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Aliases for SNHG17 Gene

Subcategory (RNA class) for SNHG17 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SNHG17 Gene

  • Small Nucleolar RNA Host Gene 17 2 3 5
  • Small Nucleolar RNA Host Gene 17 (Non-Protein Coding) 2

External Ids for SNHG17 Gene

Previous GeneCards Identifiers for SNHG17 Gene

  • GC20M037076
  • GC20M037088

Summaries for SNHG17 Gene

GeneCards Summary for SNHG17 Gene

SNHG17 (Small Nucleolar RNA Host Gene 17) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNHG17 Gene

Genomics for SNHG17 Gene

Regulatory Elements for SNHG17 Gene

Enhancers for SNHG17 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20F038433 1.2 ENCODE 116.8 +0.6 557 2.9 CREB3L1 MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC SNHG17 ENSG00000224635 ACTR5 TTI1 RPRD1B ENSG00000201811 LINC00489 LINC01734 SNORA71A RN7SKP173
GH20F038425 0.7 ENCODE 87 +8.4 8422 2.6 ZNF146 INSM2 PLRG1 ZIC2 ZEB1 GLIS2 POLR2A ZNF391 FOS ZNF600 SNHG17 GC20M038435 SNORA71B
GH20F038195 1.4 FANTOM5 Ensembl ENCODE 47.4 +236.6 236630 7.5 CREB3L1 ZFP64 ZNF48 FOS DEK ZNF202 REST ZNF518A ZNF623 ZNF264 ACTR5 SNHG17 TTI1 RN7SKP173 SNORA71C SNORA71A RPS3P2 MANBAL RPRD1B ENSG00000224635
GH20F038139 1.7 FANTOM5 Ensembl ENCODE 47.2 +278.7 278714 34.9 MLX CREB3L1 ZFP64 YBX1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 MCM3 ACTR5 TTI1 SNHG17 RN7SKP173 SNORA71C SNORA71A ENSG00000224635 RPRD1B MANBAL TGM2
GH20F038446 0.4 ENCODE 43.1 -12.1 -12085 2.8 HDGF PKNOX1 CREB3L1 MLX ZFP64 ARID4B SIN3A DMAP1 YY1 SLC30A9 SNHG17 ENSG00000224635 ACTR5 TTI1 GC20P038458 SNHG11
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SNHG17 on UCSC Golden Path with GeneCards custom track

Promoters for SNHG17 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001448759 475 1801 CREB3L1 MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC

Genomic Location for SNHG17 Gene

Chromosome:
20
Start:
38,420,588 bp from pter
End:
38,435,375 bp from pter
Size:
14,788 bases
Orientation:
Minus strand

Genomic View for SNHG17 Gene

Genes around SNHG17 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNHG17 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNHG17 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNHG17 Gene

Proteins for SNHG17 Gene

Post-translational modifications for SNHG17 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNHG17 Gene

Domains & Families for SNHG17 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNHG17 Gene

Function for SNHG17 Gene

Phenotypes for SNHG17 Gene

GenomeRNAi human phenotypes for SNHG17:
genes like me logo Genes that share phenotypes with SNHG17: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNHG17 Gene

Localization for SNHG17 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNHG17 Gene

Pathways & Interactions for SNHG17 Gene

SuperPathways for SNHG17 Gene

No Data Available

Interacting Proteins for SNHG17 Gene

Gene Ontology (GO) - Biological Process for SNHG17 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNHG17 Gene

Transcripts for SNHG17 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for SNHG17 Gene

ExUns: 1a · 1b · 1c · 1d · 1e · 1f · 1g ^ 2 ^ 3a · 3b ^ 4a · 4b ^ 5 ^ 6 ^ 7a · 7b · 7c ^ 8a · 8b ^ 9a · 9b · 9c · 9d · 9e ^ 10 ^ 11a ·
SP1: - - - - - - - - - - -
SP2: - - - - - - - - - - - - -
SP3: - - - - -
SP4: - - - - - - - - - - - - -
SP5: - - - - - - -
SP6: - - - - - - - - - - -
SP7: - - - - - - - -
SP8: - - - - - - - - -
SP9: - - - - - -
SP10: - - - - - - - -
SP11: - - - - -
SP12: - - - - - -
SP13: - - - - - - - -
SP14:
SP15:
SP16: -
SP17: - - - - - - - - -
SP18: - -

ExUns: 11b · 11c · 11d · 11e
SP1:
SP2:
SP3:
SP4:
SP5:
SP6:
SP7:
SP8:
SP9:
SP10:
SP11:
SP12:
SP13:
SP14:
SP15:
SP16:
SP17:
SP18:

Relevant External Links for SNHG17 Gene

GeneLoc Exon Structure for
SNHG17
ECgene alternative splicing isoforms for
SNHG17

Expression for SNHG17 Gene

mRNA expression in normal human tissues for SNHG17 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNHG17 Gene:

SNHG17
genes like me logo Genes that share expression patterns with SNHG17: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNHG17 Gene

Orthologs for SNHG17 Gene

Evolution for SNHG17 Gene

ENSEMBL:
Gene Tree for SNHG17 (if available)
TreeFam:
Gene Tree for SNHG17 (if available)

No data available for Orthologs for SNHG17 Gene

Paralogs for SNHG17 Gene

No data available for Paralogs for SNHG17 Gene

Variants for SNHG17 Gene

Sequence variations from dbSNP and Humsavar for SNHG17 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs111597668 -- 38,425,527(+) GAGAC(C/T)ATGTT intron-variant, upstream-variant-2KB
rs112142997 -- 38,420,725(+) TCCAC(A/G)GTCCT nc-transcript-variant
rs112466574 -- 38,424,030(+) AGCTG(C/G)GCGTG intron-variant
rs113102500 -- 38,428,361(+) CCTCA(A/C)CTCTC intron-variant, upstream-variant-2KB
rs113132567 -- 38,432,422(+) ATGGC(A/C/T)CATCT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SNHG17 Gene

Variant ID Type Subtype PubMed ID
dgv699n67 CNV loss 20364138
dgv7570n54 CNV loss 21841781
dgv785e199 CNV deletion 23128226
esv25499 CNV loss 19812545
esv2722397 CNV deletion 23290073
esv2758794 CNV gain 17122850
esv35121 CNV gain 17911159
esv3557052 CNV deletion 23714750
esv3645784 CNV loss 21293372
esv6859 CNV loss 19470904
nsv1058457 CNV loss 25217958
nsv1063495 CNV gain 25217958
nsv509769 CNV insertion 20534489
nsv817893 CNV gain 17921354
nsv828722 CNV loss 20364138
nsv9809 CNV loss 18304495

Relevant External Links for SNHG17 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNHG17

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNHG17 Gene

Disorders for SNHG17 Gene

Relevant External Links for SNHG17

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNHG17

No disorders were found for SNHG17 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNHG17 Gene

Publications for SNHG17 Gene

  1. Comprehensive characterization of cancer subtype associated long non-coding RNAs and their clinical implications. (PMID: 25307233) Zhao W. … Jiao S. (Sci Rep 2014) 3 64
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  3. Transcriptome analysis of human gastric cancer. (PMID: 16341674) Oh J.H. … Kim N.S. (Mamm. Genome 2005) 3 64
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for SNHG17 Gene

Sources for SNHG17 Gene

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