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Aliases for SNHG16 Gene

Subcategory (RNA class) for SNHG16 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for SNHG16 Gene

  • Small Nucleolar RNA Host Gene 16 2 3 5
  • Small Nucleolar RNA Host Gene 16 (Non-Protein Coding) 2 3
  • Non-Coding RNA Expressed In Aggressive Neuroblastoma 2 3
  • NcRAN 3

External Ids for SNHG16 Gene

Previous GeneCards Identifiers for SNHG16 Gene

  • GC17P074570
  • GC17P074578
  • GC17P074592
  • GC17P074604

Summaries for SNHG16 Gene

GeneCards Summary for SNHG16 Gene

SNHG16 (Small Nucleolar RNA Host Gene 16) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with SNHG16 include Neuroblastoma.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNHG16 Gene

Genomics for SNHG16 Gene

Regulatory Elements for SNHG16 Gene

Enhancers for SNHG16 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17F076555 1.4 Ensembl ENCODE 33 +1.7 1695 8.1 HDGF PKNOX1 CREB3L1 WRNIP1 ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 ENSG00000267543 SNHG16 H3F3B UNK ENSG00000267801 METTL23 ENSG00000267546 GC17P076599 SNORD1C
GH17F076596 1.8 FANTOM5 Ensembl ENCODE 11.9 +42.3 42288 6.5 ARNT ARID4B DMAP1 YY1 FOS KLF13 ZNF263 SP5 JUNB ZNF592 METTL23 UNK JMJD6 SPHK1 ENSG00000267342 MFSD11 RNU6-227P H3F3B ST6GALNAC2 SNORD1B
GH17F076564 1.3 Ensembl ENCODE 12.9 +9.8 9828 6.1 PKNOX1 MLX ARID4B FEZF1 DMAP1 YBX1 ZNF2 ZNF143 ZNF207 PAF1 ENSG00000267543 ST6GALNAC2 CDK3 SNHG16 PRCD UNK TEN1 ENSG00000267078 PIR42434
GH17F076505 1.3 Ensembl ENCODE 12.2 -51.3 -51310 1.1 MLX ZFP64 ARID4B SIN3A DMAP1 ZNF48 GLIS2 ZNF143 ZNF263 MXD4 SNHG16 SNORD1B UBE2O AANAT PRCD CYGB SPHK1 PRPSAP1 FBF1 RHBDF2
GH17F076542 1.4 Ensembl ENCODE 8.8 -10.6 -10585 10.1 HDGF PKNOX1 MLX ARID4B SIN3A YBX1 DMAP1 ZNF2 SLC30A9 ZNF143 ENSG00000267543 UNK ENSG00000266980 TRIM65 TRIM47 MFSD11 ENSG00000267342 ENSG00000267801 METTL23 ENSG00000267546
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNHG16 on UCSC Golden Path with GeneCards custom track

Promoters for SNHG16 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001353734 136 2601 HDGF PKNOX1 CREB3L1 MLX WRNIP1 ARID4B SIN3A FEZF1 DMAP1 ZNF2

Genomic Location for SNHG16 Gene

Chromosome:
17
Start:
76,557,764 bp from pter
End:
76,565,348 bp from pter
Size:
7,585 bases
Orientation:
Plus strand

Genomic View for SNHG16 Gene

Genes around SNHG16 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNHG16 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNHG16 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNHG16 Gene

Proteins for SNHG16 Gene

Post-translational modifications for SNHG16 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNHG16 Gene

Domains & Families for SNHG16 Gene

Gene Families for SNHG16 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNHG16: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNHG16 Gene

Function for SNHG16 Gene

Animal Model Products

miRNA for SNHG16 Gene

miRTarBase miRNAs that target SNHG16

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for SNHG16 Gene

Localization for SNHG16 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SNHG16 gene
Compartment Confidence
extracellular 3
nucleus 1
cytosol 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for SNHG16 Gene

Pathways & Interactions for SNHG16 Gene

SuperPathways for SNHG16 Gene

No Data Available

Interacting Proteins for SNHG16 Gene

Gene Ontology (GO) - Biological Process for SNHG16 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNHG16 Gene

Transcripts for SNHG16 Gene

mRNA/cDNA for SNHG16 Gene

(18) Additional mRNA sequences :
(8) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNHG16 Gene

Small nucleolar RNA host gene 16 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SNHG16 Gene

No ASD Table

Relevant External Links for SNHG16 Gene

GeneLoc Exon Structure for
SNHG16
ECgene alternative splicing isoforms for
SNHG16

Expression for SNHG16 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNHG16 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNHG16 Gene:

SNHG16

SOURCE GeneReport for Unigene cluster for SNHG16 Gene:

Hs.288215
genes like me logo Genes that share expression patterns with SNHG16: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNHG16 Gene

Orthologs for SNHG16 Gene

Evolution for SNHG16 Gene

ENSEMBL:
Gene Tree for SNHG16 (if available)
TreeFam:
Gene Tree for SNHG16 (if available)

No data available for Orthologs for SNHG16 Gene

Paralogs for SNHG16 Gene

No data available for Paralogs for SNHG16 Gene

Variants for SNHG16 Gene

Sequence variations from dbSNP and Humsavar for SNHG16 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs10341 -- 76,564,667(-) AAAGA(A/G)GTTTA nc-transcript-variant
rs10624525 -- 76,556,449(+) AAAAA(-/T/TAAT/TAATAAT/TAATAATAAT)AAAAA intron-variant, upstream-variant-2KB
rs10655289 -- 76,562,587(+) GTCTC(-/AA)AAAAA intron-variant
rs10689286 -- 76,556,454(+) AAAAA(-/ATAA)TAATA intron-variant, upstream-variant-2KB
rs111235846 -- 76,565,183(+) CCCCT(C/T)CTCCC nc-transcript-variant, downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for SNHG16 Gene

Variant ID Type Subtype PubMed ID
nsv828107 CNV loss 20364138
esv3641291 CNV gain 21293372
esv3641290 CNV gain 21293372

Relevant External Links for SNHG16 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNHG16

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNHG16 Gene

Disorders for SNHG16 Gene

MalaCards: The human disease database

(1) MalaCards diseases for SNHG16 Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
neuroblastoma
  • neuroblastoma 1
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for SNHG16

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNHG16
genes like me logo Genes that share disorders with SNHG16: view

No data available for UniProtKB/Swiss-Prot and Genatlas for SNHG16 Gene

Publications for SNHG16 Gene

  1. Down-regulation of ncRAN, a long non-coding RNA, contributes to colorectal cancer cell migration and invasion and predicts poor overall survival for colorectal cancer patients. (PMID: 24519959) Qi P. … Du X. (Mol. Carcinog. 2014) 2 3 64
  2. ncRAN, a newly identified long noncoding RNA, enhances human bladder tumor growth, invasion, and survival. (PMID: 21147498) Zhu Y. … Li Z. (Urology 2011) 2 3 64
  3. High expression of ncRAN, a novel non-coding RNA mapped to chromosome 17q25.1, is associated with poor prognosis in neuroblastoma. (PMID: 19287950) Yu M. … Nakagawara A. (Int. J. Oncol. 2009) 2 3 64
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  5. Expression profiling and differential screening between hepatoblastomas and the corresponding normal livers: identification of high expression of the PLK1 oncogene as a poor-prognostic indicator of hepatoblastomas. (PMID: 15221005) Yamada S. … Nakagawara A. (Oncogene 2004) 3 64

Products for SNHG16 Gene

Sources for SNHG16 Gene

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