.4 ENCODE dbSUPER 555.8 -1.9 -1862 0.2 SNHG20 SEC14L1 ENSG00000276202
GH17I076733 Promoter/Enhancer 3 UCNEbase EPDnew Ensembl ENCODE dbSUPER 20.2 -349.5 -349457 7.8 CLOCK ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 E2F8 ZNF143 ZNF548 SRSF2 MFSD11 MIR636 UNK ENSG00000267342 TRIM65 ENSG00000266980 SEPT9 ENSG00000267546 METTL23
GH17I077233 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 20.2 +148.1 148119 3.3 PKNOX1 ARNT SIN3A FEZF1 ZNF2 CBX5 ZNF213 ZNF302 E2F8 ZNF416 SRSF2 TNRC6C METTL23 ENSG00000267546 SEPT9 PRPSAP1 SNHG20 RNU4-47P ENSG00000267543 MFSD11
GH17I076258 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 11.9 -818.7 -818741 19.6 CLOCK DMAP1 IRF4 YY1 ZNF213 E2F8 ZNF143 SP3 NFYC ZC3H11A UBALD2 UNK ENSG00000267342 SRSF2 TRIM65 ENSG00000266980 ENSG00000267546 METTL23 MFSD11 EXOC7
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNHG20 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SNHG20 Gene

Genomic Locations for SNHG20 Gene
chr17:77,086,716-77,094,990
(GRCh38/hg38)
Size:
8,275 bases
Orientation:
Plus strand
chr17:75,082,798-75,091,068
(GRCh37/hg19)

Genomic View for SNHG20 Gene

Genes around SNHG20 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNHG20 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNHG20 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNHG20 Gene

Proteins for SNHG20 Gene

Post-translational modifications for SNHG20 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNHG20 Gene

Domains & Families for SNHG20 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNHG20 Gene

Function for SNHG20 Gene

Phenotypes From GWAS Catalog for SNHG20 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNHG20 Gene

Localization for SNHG20 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNHG20 Gene

Pathways & Interactions for SNHG20 Gene

SuperPathways for SNHG20 Gene

No Data Available

Interacting Proteins for SNHG20 Gene

Gene Ontology (GO) - Biological Process for SNHG20 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNHG20 Gene

Drugs & Compounds for SNHG20 Gene

No Compound Related Data Available

Transcripts for SNHG20 Gene

mRNA/cDNA for SNHG20 Gene

(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNHG20 Gene

No ASD Table

Relevant External Links for SNHG20 Gene

GeneLoc Exon Structure for
SNHG20
ECgene alternative splicing isoforms for
SNHG20

Expression for SNHG20 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNHG20 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNHG20 Gene:

SNHG20
genes like me logo Genes that share expression patterns with SNHG20: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNHG20 Gene

Orthologs for SNHG20 Gene

Evolution for SNHG20 Gene

ENSEMBL:
Gene Tree for SNHG20 (if available)
TreeFam:
Gene Tree for SNHG20 (if available)

No data available for Orthologs for SNHG20 Gene

Paralogs for SNHG20 Gene

No data available for Paralogs for SNHG20 Gene

Variants for SNHG20 Gene

Sequence variations from dbSNP and Humsavar for SNHG20 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs1000421538 -- 77,091,488(+) C/A/T intron_variant
rs1000794025 -- 77,091,616(+) T/C intron_variant
rs1000868006 -- 77,086,846(+) G/A upstream_transcript_variant
rs1001907131 -- 77,087,470(+) G/C upstream_transcript_variant
rs1002464572 -- 77,093,424(+) T/C/G non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNHG20 Gene

Variant ID Type Subtype PubMed ID
dgv5784n54 CNV gain 21841781
esv3554806 CNV deletion 23714750
esv3582914 CNV loss 25503493
esv3641304 CNV gain 21293372

Additional Variant Information for SNHG20 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNHG20

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNHG20 Gene

Disorders for SNHG20 Gene

Additional Disease Information for SNHG20

No disorders were found for SNHG20 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNHG20 Gene

Publications for SNHG20 Gene

  1. Long non-coding RNA SNHG20 predicts a poor prognosis for HCC and promotes cell invasion by regulating the epithelial-to-mesenchymal transition. (PMID: 28282787) Liu J … Ni R (Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie 2017) 2 3 58
  2. A computational screen for mammalian pseudouridylation guide H/ACA RNAs. (PMID: 16373490) Schattner P … Lowe TM (RNA (New York, N.Y.) 2006) 2 3 58
  3. Long non-coding RNA SNHG20 promotes non-small cell lung cancer cell proliferation and migration by epigenetically silencing of P21 expression. (PMID: 28981099) Chen Z … Wang Z (Cell death & disease 2017) 3 58
  4. Increased long noncoding RNA SNHG20 predicts poor prognosis in colorectal cancer. (PMID: 27543107) Li C … Xiong MM (BMC cancer 2016) 3 58
  5. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for SNHG20 Gene

Sources for SNHG20 Gene

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