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Aliases for SNHG11 Gene

Subcategory (RNA class) for SNHG11 Gene


Quality Score for this RNA gene is


Aliases for SNHG11 Gene

  • Small Nucleolar RNA Host Gene 11 2 3
  • Small Nucleolar RNA Host Gene 11 (Non-Protein Coding) 2 3
  • Long Intergenic Non-Protein Coding RNA 101 2 3
  • Small Nucleolar RNA Host Gene (Non-Protein Coding) 11 3
  • Chromosome 20 Open Reading Frame 198 2
  • NCRNA00101 3
  • LINC00101 3
  • C20orf198 3

External Ids for SNHG11 Gene

ORGUL Members for SNHG11 Gene

Previous HGNC Symbols for SNHG11 Gene

  • C20orf198

Previous GeneCards Identifiers for SNHG11 Gene

  • GC20P036520
  • GC20P036523
  • GC20P036526
  • GC20P036529
  • GC20P037075
  • GC20P033810

Summaries for SNHG11 Gene

Entrez Gene Summary for SNHG11 Gene

  • This gene is a member of the non-protein-coding multiple snoRNA host gene family. Two snoRNAs are derived from the introns of this host gene. Although many alternative splice variants have been observed, the gene is thought to have no protein-coding potential. [provided by RefSeq, Jul 2008]

GeneCards Summary for SNHG11 Gene

SNHG11 (Small Nucleolar RNA Host Gene 11) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNHG11 Gene

Genomics for SNHG11 Gene

Regulatory Elements for SNHG11 Gene

Genomic Location for SNHG11 Gene

38,446,578 bp from pter
38,450,921 bp from pter
4,344 bases
Plus strand

Genomic View for SNHG11 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNHG11 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNHG11 Gene

Proteins for SNHG11 Gene

Post-translational modifications for SNHG11 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNHG11 Gene

Domains for SNHG11 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNHG11 Gene

Function for SNHG11 Gene

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for SNHG11

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNHG11 Gene

Localization for SNHG11 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNHG11 Gene

Pathways for SNHG11 Gene

SuperPathways for SNHG11 Gene

No Data Available

Interacting Proteins for SNHG11 Gene

Gene Ontology (GO) - Biological Process for SNHG11 Gene


No data available for Pathways by source for SNHG11 Gene

Transcripts for SNHG11 Gene

Unigene Clusters for SNHG11 Gene

Small nucleolar RNA host gene 11 (non-protein coding):
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for SNHG11

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNHG11 Gene

ExUns: 1a · 1b · 1c ^ 2a · 2b · 2c · 2d ^ 3a · 3b ^ 4 ^ 5 ^ 6a · 6b · 6c · 6d ^ 7a · 7b · 7c · 7d · 7e
SP1: - - - - -
SP2: - - - - -
SP3: - - - -
SP4: - - -
SP5: -
SP6: - - - - -
SP7: - -
SP8: - - -
SP9: - - - -
SP11: - - -
SP12: - -
SP13: - - -

Relevant External Links for SNHG11 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SNHG11 Gene

mRNA expression in normal human tissues for SNHG11 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

SOURCE GeneReport for Unigene cluster for SNHG11 Gene Hs.16936

genes like me logo Genes that share expressions with SNHG11: view

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for SNHG11 Gene

Orthologs for SNHG11 Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for SNHG11 Gene

Organism Taxonomy Gene Similarity Type Details
(Mus musculus)
Mammalia Snhg11 16
Species with no ortholog for SNHG11:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNHG11 Gene

Gene Tree for SNHG11 (if available)
Gene Tree for SNHG11 (if available)

Paralogs for SNHG11 Gene

No data available for Paralogs for SNHG11 Gene

Variants for SNHG11 Gene

Sequence variations from dbSNP and Humsavar for SNHG11 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type MAF
rs12193 -- 38,450,387(+) TGCAG(C/G)CACTG nc-transcript-variant
rs12397 -- 38,450,594(+) ATGGC(C/T)GGACC nc-transcript-variant
rs805530 -- 38,445,556(+) CAACC(A/G)TATGT upstream-variant-2KB
rs805532 -- 38,451,364(+) GGAGT(A/G)TATGA downstream-variant-500B
rs1303572 -- 38,450,955(+) GTTTG(G/T)TTTTT downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for SNHG11 Gene

Variant ID Type Subtype PubMed ID
esv35121 CNV Gain 17911159
dgv1327e1 CNV Complex 17122850
nsv817893 CNV Gain 17921354
nsv509769 CNV Insertion 20534489

Relevant External Links for SNHG11 Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SNHG11 Gene

Disorders for SNHG11 Gene

Relevant External Links for SNHG11

Genetic Association Database (GAD)
Human Genome Epidemiology (HuGE) Navigator

No disorders were found for SNHG11 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships and Genatlas for SNHG11 Gene

Publications for SNHG11 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. Use of genome-wide expression data to mine the "Gray Zone" of GWA studies leads to novel candidate obesity genes. (PMID: 20532202) Naukkarinen J. … Peltonen L. (PLoS Genet. 2010) 3 48
  3. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  5. The sequence of the human genome. (PMID: 11181995) Venter J.C. … Zhu X. (Science 2001) 3

Products for SNHG11 Gene

Sources for SNHG11 Gene

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