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Aliases for SNHG15 Gene

Subcategory (RNA class) for SNHG15 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for SNHG15 Gene

  • Small Nucleolar RNA Host Gene 15 2 3 5
  • Small Nucleolar RNA Host Gene 15 (Non-Protein Coding) 2 3
  • MYO1G Upstream Transcript 2 3
  • Putative Uncharacterized Protein C7orf40 3
  • Chromosome 7 Open Reading Frame 40 2
  • Linc-Myo1g 3
  • MYO1GUT 3
  • C7orf40 3

External Ids for SNHG15 Gene

Previous HGNC Symbols for SNHG15 Gene

  • C7orf40

Previous GeneCards Identifiers for SNHG15 Gene

  • GC07M045022

Summaries for SNHG15 Gene

GeneCards Summary for SNHG15 Gene

SNHG15 (Small Nucleolar RNA Host Gene 15) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNHG15 Gene

Genomics for SNHG15 Gene

Regulatory Elements for SNHG15 Gene

Enhancers for SNHG15 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07F044983 0.7 ENCODE 20.7 +1.3 1322 5.2 PKNOX1 ARNT CREB3L1 WRNIP1 SIN3A ZNF2 YY1 CBX5 ZNF143 ZNF207 CCM2 SNHG15 ENSG00000260997 TBRG4 DDX56 RAMP3 GC07M044985 SNORA9
GH07F045108 0.2 ENCODE 20 -124.0 -123974 4.0 PKNOX1 ARNT CREB3L1 WRNIP1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 NACAD SNHG15 CCM2 TBRG4 RAMP3 SNORA5B
GH07F044880 0.8 ENCODE 11.6 +101.9 101866 9.8 HDGF PKNOX1 ARNT CREB3L1 MLX WRNIP1 ARID4B SIN3A DMAP1 ZNF2 H2AFV MIR4649 LINC01952 SNHG15 MYO1G ENSG00000228596 SNORA5B PPIA ZMIZ2 ENSG00000272768
GH07F044845 1.2 ENCODE 11.5 +139.4 139378 4.2 CREB3L1 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC TBX21 MIR4649 CICP20 TBRG4 SNHG15 SNORA5B PPIA ZMIZ2 H2AFV PIR39901
GH07F044111 0.4 Ensembl 10.7 +874.0 874004 2.7 GLIS2 SCRT2 CREM EGR2 ZNF202 SP3 ZEB2 SMARCB1 SP1 MBD2 POLM DDX56 MIR6838 SNORA5C ENSG00000228434 SNHG15 SNORA5A SPDYE1 SNORA5B GCK
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SNHG15 on UCSC Golden Path with GeneCards custom track

Promoters for SNHG15 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000625789 561 2001 PKNOX1 CREB3L1 SIN3A ZNF2 YY1 ZNF143 ZNF207 FOS ZNF263 SP3

Genomic Location for SNHG15 Gene

Chromosome:
7
Start:
44,983,023 bp from pter
End:
44,986,961 bp from pter
Size:
3,939 bases
Orientation:
Minus strand

Genomic View for SNHG15 Gene

Genes around SNHG15 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNHG15 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNHG15 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNHG15 Gene

Proteins for SNHG15 Gene

Post-translational modifications for SNHG15 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNHG15 Gene

Domains & Families for SNHG15 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNHG15 Gene

Function for SNHG15 Gene

Animal Model Products

miRNA for SNHG15 Gene

miRTarBase miRNAs that target SNHG15

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for SNHG15 Gene

Localization for SNHG15 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNHG15 Gene

Pathways & Interactions for SNHG15 Gene

SuperPathways for SNHG15 Gene

No Data Available

Interacting Proteins for SNHG15 Gene

Gene Ontology (GO) - Biological Process for SNHG15 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNHG15 Gene

Transcripts for SNHG15 Gene

mRNA/cDNA for SNHG15 Gene

(3) Additional mRNA sequences :
(10) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNHG15 Gene

Small nucleolar RNA host gene 15 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SNHG15 Gene

No ASD Table

Relevant External Links for SNHG15 Gene

GeneLoc Exon Structure for
SNHG15
ECgene alternative splicing isoforms for
SNHG15

Expression for SNHG15 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNHG15 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNHG15 Gene:

SNHG15

SOURCE GeneReport for Unigene cluster for SNHG15 Gene:

Hs.25892
genes like me logo Genes that share expression patterns with SNHG15: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNHG15 Gene

Orthologs for SNHG15 Gene

This gene was present in the common ancestor of chordates.

Orthologs for SNHG15 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SNORA9 35
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia SNORA9 35
  • 92 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Gm22457 35
  • 92 (a)
ManyToMany
Gm23626 35
  • 90 (a)
ManyToMany
Gm25800 35
  • 87 (a)
ManyToMany
Gm24438 35
  • 75 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia SNORA9 35
  • 82 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia SNORA9 35 35
  • 71 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia SNORA9 35 35 35
  • 59 (a)
ManyToMany
chicken
(Gallus gallus)
Aves SNORA9 35
  • 68 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii SNORA9 35 35
  • 66 (a)
ManyToMany
Species where no ortholog for SNHG15 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for SNHG15 Gene

ENSEMBL:
Gene Tree for SNHG15 (if available)
TreeFam:
Gene Tree for SNHG15 (if available)

Paralogs for SNHG15 Gene

No data available for Paralogs for SNHG15 Gene

Variants for SNHG15 Gene

Sequence variations from dbSNP and Humsavar for SNHG15 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs10228004 -- 44,986,097(+) TCCCA(A/C)CTAGA nc-transcript-variant, upstream-variant-2KB
rs10232306 -- 44,987,137(+) GAAAA(C/G)AAGGG upstream-variant-2KB
rs111886738 -- 44,987,797(+) GTAAT(C/G)GTTTT upstream-variant-2KB
rs112195576 -- 44,987,340(+) GGGCG(A/G)ATCAC upstream-variant-2KB
rs112866932 -- 44,987,299(+) TGGCT(C/T)ACGCC upstream-variant-2KB

Relevant External Links for SNHG15 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNHG15

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNHG15 Gene

Disorders for SNHG15 Gene

Relevant External Links for SNHG15

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNHG15

No disorders were found for SNHG15 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNHG15 Gene

Publications for SNHG15 Gene

  1. Identification of short-lived long non-coding RNAs as surrogate indicators for chemical stress response. (PMID: 24036268) Tani H. … Torimura M. (Biochem. Biophys. Res. Commun. 2013) 2 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 2 3 64
  3. Human chromosome 7: DNA sequence and biology. (PMID: 12690205) Scherer S.W. … Tsui L.-C. (Science 2003) 3 64
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for SNHG15 Gene

Sources for SNHG15 Gene

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