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Aliases for SNHG11 Gene

Subcategory (RNA class) for SNHG11 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SNHG11 Gene

  • Small Nucleolar RNA Host Gene 11 2 3 5
  • Small Nucleolar RNA Host Gene 11 (Non-Protein Coding) 2 3
  • Long Intergenic Non-Protein Coding RNA 101 2 3
  • Small Nucleolar RNA Host Gene (Non-Protein Coding) 11 3
  • Chromosome 20 Open Reading Frame 198 2
  • NCRNA00101 3
  • LINC00101 3
  • C20orf198 3

External Ids for SNHG11 Gene

Previous HGNC Symbols for SNHG11 Gene

  • C20orf198

Previous GeneCards Identifiers for SNHG11 Gene

  • GC20P036520
  • GC20P036523
  • GC20P036526
  • GC20P036529
  • GC20P037075
  • GC20P033810

Summaries for SNHG11 Gene

Entrez Gene Summary for SNHG11 Gene

  • This gene is a member of the non-protein-coding multiple snoRNA host gene family. Two snoRNAs are derived from the introns of this host gene. Although many alternative splice variants have been observed, the gene is thought to have no protein-coding potential. [provided by RefSeq, Jul 2008]

GeneCards Summary for SNHG11 Gene

SNHG11 (Small Nucleolar RNA Host Gene 11) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNHG11 Gene

Genomics for SNHG11 Gene

Regulatory Elements for SNHG11 Gene

Enhancers for SNHG11 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20G038471 1.1 ENCODE 12.1 +26.1 26069 2.5 PKNOX1 MLX ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 ZNF263 SP3 ENSG00000224635 SNORA60 SNHG11 ENSG00000201811 SNHG17 SNORA71D SNORA71C SNORA71A SNORA71B ARHGAP40
GH20G038373 0.8 ENCODE 10.2 -73.0 -72967 0.2 BCOR HDAC1 ETV1 ZMYM3 NFXL1 FOXM1 GATA2 ADNP NR2F6 SMARCA5 ENSG00000224635 SNORA71A SNORA71B ENSG00000206249 SNORA71C SNHG17 SNORA71D ENSG00000201811 SNHG11 SNORA60
GH20G038572 0.8 ENCODE 9.9 +127.3 127317 1.8 CTCF FOXA2 MXI1 SAP130 SIN3A INSM2 DNMT3B RAD21 TEAD3 FOSL1 SNHG17 SNORA71B SNORA71A SNHG11 SNORA60 ENSG00000201811 SNORA71D SNORA71C ENSG00000224635 ARHGAP40
GH20G038519 0.4 VISTA 10.8 +73.8 73849 1.4 CEBPB SNORA60 SNHG11 ENSG00000201811 SNHG17 SNORA71D SNORA71C MIR548O2 RPS3P2
GH20G038446 1.2 ENCODE 0.7 +0.9 882 2.8 MLX CREB3L1 ZFP64 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC SNHG17 ENSG00000224635 SNHG11 GC20P038459
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNHG11 on UCSC Golden Path with GeneCards custom track

Promoters for SNHG11 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000137001 322 1001 MLX CREB3L1 ZFP64 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC

Genomic Location for SNHG11 Gene

Chromosome:
20
Start:
38,446,578 bp from pter
End:
38,450,921 bp from pter
Size:
4,344 bases
Orientation:
Plus strand

Genomic View for SNHG11 Gene

Genes around SNHG11 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNHG11 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNHG11 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNHG11 Gene

Proteins for SNHG11 Gene

Post-translational modifications for SNHG11 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNHG11 Gene

Domains & Families for SNHG11 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNHG11 Gene

Function for SNHG11 Gene

Phenotypes for SNHG11 Gene

GenomeRNAi human phenotypes for SNHG11:
genes like me logo Genes that share phenotypes with SNHG11: view

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNHG11 Gene

Localization for SNHG11 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNHG11 Gene

Pathways & Interactions for SNHG11 Gene

SuperPathways for SNHG11 Gene

No Data Available

Interacting Proteins for SNHG11 Gene

Gene Ontology (GO) - Biological Process for SNHG11 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNHG11 Gene

Drugs & Compounds for SNHG11 Gene

No Compound Related Data Available

Transcripts for SNHG11 Gene

Unigene Clusters for SNHG11 Gene

Small nucleolar RNA host gene 11 (non-protein coding):
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNHG11 Gene

ExUns: 1a · 1b · 1c ^ 2a · 2b · 2c · 2d ^ 3a · 3b ^ 4 ^ 5 ^ 6a · 6b · 6c · 6d ^ 7a · 7b · 7c · 7d · 7e
SP1: - - - - -
SP2: - - - - -
SP3: - - - -
SP4: - - -
SP5: -
SP6: - - - - -
SP7: - -
SP8: - - -
SP9: - - - -
SP10:
SP11: - - -
SP12: - -
SP13: - - -

Relevant External Links for SNHG11 Gene

GeneLoc Exon Structure for
SNHG11
ECgene alternative splicing isoforms for
SNHG11

Expression for SNHG11 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNHG11 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNHG11 Gene:

SNHG11

SOURCE GeneReport for Unigene cluster for SNHG11 Gene:

Hs.16936
genes like me logo Genes that share expression patterns with SNHG11: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNHG11 Gene

Orthologs for SNHG11 Gene

Evolution for SNHG11 Gene

ENSEMBL:
Gene Tree for SNHG11 (if available)
TreeFam:
Gene Tree for SNHG11 (if available)

No data available for Orthologs for SNHG11 Gene

Paralogs for SNHG11 Gene

No data available for Paralogs for SNHG11 Gene

Variants for SNHG11 Gene

Sequence variations from dbSNP and Humsavar for SNHG11 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs1000630883 -- 38,447,019(+) TGAGC(C/T)GCGCC intron-variant, upstream-variant-2KB
rs1001525994 -- 38,448,074(+) TTTGC(C/T)CTTTT intron-variant, upstream-variant-2KB
rs1001913821 -- 38,446,410(+) TGAGG(A/G)CCCAC upstream-variant-2KB
rs1002154 -- 38,448,977(-) AGAAA(A/G)GGCAG intron-variant, upstream-variant-2KB
rs1002261348 -- 38,446,717(+) GGCTG(A/C)GGCCT nc-transcript-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNHG11 Gene

Variant ID Type Subtype PubMed ID
esv2758794 CNV gain 17122850
esv35121 CNV gain 17911159
nsv1058457 CNV loss 25217958
nsv1063495 CNV gain 25217958
nsv509769 CNV insertion 20534489
nsv817893 CNV gain 17921354

Relevant External Links for SNHG11 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNHG11

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNHG11 Gene

Disorders for SNHG11 Gene

Relevant External Links for SNHG11

Genetic Association Database (GAD)
SNHG11
Human Genome Epidemiology (HuGE) Navigator
SNHG11
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNHG11

No disorders were found for SNHG11 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNHG11 Gene

Publications for SNHG11 Gene

  1. Use of genome-wide expression data to mine the "Gray Zone" of GWA studies leads to novel candidate obesity genes. (PMID: 20532202) Naukkarinen J. … Peltonen L. (PLoS Genet. 2010) 3 46 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64
  3. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3 64
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  5. The sequence of the human genome. (PMID: 11181995) Venter J.C. … Zhu X. (Science 2001) 3 64

Products for SNHG11 Gene

Sources for SNHG11 Gene

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