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Aliases for SNHG18 Gene

Subcategory (RNA class) for SNHG18 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SNHG18 Gene

  • Small Nucleolar RNA Host Gene 18 2 3 5
  • Small Nucleolar RNA Host Gene 18 (Non-Protein Coding) 2 3
  • CTD-2001E22.2 3

External Ids for SNHG18 Gene

Previous GeneCards Identifiers for SNHG18 Gene

  • GC05P009552
  • GC05P009554
  • GC05P009555
  • GC05P009556
  • GC05P009557
  • GC05P009558

Summaries for SNHG18 Gene

GeneCards Summary for SNHG18 Gene

SNHG18 (Small Nucleolar RNA Host Gene 18) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNHG18 Gene

Genomics for SNHG18 Gene

Regulatory Elements for SNHG18 Gene

Enhancers for SNHG18 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05F009542 1.3 FANTOM5 ENCODE 34 -0.4 -445 5.6 TBL1XR1 SIN3A ZNF2 RAD21 RFX5 EGR1 SCRT2 ZNF143 EGR2 ZNF654 SNHG18 ENSG00000248537 SEMA5A ENSG00000250001
GH05F009552 0.2 ENCODE 32.8 +7.6 7621 1.8 SNHG18 SNORD123 LOC101929359
GH05F009540 0.7 Ensembl 19.3 -5.5 -5500 0.2 SNHG18 SEMA5A ENSG00000250001
GH05F009483 1.2 Ensembl ENCODE 15.8 -62.4 -62418 1.5 SNHG18 SEMA5A SNORD123 ENSG00000272417 ENSG00000279698 GC05P009389
GH05F010248 0.2 ENCODE 14.6 +704.2 704161 4.1 HDGF PKNOX1 ARNT MLX CREB3L1 WRNIP1 ZFP64 ARID4B SIN3A DMAP1 ROPN1L-AS1 CCT5 LOC105374648 CTD-2154B17.1 ENSG00000250001 ENSG00000248525 SNHG18 MARCH6 CMBL ROPN1L
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SNHG18 on UCSC Golden Path with GeneCards custom track

Promoters for SNHG18 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001407366 -300 5001 TBL1XR1 SIN3A ZNF2 RAD21 RFX5 EGR1 SCRT2 ZNF143 EGR2 ZNF654

Genomic Location for SNHG18 Gene

Chromosome:
5
Start:
9,546,200 bp from pter
End:
9,550,609 bp from pter
Size:
4,410 bases
Orientation:
Plus strand

Genomic View for SNHG18 Gene

Genes around SNHG18 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNHG18 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNHG18 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNHG18 Gene

Proteins for SNHG18 Gene

Post-translational modifications for SNHG18 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNHG18 Gene

Domains & Families for SNHG18 Gene

Gene Families for SNHG18 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNHG18: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNHG18 Gene

Function for SNHG18 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNHG18 Gene

Localization for SNHG18 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNHG18 Gene

Pathways & Interactions for SNHG18 Gene

SuperPathways for SNHG18 Gene

No Data Available

Interacting Proteins for SNHG18 Gene

Gene Ontology (GO) - Biological Process for SNHG18 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNHG18 Gene

Transcripts for SNHG18 Gene

mRNA/cDNA for SNHG18 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNHG18 Gene

No ASD Table

Relevant External Links for SNHG18 Gene

GeneLoc Exon Structure for
SNHG18
ECgene alternative splicing isoforms for
SNHG18

Expression for SNHG18 Gene

mRNA expression in normal human tissues for SNHG18 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNHG18 Gene:

SNHG18
genes like me logo Genes that share expression patterns with SNHG18: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNHG18 Gene

Orthologs for SNHG18 Gene

Evolution for SNHG18 Gene

ENSEMBL:
Gene Tree for SNHG18 (if available)
TreeFam:
Gene Tree for SNHG18 (if available)

No data available for Orthologs for SNHG18 Gene

Paralogs for SNHG18 Gene

No data available for Paralogs for SNHG18 Gene

Variants for SNHG18 Gene

Sequence variations from dbSNP and Humsavar for SNHG18 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs10462868 -- 9,550,474(+) ACAGA(C/T)AGCTT downstream-variant-500B
rs112409995 -- 9,544,436(+) ATTTA(C/T)GTCTG intron-variant, upstream-variant-2KB
rs112536265 -- 9,546,195(+) GCCGC(A/C/G)CCGCC upstream-variant-2KB
rs112941079 -- 9,545,986(+) GCCTG(A/G)GGCTG upstream-variant-2KB, utr-variant-5-prime
rs113068727 -- 9,547,466(+) CAATG(C/G)AAATA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNHG18 Gene

Variant ID Type Subtype PubMed ID
dgv5565n100 CNV gain 25217958
dgv9572n54 CNV gain 21841781
dgv9573n54 CNV gain+loss 21841781
esv22711 CNV loss 19812545
nsv1032672 CNV gain 25217958
nsv597071 CNV gain 21841781
nsv597073 CNV loss 21841781
nsv597081 CNV gain 21841781
nsv597082 CNV loss 21841781
nsv597083 CNV loss 21841781

Relevant External Links for SNHG18 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNHG18

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNHG18 Gene

Disorders for SNHG18 Gene

Relevant External Links for SNHG18

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNHG18

No disorders were found for SNHG18 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNHG18 Gene

Publications for SNHG18 Gene

  1. Upregulation of Long Noncoding RNA Small Nucleolar RNA Host Gene 18 Promotes Radioresistance of Glioma by Repressing Semaphorin 5A. (PMID: 27788958) Zheng R. … Yuan Y. (Int. J. Radiat. Oncol. Biol. Phys. 2016) 2 3 64
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  3. Transcriptome analysis of human gastric cancer. (PMID: 16341674) Oh J.H. … Kim N.S. (Mamm. Genome 2005) 3 64
  4. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3 64

Products for SNHG18 Gene

Sources for SNHG18 Gene

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