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Aliases for SNHG18 Gene

Subcategory (RNA class) for SNHG18 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SNHG18 Gene

  • Small Nucleolar RNA Host Gene 18 2 3 5
  • Small Nucleolar RNA Host Gene 18 (Non-Protein Coding) 2 3
  • CTD-2001E22.2 3

External Ids for SNHG18 Gene

Previous GeneCards Identifiers for SNHG18 Gene

  • GC05P009552
  • GC05P009554
  • GC05P009555
  • GC05P009556

Summaries for SNHG18 Gene

GeneCards Summary for SNHG18 Gene

SNHG18 (Small Nucleolar RNA Host Gene 18) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNHG18 Gene

Genomics for SNHG18 Gene

Regulatory Elements for SNHG18 Gene

Enhancers for SNHG18 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around SNHG18 on UCSC Golden Path with GeneCards custom track

Promoters for SNHG18 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around SNHG18 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNHG18 Gene

Chromosome:
5
Start:
9,546,200 bp from pter
End:
9,550,609 bp from pter
Size:
4,410 bases
Orientation:
Plus strand

Genomic View for SNHG18 Gene

Genes around SNHG18 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNHG18 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNHG18 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNHG18 Gene

Proteins for SNHG18 Gene

Post-translational modifications for SNHG18 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNHG18 Gene

Domains & Families for SNHG18 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNHG18 Gene

Function for SNHG18 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNHG18 Gene

Localization for SNHG18 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNHG18 Gene

Pathways & Interactions for SNHG18 Gene

SuperPathways for SNHG18 Gene

No Data Available

Interacting Proteins for SNHG18 Gene

Gene Ontology (GO) - Biological Process for SNHG18 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNHG18 Gene

Drugs & Compounds for SNHG18 Gene

No Compound Related Data Available

Transcripts for SNHG18 Gene

mRNA/cDNA for SNHG18 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SNHG18 Gene

No ASD Table

Relevant External Links for SNHG18 Gene

GeneLoc Exon Structure for
SNHG18
ECgene alternative splicing isoforms for
SNHG18

Expression for SNHG18 Gene

mRNA expression in normal human tissues for SNHG18 Gene

genes like me logo Genes that share expression patterns with SNHG18: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for SNHG18 Gene

Orthologs for SNHG18 Gene

Evolution for SNHG18 Gene

ENSEMBL:
Gene Tree for SNHG18 (if available)
TreeFam:
Gene Tree for SNHG18 (if available)

No data available for Orthologs for SNHG18 Gene

Paralogs for SNHG18 Gene

No data available for Paralogs for SNHG18 Gene

Variants for SNHG18 Gene

Sequence variations from dbSNP and Humsavar for SNHG18 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs1334 -- 9,550,221(+) TTTCA(A/G)TACGG nc-transcript-variant
rs930076 -- 9,550,530(-) ACTCA(A/G)TGTCG downstream-variant-500B
rs7714356 -- 9,550,591(+) AAAAA(G/T)ATATG downstream-variant-500B
rs414396 -- 9,550,596(+) GATAT(A/G)TTTTA downstream-variant-500B
rs10462868 -- 9,550,474(+) ACAGA(C/T)AGCTT downstream-variant-500B

Relevant External Links for SNHG18 Gene

HapMap Linkage Disequilibrium report
SNHG18

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNHG18 Gene

Disorders for SNHG18 Gene

Relevant External Links for SNHG18

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNHG18

No disorders were found for SNHG18 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNHG18 Gene

Publications for SNHG18 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 67
  2. Transcriptome analysis of human gastric cancer. (PMID: 16341674) Oh J.H. … Kim N.S. (Mamm. Genome 2005) 3
  3. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3

Products for SNHG18 Gene

Sources for SNHG18 Gene

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