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SNHG19 Gene(RNA Gene)

Small Nucleolar RNA Host Gene 19

GCID:
GC16M002154
GIFtS:
11
Genes Participants
UDN Logo

Aliases for SNHG19 Gene

Subcategory (RNA class) for SNHG19 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SNHG19 Gene

  • Small Nucleolar RNA Host Gene 19 2 3 5
  • Small Nucleolar RNA Host Gene 19 (Non-Protein Coding) 2 3
  • SNORD60HG 3

External Ids for SNHG19 Gene

Previous GeneCards Identifiers for SNHG19 Gene

  • GC16M002222

Summaries for SNHG19 Gene

GeneCards Summary for SNHG19 Gene

SNHG19 (Small Nucleolar RNA Host Gene 19) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNHG19 Gene

Genomics for SNHG19 Gene

Products:

  1. Regulatory Element

Regulatory Elements for SNHG19 Gene

Enhancers for SNHG19 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16F001308 1.2 ENCODE 68.4 +844.6 844621 5.2 CREB3L1 FEZF1 DMAP1 YY1 SLC30A9 ZNF416 ZNF143 ZNF548 MCM3 SP3 HN1L ENSG00000261505 ENSG00000260051 RHOT2 JMJD8 IFT140 ENSG00000260646 ENSG00000260954 SNHG19 LOC105371038
GH16F002147 1.8 FANTOM5 Ensembl ENCODE 25.2 -0.4 -416 17.4 MLX CREB3L1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF416 ZNF143 ZNF263 ENSG00000261505 HN1L ENSG00000260954 LOC105371055 ENSG00000260051 ENSG00000255513 TRAF7 SNORA64 ZNF598 ERVK13-1
GH16F003019 1.2 ENCODE 35.6 -866.9 -866928 5.2 CREB3L1 MLX DMAP1 YBX1 YY1 SLC30A9 ZNF416 ZNF143 SP3 NFYC ZNF263 ERVK13-1 SNHG19 ZNF597 BICDL2 SNORD60 CREBBP ENSG00000260447 ZNF205 ZNF174
GH16F002968 1.2 ENCODE 35 -814.4 -814371 3.4 HDGF MLX ZFP64 ARID4B SIN3A DMAP1 ZNF2 SLC30A9 ZNF143 ZNF416 ZNF263 ZNF597 SNHG19 SNORD60 ERVK13-1 CLUAP1 CREBBP LOC107984895 ZNF205 ZNF174
GH16F001258 1.2 Ensembl 34.8 +895.1 895097 3.5 MLX CREB3L1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF416 ZNF548 ENSG00000261505 ENSG00000260051 HN1L RHOT2 ENSG00000260954 SNORA64 ENSG00000255513 JMJD8 SNHG19 ENSG00000260646
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNHG19 on UCSC Golden Path with GeneCards custom track

Promoters for SNHG19 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000270155 375 3601 MLX CREB3L1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF416 ZNF143 SP3

Genomic Location for SNHG19 Gene

Chromosome:
16
Start:
2,154,797 bp from pter
End:
2,155,375 bp from pter
Size:
579 bases
Orientation:
Minus strand

Genomic View for SNHG19 Gene

Genes around SNHG19 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNHG19 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNHG19 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for SNHG19 Gene

Proteins for SNHG19 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for SNHG19 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNHG19 Gene

Domains & Families for SNHG19 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNHG19 Gene

Function for SNHG19 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Animal Model Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNHG19 Gene

Localization for SNHG19 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNHG19 Gene

Pathways & Interactions for SNHG19 Gene

SuperPathways for SNHG19 Gene

PathCards logo More details on SuperPathways for SNHG19
No Data Available

Interacting Proteins for SNHG19 Gene

Gene Ontology (GO) - Biological Process for SNHG19 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNHG19 Gene

Drugs & Compounds for SNHG19 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for SNHG19 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for SNHG19 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNHG19 Gene

No ASD Table

Relevant External Links for SNHG19 Gene

GeneLoc Exon Structure for
SNHG19
ECgene alternative splicing isoforms for
SNHG19

Expression for SNHG19 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNHG19 Gene

mRNA expression in normal human tissues for SNHG19 Gene
mRNA expression by GTEx for SNHG19 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNHG19 Gene:

SNHG19
genes like me logo Genes that share expression patterns with SNHG19: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNHG19 Gene

Orthologs for SNHG19 Gene

Evolution for SNHG19 Gene

ENSEMBL:
Gene Tree for SNHG19 (if available)
TreeFam:
Gene Tree for SNHG19 (if available)

No data available for Orthologs for SNHG19 Gene

Paralogs for SNHG19 Gene

No data available for Paralogs for SNHG19 Gene

Variants for SNHG19 Gene

Sequence variations from dbSNP and Humsavar for SNHG19 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs11408007 -- 2,154,642(+) AAAAA(-/A/AA)TCACG downstream-variant-500B, upstream-variant-2KB
rs115018781 -- 2,157,248(+) CATAG(A/T)TCTCT intron-variant, upstream-variant-2KB
rs115038582 -- 2,156,019(+) GGGTC(A/G)GGGTC intron-variant, upstream-variant-2KB
rs12927855 -- 2,156,000(+) gctga(A/G)acggt intron-variant, upstream-variant-2KB
rs13242 -- 2,154,834(-) ATTGA(A/G)GTGCT nc-transcript-variant, downstream-variant-500B, upstream-variant-2KB

Relevant External Links for SNHG19 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNHG19

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNHG19 Gene

Disorders for SNHG19 Gene

Relevant External Links for SNHG19

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNHG19

No disorders were found for SNHG19 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNHG19 Gene

Publications for SNHG19 Gene

No publications were found for SNHG19 Gene.

Products for SNHG19 Gene

Sources for SNHG19 Gene

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