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SNHG19 Gene(RNA Gene)

Small Nucleolar RNA Host Gene 19

GCID:
GC16M002154
GIFtS:
15
Genes Participants
UDN Logo

Aliases for SNHG19 Gene

Subcategory (RNA class) for SNHG19 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SNHG19 Gene

  • Small Nucleolar RNA Host Gene 19 2 3 5
  • Small Nucleolar RNA Host Gene 19 (Non-Protein Coding) 2 3
  • SNORD60HG 3

External Ids for SNHG19 Gene

Previous GeneCards Identifiers for SNHG19 Gene

  • GC16M002222

Summaries for SNHG19 Gene

GeneCards Summary for SNHG19 Gene

SNHG19 (Small Nucleolar RNA Host Gene 19) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNHG19 Gene

Genomics for SNHG19 Gene

Products:

  1. Regulatory Element

Regulatory Elements for SNHG19 Gene

Enhancers for SNHG19 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16G003097 2 FANTOM5 Ensembl ENCODE dbSUPER 21.3 -944.7 -944726 6.2 CREB3L1 MLX ZFP64 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC TBX21 ZNF205 ZNF263 SNHG19 SNORD60 ZNF213-AS1 THOC6 ZNF597 ERVK13-1 LOC105371055 CREBBP
GH16G001308 1.4 ENCODE dbSUPER 29.3 +844.6 844621 5.2 CREB3L1 FEZF1 DMAP1 YY1 SLC30A9 ZNF416 ZNF143 ZNF548 SP3 MCM3 JPT2 ENSG00000261505 ENSG00000260051 RHOT2 JMJD8 ENSG00000260646 ENSG00000260954 SNORA64 ENSG00000255513 NME3
GH16G002968 1.4 ENCODE dbSUPER 21.4 -814.4 -814371 3.4 MLX AGO1 ZFP64 DMAP1 SLC30A9 ZNF143 ZNF416 ZNF263 SP3 NFYC ZNF597 ZNF263 LOC107984895 SNHG19 SNORD60 ZNF174 TRAF7 ZNF598 ENSG00000270168 CREBBP
GH16G001271 1.1 ENCODE 26.3 +883.5 883549 1.6 PKNOX1 SIN3A FEZF1 ZNF2 ZNF302 ZNF416 SP3 REST ZNF662 ZNF592 JPT2 ENSG00000261505 RHOT2 IFT140 ENSG00000260646 ENSG00000260051 LOC105371038 ENSG00000262528 JMJD8 ENSG00000260954
GH16G001928 1.8 FANTOM5 Ensembl ENCODE dbSUPER 12.2 +225.7 225652 1.8 ARNT CREB3L1 AGO1 ARID4B SIN3A DMAP1 ZNF2 ZNF766 ZNF207 ZNF143 IFT140 CCDC154 ERVK13-1 FAHD1 EME2 NME3 JPT2 ENSG00000260447 SNHG19 HAGH
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNHG19 on UCSC Golden Path with GeneCards custom track

Promoters for SNHG19 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000279436 275 3401 CREB3L1 MLX AGO1 ZFP64 YBX1 FEZF1 DMAP1 YY1 SLC30A9 ZNF416

Genomic Location for SNHG19 Gene

Chromosome:
16
Start:
2,154,797 bp from pter
End:
2,155,375 bp from pter
Size:
579 bases
Orientation:
Minus strand

Genomic View for SNHG19 Gene

Genes around SNHG19 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNHG19 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNHG19 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for SNHG19 Gene

Proteins for SNHG19 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for SNHG19 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNHG19 Gene

Domains & Families for SNHG19 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNHG19 Gene

Function for SNHG19 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNHG19 Gene

Localization for SNHG19 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNHG19 Gene

Pathways & Interactions for SNHG19 Gene

SuperPathways for SNHG19 Gene

PathCards logo More details on SuperPathways for SNHG19
No Data Available

Interacting Proteins for SNHG19 Gene

Gene Ontology (GO) - Biological Process for SNHG19 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNHG19 Gene

Drugs & Compounds for SNHG19 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for SNHG19 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for SNHG19 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNHG19 Gene

No ASD Table

Relevant External Links for SNHG19 Gene

GeneLoc Exon Structure for
SNHG19
ECgene alternative splicing isoforms for
SNHG19

Expression for SNHG19 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNHG19 Gene

mRNA expression in normal human tissues for SNHG19 Gene
mRNA expression by GTEx for SNHG19 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNHG19 Gene:

SNHG19
genes like me logo Genes that share expression patterns with SNHG19: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNHG19 Gene

Orthologs for SNHG19 Gene

Evolution for SNHG19 Gene

ENSEMBL:
Gene Tree for SNHG19 (if available)
TreeFam:
Gene Tree for SNHG19 (if available)

No data available for Orthologs for SNHG19 Gene

Paralogs for SNHG19 Gene

No data available for Paralogs for SNHG19 Gene

Variants for SNHG19 Gene

Sequence variations from dbSNP and Humsavar for SNHG19 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs1000505285 -- 2,155,626(+) GTGAT(C/T)CTGAA upstream-variant-2KB
rs1000598022 -- 2,155,808(+) AGGGG(G/T)CATCA nc-transcript-variant, upstream-variant-2KB, utr-variant-5-prime
rs1001589685 -- 2,154,707(+) CCGTT(C/T)TCATG downstream-variant-500B, upstream-variant-2KB
rs1002041677 -- 2,156,431(+) AGACA(A/G)GGTGG intron-variant, upstream-variant-2KB
rs1002143455 -- 2,156,619(+) AAAGA(A/G)CCAGA intron-variant, upstream-variant-2KB

Relevant External Links for SNHG19 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNHG19

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNHG19 Gene

Disorders for SNHG19 Gene

Relevant External Links for SNHG19

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNHG19

No disorders were found for SNHG19 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNHG19 Gene

Publications for SNHG19 Gene

No publications were found for SNHG19 Gene.

Products for SNHG19 Gene

Sources for SNHG19 Gene

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