Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SNHG12 Gene

Subcategory (RNA class) for SNHG12 Gene


Quality Score for this RNA gene is


Aliases for SNHG12 Gene

  • Small Nucleolar RNA Host Gene 12 2 3
  • Small Nucleolar RNA Host Gene 12 (Non-Protein Coding) 2 3
  • Long Intergenic Non-Protein Coding RNA 100 2 3
  • C1orf79 3 4
  • Transformation-Related Gene 11 Protein 4
  • Chromosome 1 Open Reading Frame 79 2
  • ASLNC04080 3
  • NCRNA00100 3
  • LINC00100 3
  • PNAS-123 3
  • TRG-11 4

External Ids for SNHG12 Gene

ORGUL Members for SNHG12 Gene

Previous HGNC Symbols for SNHG12 Gene

  • C1orf79

Previous GeneCards Identifiers for SNHG12 Gene

  • GC01U902257
  • GC01M028784
  • GC01M028905

Summaries for SNHG12 Gene

GeneCards Summary for SNHG12 Gene

SNHG12 (Small Nucleolar RNA Host Gene 12) is an RNA Gene, and is affiliated with the antisense RNA class. Diseases associated with SNHG12 include mast cell neoplasm.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNHG12 Gene

Genomics for SNHG12 Gene

Regulatory Elements for SNHG12 Gene

Genomic Location for SNHG12 Gene

28,578,538 bp from pter
28,582,983 bp from pter
4,446 bases
Minus strand

Genomic View for SNHG12 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNHG12 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNHG12 Gene

Proteins for SNHG12 Gene

  • Protein details for SNHG12 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Putative uncharacterized protein SNHG12
    Protein Accession:
    Secondary Accessions:

    Protein attributes for SNHG12 Gene

    62 amino acids
    Molecular mass:
    6988 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SNHG12 Gene

Proteomics data for SNHG12 Gene at MOPED

Post-translational modifications for SNHG12 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNHG12 Gene

Domains for SNHG12 Gene

Protein Domains for SNHG12 Gene


Suggested Antigen Peptide Sequences for SNHG12 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNHG12: view

No data available for Gene Families and UniProtKB/Swiss-Prot for SNHG12 Gene

Function for SNHG12 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNHG12 Gene

Localization for SNHG12 Gene

Subcellular locations from

Jensen Localization Image for SNHG12 Gene COMPARTMENTS Subcellular localization image for SNHG12 gene
Compartment Confidence
extracellular 3
cytosol 2
plasma membrane 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for SNHG12 Gene

Pathways for SNHG12 Gene

SuperPathways for SNHG12 Gene

No Data Available

Interacting Proteins for SNHG12 Gene

Gene Ontology (GO) - Biological Process for SNHG12 Gene


No data available for Pathways by source for SNHG12 Gene

Transcripts for SNHG12 Gene

mRNA/cDNA for SNHG12 Gene

Unigene Clusters for SNHG12 Gene

Small nucleolar RNA host gene 12 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SNHG12 Gene

ExUns: 1a · 1b · 1c ^ 2a · 2b · 2c ^ 3a · 3b · 3c · 3d ^ 4a · 4b · 4c · 4d · 4e ^ 5 ^ 6a · 6b
SP1: - - - - - - - -
SP2: - - - - - - - -
SP3: - - - - - -
SP4: - - - - -
SP5: - -
SP6: - - - -
SP7: -
SP8: - - - - -
SP9: - - -

Relevant External Links for SNHG12 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SNHG12 Gene

mRNA expression in normal human tissues for SNHG12 Gene

SOURCE GeneReport for Unigene cluster for SNHG12 Gene Hs.632377

genes like me logo Genes that share expressions with SNHG12: view

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for SNHG12 Gene

Orthologs for SNHG12 Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for SNHG12 Gene

Organism Taxonomy Gene Similarity Type Details
(Mus musculus)
Mammalia Snhg12 16
Species with no ortholog for SNHG12:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNHG12 Gene

Gene Tree for SNHG12 (if available)
Gene Tree for SNHG12 (if available)

Paralogs for SNHG12 Gene

No data available for Paralogs for SNHG12 Gene

Variants for SNHG12 Gene

Sequence variations from dbSNP and Humsavar for SNHG12 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs79604066 -- 28,583,391(+) GTCAA(A/T)TTTTT upstream-variant-2KB
rs111752459 -- 28,583,435(+) GAGAC(A/G)GAGCT upstream-variant-2KB
rs113486210 -- 28,583,652(+) GATCC(A/T)CCCGC upstream-variant-2KB
rs180795290 -- 28,583,226(+) ATAAT(A/C)TGACT upstream-variant-2KB
rs181748787 -- 28,583,510(+) GTTCA(C/T)GCCAT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNHG12 Gene

Variant ID Type Subtype PubMed ID
esv2671121 CNV Deletion 23128226

Relevant External Links for SNHG12 Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SNHG12 Gene

Disorders for SNHG12 Gene

MalaCards: The human disease database

MalaCards: The human disease database.

Search for SNHG12 Gene in MalaCards »

(1) Disease for SNHG12 Gene

(1) University of Copenhagen DISEASES for SNHG12 Gene

genes like me logo Genes that share disorders with SNHG12: view

No data available for OMIM , UniProtKB/Swiss-Prot , Novoseek inferred disease relationships , Genatlas and External Links for SNHG12 Gene

Publications for SNHG12 Gene

  1. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 3 4
  2. Microarray expression profile of lncRNAs and the upregulated ASLNC04080 lncRNA in human endometrial carcinoma. (PMID: 25695231) Zhai W. … Chen W. (Int. J. Oncol. 2015) 2 3
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3

Products for SNHG12 Gene

Sources for SNHG12 Gene

Back to Top