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Aliases for SNHG17 Gene

Subcategory (RNA class) for SNHG17 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SNHG17 Gene

  • Small Nucleolar RNA Host Gene 17 2 3
  • Small Nucleolar RNA Host Gene 17 (Non-Protein Coding) 2

External Ids for SNHG17 Gene

Previous GeneCards Identifiers for SNHG17 Gene

  • GC20M037076
  • GC20M037088

Summaries for SNHG17 Gene

GeneCards Summary for SNHG17 Gene

SNHG17 (Small Nucleolar RNA Host Gene 17) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNHG17 Gene

Genomics for SNHG17 Gene

Genomic Location for SNHG17 Gene

Chromosome:
20
Start:
38,420,588 bp from pter
End:
38,435,375 bp from pter
Size:
14,788 bases
Orientation:
Minus strand

Genomic View for SNHG17 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNHG17 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNHG17 Gene

No data available for Regulatory Elements for SNHG17 Gene

Proteins for SNHG17 Gene

Post-translational modifications for SNHG17 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNHG17 Gene

Domains & Families for SNHG17 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNHG17 Gene

Function for SNHG17 Gene

Phenotypes for SNHG17 Gene

genes like me logo Genes that share phenotypes with SNHG17: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNHG17 Gene

Localization for SNHG17 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNHG17 Gene

Pathways & Interactions for SNHG17 Gene

SuperPathways for SNHG17 Gene

No Data Available

Interacting Proteins for SNHG17 Gene

Gene Ontology (GO) - Biological Process for SNHG17 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNHG17 Gene

Drugs & Compounds for SNHG17 Gene

No Compound Related Data Available

Transcripts for SNHG17 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for SNHG17 Gene

ExUns: 1a · 1b · 1c · 1d · 1e · 1f · 1g ^ 2 ^ 3a · 3b ^ 4a · 4b ^ 5 ^ 6 ^ 7a · 7b · 7c ^ 8a · 8b ^ 9a · 9b · 9c · 9d · 9e ^ 10 ^ 11a ·
SP1: - - - - - - - - - - -
SP2: - - - - - - - - - - - - -
SP3: - - - - -
SP4: - - - - - - - - - - - - -
SP5: - - - - - - -
SP6: - - - - - - - - - - -
SP7: - - - - - - - -
SP8: - - - - - - - - -
SP9: - - - - - -
SP10: - - - - - - - -
SP11: - - - - -
SP12: - - - - - -
SP13: - - - - - - - -
SP14:
SP15:
SP16: -
SP17: - - - - - - - - -
SP18: - -

ExUns: 11b · 11c · 11d · 11e
SP1:
SP2:
SP3:
SP4:
SP5:
SP6:
SP7:
SP8:
SP9:
SP10:
SP11:
SP12:
SP13:
SP14:
SP15:
SP16:
SP17:
SP18:

Relevant External Links for SNHG17 Gene

GeneLoc Exon Structure for
SNHG17
ECgene alternative splicing isoforms for
SNHG17

Expression for SNHG17 Gene

mRNA expression in normal human tissues for SNHG17 Gene

genes like me logo Genes that share expression patterns with SNHG17: view

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for SNHG17 Gene

Orthologs for SNHG17 Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for SNHG17 Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
Mammalia 9430008C03Rik 16
Species with no ortholog for SNHG17:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNHG17 Gene

ENSEMBL:
Gene Tree for SNHG17 (if available)
TreeFam:
Gene Tree for SNHG17 (if available)

Paralogs for SNHG17 Gene

No data available for Paralogs for SNHG17 Gene

Variants for SNHG17 Gene

Sequence variations from dbSNP and Humsavar for SNHG17 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type MAF
rs788347 -- 38,433,940(+) TTTCT(C/T)TCCCT intron-variant
rs788348 -- 38,434,831(+) GACTG(A/G)CACTT intron-variant
rs788349 -- 38,434,992(+) TGGCC(C/G)GCTCA intron-variant
rs788350 -- 38,435,993(+) AGACT(A/G)TAGAC upstream-variant-2KB
rs1315306 -- 38,436,101(+) GCAGG(A/G)TGTGC upstream-variant-2KB

Relevant External Links for SNHG17 Gene

HapMap Linkage Disequilibrium report
SNHG17

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNHG17 Gene

Disorders for SNHG17 Gene

Relevant External Links for SNHG17

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNHG17
genes like me logo Genes that share disorders with SNHG17: view

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNHG17 Gene

Publications for SNHG17 Gene

  1. Comprehensive characterization of cancer subtype associated long non-coding RNAs and their clinical implications. (PMID: 25307233) Zhao W. … Jiao S. (Sci Rep 2014) 67
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 67
  3. Transcriptome analysis of human gastric cancer. (PMID: 16341674) Oh J.H. … Kim N.S. (Mamm. Genome 2005) 67
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 67
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 67

Products for SNHG17 Gene

Sources for SNHG17 Gene

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