Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SNHG12 Gene

Subcategory (RNA class) for SNHG12 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SNHG12 Gene

  • Small Nucleolar RNA Host Gene 12 2 3 5
  • Small Nucleolar RNA Host Gene 12 (Non-Protein Coding) 2 3
  • Long Intergenic Non-Protein Coding RNA 100 2 3
  • C1orf79 3 4
  • Transformation-Related Gene 11 Protein 4
  • Chromosome 1 Open Reading Frame 79 2
  • ASLNC04080 3
  • NCRNA00100 3
  • LINC00100 3
  • PNAS-123 3
  • TRG-11 4

External Ids for SNHG12 Gene

Previous HGNC Symbols for SNHG12 Gene

  • C1orf79

Previous GeneCards Identifiers for SNHG12 Gene

  • GC01U902257
  • GC01M028784
  • GC01M028905

Summaries for SNHG12 Gene

GeneCards Summary for SNHG12 Gene

SNHG12 (Small Nucleolar RNA Host Gene 12) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNHG12 Gene

Genomics for SNHG12 Gene

Regulatory Elements for SNHG12 Gene

Enhancers for SNHG12 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F028881 1.8 FANTOM5 Ensembl ENCODE 84 -302.2 -302227 6.8 CREB3L1 MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF416 ZNF143 ZNF548 TRNAU1AP SNHG12 GMEB1 ENSG00000237934 PHACTR4 TMEM200B SNORA73B SNHG3 LINC01756 ENSG00000228176
GH01F028647 1.2 ENCODE 46.5 -65.5 -65463 2.7 CREB3L1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC GMEB1 PHACTR4 SNHG12 ENSG00000237934 TRNAU1AP SNORA73B ENSG00000231344 TMEM200B SNHG3 LINC01756
GH01F028579 1.2 ENCODE 36.4 +1.8 1783 4.5 HDGF PKNOX1 CREB3L1 WRNIP1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 PHACTR4 GMEB1 SNHG12 TMEM200B TRNAU1AP SNORA73B ENSG00000237934 ENSG00000231344 SNHG3 LINC01756
GH01F029236 1.4 FANTOM5 ENCODE 30.6 -655.7 -655732 5.1 HDGF CREB3L1 ARID4B SIN3A DMAP1 ZNF2 CBX5 ZNF207 ZNF143 SP3 TRNAU1AP SNHG12 TMEM200B PHACTR4 LINC01756 ENSG00000228176 GMEB1 SNORA73B RAB42 SNHG3
GH01F028320 1.2 ENCODE 35.5 +260.0 259955 5.2 CREB3L1 ZFP64 FEZF1 DMAP1 YY1 ZNF143 ZNF263 SP3 NFYC TBX21 PHACTR4 GMEB1 ENSG00000237934 SNHG12 ACTG1P20 TMEM200B ENSG00000231344 TRNAU1AP SNORA73B TAF12
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNHG12 on UCSC Golden Path with GeneCards custom track

Promoters for SNHG12 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000280878 1283 3001 HDGF PKNOX1 CREB3L1 MLX WRNIP1 ZFP64 ARID4B SIN3A DMAP1 ZNF2

Genomic Location for SNHG12 Gene

Chromosome:
1
Start:
28,578,538 bp from pter
End:
28,582,983 bp from pter
Size:
4,446 bases
Orientation:
Minus strand

Genomic View for SNHG12 Gene

Genes around SNHG12 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNHG12 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNHG12 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNHG12 Gene

Proteins for SNHG12 Gene

  • Protein details for SNHG12 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BXW3-SNH12_HUMAN
    Recommended name:
    Putative uncharacterized protein SNHG12
    Protein Accession:
    Q9BXW3

    Protein attributes for SNHG12 Gene

    Size:
    62 amino acids
    Molecular mass:
    6988 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SNHG12 Gene

Post-translational modifications for SNHG12 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNHG12 Gene

Domains & Families for SNHG12 Gene

Protein Domains for SNHG12 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for SNHG12 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNHG12: view

No data available for Gene Families and UniProtKB/Swiss-Prot for SNHG12 Gene

Function for SNHG12 Gene

Phenotypes for SNHG12 Gene

GenomeRNAi human phenotypes for SNHG12:
genes like me logo Genes that share phenotypes with SNHG12: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNHG12 Gene

Localization for SNHG12 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNHG12 Gene

Pathways & Interactions for SNHG12 Gene

SuperPathways for SNHG12 Gene

No Data Available

Interacting Proteins for SNHG12 Gene

Gene Ontology (GO) - Biological Process for SNHG12 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNHG12 Gene

Transcripts for SNHG12 Gene

Unigene Clusters for SNHG12 Gene

Small nucleolar RNA host gene 12 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SNHG12 Gene

ExUns: 1a · 1b · 1c ^ 2a · 2b · 2c ^ 3a · 3b · 3c · 3d ^ 4a · 4b · 4c · 4d · 4e ^ 5 ^ 6a · 6b
SP1: - - - - - - - -
SP2: - - - - - - - -
SP3: - - - - - -
SP4: - - - - -
SP5: - -
SP6: - - - -
SP7: -
SP8: - - - - -
SP9: - - -
SP10:

Relevant External Links for SNHG12 Gene

GeneLoc Exon Structure for
SNHG12
ECgene alternative splicing isoforms for
SNHG12

Expression for SNHG12 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNHG12 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNHG12 Gene:

SNHG12

SOURCE GeneReport for Unigene cluster for SNHG12 Gene:

Hs.632377
genes like me logo Genes that share expression patterns with SNHG12: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNHG12 Gene

Orthologs for SNHG12 Gene

Evolution for SNHG12 Gene

ENSEMBL:
Gene Tree for SNHG12 (if available)
TreeFam:
Gene Tree for SNHG12 (if available)

No data available for Orthologs for SNHG12 Gene

Paralogs for SNHG12 Gene

No data available for Paralogs for SNHG12 Gene

Variants for SNHG12 Gene

Sequence variations from dbSNP and Humsavar for SNHG12 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs111752459 -- 28,583,435(+) GAGAC(A/G)GAGCT upstream-variant-2KB
rs111977166 -- 28,579,770(+) CCTGT(C/T)TGAAA intron-variant, nc-transcript-variant, upstream-variant-2KB
rs113486210 -- 28,583,652(+) GATCC(A/T)CCCGC upstream-variant-2KB
rs114366600 -- 28,578,526(+) AAATA(C/T)AAACA intron-variant, nc-transcript-variant, downstream-variant-500B, utr-variant-3-prime
rs116090399 -- 28,578,153(+) AAGAA(C/T)TAGTA intron-variant, nc-transcript-variant, utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for SNHG12 Gene

Variant ID Type Subtype PubMed ID
nsv545916 CNV gain 21841781
esv2671121 CNV deletion 23128226

Relevant External Links for SNHG12 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNHG12

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNHG12 Gene

Disorders for SNHG12 Gene

Relevant External Links for SNHG12

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNHG12

No disorders were found for SNHG12 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNHG12 Gene

Publications for SNHG12 Gene

  1. CRISPRi-based genome-scale identification of functional long noncoding RNA loci in human cells. (PMID: 27980086) Liu S.J. … Lim D.A. (Science 2016) 2 3 64
  2. Microarray expression profile of lncRNAs and the upregulated ASLNC04080 lncRNA in human endometrial carcinoma. (PMID: 25695231) Zhai W. … Chen W. (Int. J. Oncol. 2015) 2 3 64
  3. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 3 4 64
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for SNHG12 Gene

Sources for SNHG12 Gene

Content
Loading form....