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Aliases for SNHG12 Gene

Subcategory (RNA class) for SNHG12 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SNHG12 Gene

  • Small Nucleolar RNA Host Gene 12 2 3
  • Small Nucleolar RNA Host Gene 12 (Non-Protein Coding) 2 3
  • Long Intergenic Non-Protein Coding RNA 100 2 3
  • C1orf79 3 4
  • Transformation-Related Gene 11 Protein 4
  • Chromosome 1 Open Reading Frame 79 2
  • ASLNC04080 3
  • NCRNA00100 3
  • LINC00100 3
  • PNAS-123 3
  • TRG-11 4

External Ids for SNHG12 Gene

Previous HGNC Symbols for SNHG12 Gene

  • C1orf79

Previous GeneCards Identifiers for SNHG12 Gene

  • GC01U902257
  • GC01M028784
  • GC01M028905

Summaries for SNHG12 Gene

GeneCards Summary for SNHG12 Gene

SNHG12 (Small Nucleolar RNA Host Gene 12) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNHG12 Gene

Genomics for SNHG12 Gene

Regulatory Elements for SNHG12 Gene

Genomic Location for SNHG12 Gene

Chromosome:
1
Start:
28,578,538 bp from pter
End:
28,582,983 bp from pter
Size:
4,446 bases
Orientation:
Minus strand

Genomic View for SNHG12 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNHG12 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNHG12 Gene

Proteins for SNHG12 Gene

  • Protein details for SNHG12 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BXW3-SNH12_HUMAN
    Recommended name:
    Putative uncharacterized protein SNHG12
    Protein Accession:
    Q9BXW3

    Protein attributes for SNHG12 Gene

    Size:
    62 amino acids
    Molecular mass:
    6988 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SNHG12 Gene

Proteomics data for SNHG12 Gene at MOPED

Post-translational modifications for SNHG12 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNHG12 Gene

Domains & Families for SNHG12 Gene

Protein Domains for SNHG12 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for SNHG12 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNHG12: view

No data available for Gene Families and UniProtKB/Swiss-Prot for SNHG12 Gene

Function for SNHG12 Gene

Phenotypes for SNHG12 Gene

GenomeRNAi human phenotypes for SNHG12:
genes like me logo Genes that share phenotypes with SNHG12: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNHG12 Gene

Localization for SNHG12 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNHG12 Gene

Pathways & Interactions for SNHG12 Gene

SuperPathways for SNHG12 Gene

No Data Available

Interacting Proteins for SNHG12 Gene

Gene Ontology (GO) - Biological Process for SNHG12 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNHG12 Gene

Drugs & Compounds for SNHG12 Gene

No Compound Related Data Available

Transcripts for SNHG12 Gene

Unigene Clusters for SNHG12 Gene

Small nucleolar RNA host gene 12 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SNHG12 Gene

ExUns: 1a · 1b · 1c ^ 2a · 2b · 2c ^ 3a · 3b · 3c · 3d ^ 4a · 4b · 4c · 4d · 4e ^ 5 ^ 6a · 6b
SP1: - - - - - - - -
SP2: - - - - - - - -
SP3: - - - - - -
SP4: - - - - -
SP5: - -
SP6: - - - -
SP7: -
SP8: - - - - -
SP9: - - -
SP10:

Relevant External Links for SNHG12 Gene

GeneLoc Exon Structure for
SNHG12
ECgene alternative splicing isoforms for
SNHG12

Expression for SNHG12 Gene

mRNA expression in normal human tissues for SNHG12 Gene

SOURCE GeneReport for Unigene cluster for SNHG12 Gene Hs.632377

genes like me logo Genes that share expression patterns with SNHG12: view

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for SNHG12 Gene

Orthologs for SNHG12 Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for SNHG12 Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
Mammalia Snhg12 16
Species with no ortholog for SNHG12:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNHG12 Gene

ENSEMBL:
Gene Tree for SNHG12 (if available)
TreeFam:
Gene Tree for SNHG12 (if available)

Paralogs for SNHG12 Gene

No data available for Paralogs for SNHG12 Gene

Variants for SNHG12 Gene

Sequence variations from dbSNP and Humsavar for SNHG12 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs12131243 -- 28,583,679(+) gctgg(A/G)attac upstream-variant-2KB
rs61786021 -- 28,583,496(+) GCTCC(C/G)GCTCC upstream-variant-2KB
rs61786022 -- 28,583,497(+) CTCCC(C/G)CTCCC upstream-variant-2KB
rs79604066 -- 28,583,391(+) GTCAA(A/T)TTTTT upstream-variant-2KB
rs111752459 -- 28,583,435(+) GAGAC(A/G)GAGCT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNHG12 Gene

Variant ID Type Subtype PubMed ID
esv2671121 CNV Deletion 23128226

Relevant External Links for SNHG12 Gene

HapMap Linkage Disequilibrium report
SNHG12

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNHG12 Gene

Disorders for SNHG12 Gene

Relevant External Links for SNHG12

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNHG12
genes like me logo Genes that share disorders with SNHG12: view

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNHG12 Gene

Publications for SNHG12 Gene

  1. Microarray expression profile of lncRNAs and the upregulated ASLNC04080 lncRNA in human endometrial carcinoma. (PMID: 25695231) Zhai W. … Chen W. (Int. J. Oncol. 2015) 2 67
  2. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 67
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 67
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 67

Products for SNHG12 Gene

Sources for SNHG12 Gene

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