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Aliases for SNHG16 Gene

Subcategory (RNA class) for SNHG16 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for SNHG16 Gene

  • Small Nucleolar RNA Host Gene 16 2 3 5
  • Small Nucleolar RNA Host Gene 16 (Non-Protein Coding) 2 3
  • Non-Coding RNA Expressed In Aggressive Neuroblastoma 2 3
  • Nbla10727 3
  • Nbla12061 3
  • NcRAN 3

External Ids for SNHG16 Gene

Previous GeneCards Identifiers for SNHG16 Gene

  • GC17P074570
  • GC17P074578
  • GC17P074592
  • GC17P074604

Summaries for SNHG16 Gene

GeneCards Summary for SNHG16 Gene

SNHG16 (Small Nucleolar RNA Host Gene 16) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with SNHG16 include Neuroblastoma.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNHG16 Gene

Genomics for SNHG16 Gene

Regulatory Elements for SNHG16 Gene

Enhancers for SNHG16 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17G076555 1.4 Ensembl ENCODE 33 +1.7 1695 8.1 CREB3L1 ZFP64 FEZF1 DMAP1 YY1 ZNF143 SP3 NFYC ZNF610 GLIS1 ENSG00000267543 SNHG16 H3F3B UNK METTL23 ENSG00000267546 GC17P076605 SNORD1C
GH17G076505 1.5 Ensembl ENCODE dbSUPER 12.2 -51.3 -51324 1.1 HDGF ATF1 MLX CREB3L1 ZFP64 ARID4B SIN3A DMAP1 ZNF48 GLIS2 SNHG16 SNORD1B UBE2O AANAT PRCD CYGB SPHK1 PRPSAP1 FBF1 RHBDF2
GH17G076599 1.3 Ensembl ENCODE 11.9 +43.7 43699 3.7 PKNOX1 ATF1 ARNT ZNF766 ELK1 GATA2 FOS KLF13 ZNF263 CAVIN1 METTL23 ENSG00000267342 RNU6-227P ENSG00000267546 H3F3B ST6GALNAC2 SNORD1B UNK SNHG16 PRCD
GH17G076542 1.6 Ensembl ENCODE dbSUPER 8.8 -12.7 -12699 5.9 HDGF PKNOX1 FOXA2 ARNT ARID4B SIN3A YBX1 ZNF2 ZNF207 ZNF143 ENSG00000267543 ENSG00000267342 UNK ENSG00000267546 TRIM65 ENSG00000266980 PRCD ENSG00000272386 ENSG00000267078 ST6GALNAC2
GH17G076540 1.3 ENCODE dbSUPER 9 -16.7 -16682 1.5 HDGF ATF1 SIN3A ZNF2 GLIS2 FOS ZNF263 SP3 NFYC REST ENSG00000267543 SNHG16 GC17P076540
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNHG16 on UCSC Golden Path with GeneCards custom track

Promoters for SNHG16 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000098599 136 2201 HDGF PKNOX1 MLX CREB3L1 WRNIP1 ARID4B SIN3A FEZF1 DMAP1 ZNF2

Genomic Location for SNHG16 Gene

Chromosome:
17
Start:
76,557,764 bp from pter
End:
76,565,348 bp from pter
Size:
7,585 bases
Orientation:
Plus strand

Genomic View for SNHG16 Gene

Genes around SNHG16 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNHG16 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNHG16 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNHG16 Gene

Proteins for SNHG16 Gene

Post-translational modifications for SNHG16 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNHG16 Gene

Domains & Families for SNHG16 Gene

Gene Families for SNHG16 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNHG16: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNHG16 Gene

Function for SNHG16 Gene

Animal Model Products

miRNA for SNHG16 Gene

miRTarBase miRNAs that target SNHG16

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for SNHG16 Gene

Localization for SNHG16 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SNHG16 gene
Compartment Confidence
extracellular 3
nucleus 1
cytosol 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for SNHG16 Gene

