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Aliases for SNHG11 Gene

Subcategory (RNA class) for SNHG11 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SNHG11 Gene

  • Small Nucleolar RNA Host Gene 11 2 3 5
  • Small Nucleolar RNA Host Gene 11 (Non-Protein Coding) 2 3
  • Long Intergenic Non-Protein Coding RNA 101 2 3
  • Small Nucleolar RNA Host Gene (Non-Protein Coding) 11 3
  • Chromosome 20 Open Reading Frame 198 2
  • NCRNA00101 3
  • LINC00101 3
  • C20orf198 3

External Ids for SNHG11 Gene

Previous HGNC Symbols for SNHG11 Gene

  • C20orf198

Previous GeneCards Identifiers for SNHG11 Gene

  • GC20P036520
  • GC20P036523
  • GC20P036526
  • GC20P036529
  • GC20P037075
  • GC20P033810

Summaries for SNHG11 Gene

Entrez Gene Summary for SNHG11 Gene

  • This gene is a member of the non-protein-coding multiple snoRNA host gene family. Two snoRNAs are derived from the introns of this host gene. Although many alternative splice variants have been observed, the gene is thought to have no protein-coding potential. [provided by RefSeq, Jul 2008]

GeneCards Summary for SNHG11 Gene

SNHG11 (Small Nucleolar RNA Host Gene 11) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNHG11 Gene

Genomics for SNHG11 Gene

Regulatory Elements for SNHG11 Gene

Promoters for SNHG11 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around SNHG11 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNHG11 Gene

Chromosome:
20
Start:
38,446,578 bp from pter
End:
38,450,921 bp from pter
Size:
4,344 bases
Orientation:
Plus strand

Genomic View for SNHG11 Gene

Genes around SNHG11 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNHG11 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNHG11 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNHG11 Gene

Proteins for SNHG11 Gene

Post-translational modifications for SNHG11 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNHG11 Gene

Domains & Families for SNHG11 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNHG11 Gene

Function for SNHG11 Gene

Phenotypes for SNHG11 Gene

GenomeRNAi human phenotypes for SNHG11:
genes like me logo Genes that share phenotypes with SNHG11: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNHG11 Gene

Localization for SNHG11 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNHG11 Gene

Pathways & Interactions for SNHG11 Gene

SuperPathways for SNHG11 Gene

No Data Available

Interacting Proteins for SNHG11 Gene

Gene Ontology (GO) - Biological Process for SNHG11 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNHG11 Gene

Drugs & Compounds for SNHG11 Gene

No Compound Related Data Available

Transcripts for SNHG11 Gene

Unigene Clusters for SNHG11 Gene

Small nucleolar RNA host gene 11 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SNHG11 Gene

ExUns: 1a · 1b · 1c ^ 2a · 2b · 2c · 2d ^ 3a · 3b ^ 4 ^ 5 ^ 6a · 6b · 6c · 6d ^ 7a · 7b · 7c · 7d · 7e
SP1: - - - - -
SP2: - - - - -
SP3: - - - -
SP4: - - -
SP5: -
SP6: - - - - -
SP7: - -
SP8: - - -
SP9: - - - -
SP10:
SP11: - - -
SP12: - -
SP13: - - -

Relevant External Links for SNHG11 Gene

GeneLoc Exon Structure for
SNHG11
ECgene alternative splicing isoforms for
SNHG11

Expression for SNHG11 Gene

mRNA expression in normal human tissues for SNHG11 Gene

SOURCE GeneReport for Unigene cluster for SNHG11 Gene Hs.16936

genes like me logo Genes that share expression patterns with SNHG11: view

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for SNHG11 Gene

Orthologs for SNHG11 Gene

Evolution for SNHG11 Gene

ENSEMBL:
Gene Tree for SNHG11 (if available)
TreeFam:
Gene Tree for SNHG11 (if available)

No data available for Orthologs for SNHG11 Gene

Paralogs for SNHG11 Gene

No data available for Paralogs for SNHG11 Gene

Variants for SNHG11 Gene

Sequence variations from dbSNP and Humsavar for SNHG11 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs5841293 -- 38,445,135(+) TCTCA(-/A/AA)AAAAA upstream-variant-2KB
rs6025683 -- 38,445,765(+) CCCTT(C/T)CCTTC upstream-variant-2KB
rs6025685 -- 38,445,817(+) AAGCG(A/T)AAGTT upstream-variant-2KB
rs112304758 -- 38,450,977(+) ATCTC(C/T)GTGTG downstream-variant-500B
rs114690893 -- 38,445,711(+) GGATG(A/G)AATTC upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNHG11 Gene

Variant ID Type Subtype PubMed ID
esv35121 CNV Gain 17911159
dgv1327e1 CNV Complex 17122850
nsv817893 CNV Gain 17921354
nsv509769 CNV Insertion 20534489

Relevant External Links for SNHG11 Gene

HapMap Linkage Disequilibrium report
SNHG11

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNHG11 Gene

Disorders for SNHG11 Gene

Relevant External Links for SNHG11

Genetic Association Database (GAD)
SNHG11
Human Genome Epidemiology (HuGE) Navigator
SNHG11
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNHG11

No disorders were found for SNHG11 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNHG11 Gene

Publications for SNHG11 Gene

  1. Use of genome-wide expression data to mine the "Gray Zone" of GWA studies leads to novel candidate obesity genes. (PMID: 20532202) Naukkarinen J. … Peltonen L. (PLoS Genet. 2010) 3 48 67
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  3. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  5. The sequence of the human genome. (PMID: 11181995) Venter J.C. … Zhu X. (Science 2001) 3

Products for SNHG11 Gene

Sources for SNHG11 Gene

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