Pathways & Interactions for SNHG16 Gene

SuperPathways for SNHG16 Gene

No Data Available

Interacting Proteins for SNHG16 Gene

Gene Ontology (GO) - Biological Process for SNHG16 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNHG16 Gene

Drugs & Compounds for SNHG16 Gene

No Compound Related Data Available

Transcripts for SNHG16 Gene

mRNA/cDNA for SNHG16 Gene

(18) Additional mRNA sequences :
(8) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNHG16 Gene

Small nucleolar RNA host gene 16 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SNHG16 Gene

No ASD Table

Relevant External Links for SNHG16 Gene

GeneLoc Exon Structure for
SNHG16
ECgene alternative splicing isoforms for
SNHG16

Expression for SNHG16 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNHG16 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNHG16 Gene:

SNHG16

SOURCE GeneReport for Unigene cluster for SNHG16 Gene:

Hs.288215

Evidence on tissue expression from TISSUES for SNHG16 Gene

  • Nervous system(3.8)
  • Skin(3.7)
  • Eye(2.8)
  • Lung(2.8)
  • Liver(2)
genes like me logo Genes that share expression patterns with SNHG16: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNHG16 Gene

Orthologs for SNHG16 Gene

Evolution for SNHG16 Gene

ENSEMBL:
Gene Tree for SNHG16 (if available)
TreeFam:
Gene Tree for SNHG16 (if available)

No data available for Orthologs for SNHG16 Gene

Paralogs for SNHG16 Gene

No data available for Paralogs for SNHG16 Gene

Variants for SNHG16 Gene

Sequence variations from dbSNP and Humsavar for SNHG16 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1000971841 -- 76,563,333(+) TCTCA(C/G)AAATC nc-transcript-variant
rs1001121602 -- 76,561,191(+) AACTC(A/T)GTTTC intron-variant, nc-transcript-variant, upstream-variant-2KB
rs1001154963 -- 76,557,980(+) TTAGG(A/C)GGGTT intron-variant, upstream-variant-2KB
rs1001250913 -- 76,557,140(+) TCTCC(C/G)TTCTT intron-variant, upstream-variant-2KB
rs1001375879 -- 76,562,189(+) CAAGA(A/T)AGAAA intron-variant, downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for SNHG16 Gene

Variant ID Type Subtype PubMed ID
esv3641290 CNV gain 21293372
esv3641291 CNV gain 21293372
nsv828107 CNV loss 20364138

Relevant External Links for SNHG16 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNHG16

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNHG16 Gene

Disorders for SNHG16 Gene

MalaCards: The human disease database

(1) MalaCards diseases for SNHG16 Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
neuroblastoma
  • neuroblastoma 1
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for SNHG16

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNHG16
genes like me logo Genes that share disorders with SNHG16: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SNHG16 Gene

Publications for SNHG16 Gene

  1. Down-regulation of ncRAN, a long non-coding RNA, contributes to colorectal cancer cell migration and invasion and predicts poor overall survival for colorectal cancer patients. (PMID: 24519959) Qi P. … Du X. (Mol. Carcinog. 2014) 2 3 64
  2. ncRAN, a newly identified long noncoding RNA, enhances human bladder tumor growth, invasion, and survival. (PMID: 21147498) Zhu Y. … Li Z. (Urology 2011) 2 3 64
  3. High expression of ncRAN, a novel non-coding RNA mapped to chromosome 17q25.1, is associated with poor prognosis in neuroblastoma. (PMID: 19287950) Yu M. … Nakagawara A. (Int. J. Oncol. 2009) 2 3 64
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  5. Expression profiling and differential screening between hepatoblastomas and the corresponding normal livers: identification of high expression of the PLK1 oncogene as a poor-prognostic indicator of hepatoblastomas. (PMID: 15221005) Yamada S. … Nakagawara A. (Oncogene 2004) 3 64

Products for SNHG16 Gene

Sources for SNHG16 Gene

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