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Aliases for SNHG10 Gene

Subcategory (RNA class) for SNHG10 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for SNHG10 Gene

  • Small Nucleolar RNA Host Gene 10 2 3
  • Small Nucleolar RNA Host Gene 10 (Non-Protein Coding) 2 3
  • Long Intergenic Non-Protein Coding RNA 63 2 3
  • Chromosome 14 Open Reading Frame 62 2
  • Non-Protein Coding RNA 63 2
  • NCRNA00063 3
  • LINC00063 3
  • C14orf62 3

External Ids for SNHG10 Gene

Previous Symbols for SNHG10 Gene

  • C14orf62

Summaries for SNHG10 Gene

Entrez Gene Summary for SNHG10 Gene

  • This gene is small nucleolar RNA host gene 10 and represents a non-protein coding RNA. Alternatively spliced transcript variants have been found for this gene. [provided by RefSeq, Jan 2013]

GeneCards Summary for SNHG10 Gene

SNHG10 (Small Nucleolar RNA Host Gene 10) is a RNA Gene, and belongs to antisense RNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNHG10 Gene

Genomics for SNHG10 Gene

Genomic Location for SNHG10 Gene

Start:
95,532,297 bp from pter
End:
95,534,872 bp from pter
Size:
2,576 bases
Orientation:
Minus strand

Genomic View for SNHG10 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNHG10 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNHG10 Gene

Regulatory Elements for SNHG10 Gene

Proteins for SNHG10 Gene

Post-translational modifications for SNHG10 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNHG10 Gene

Domains for SNHG10 Gene

Gene Families for SNHG10 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs
genes like me logo Genes that share domains with SNHG10: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for SNHG10 Gene

Function for SNHG10 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNHG10 Gene

Localization for SNHG10 Gene

No data available for Gene Ontology (GO) - Cellular Components for SNHG10 Gene

Pathways for SNHG10 Gene

SuperPathways for SNHG10 Gene

No Data Available

Interacting Proteins for SNHG10 Gene

Gene Ontology (GO) - Biological Process for SNHG10 Gene

None

No data available for Pathways by source for SNHG10 Gene

Transcripts for SNHG10 Gene

mRNA/cDNA for SNHG10 Gene

(5) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNHG10 Gene

Small nucleolar RNA host gene 10 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SNHG10 Gene

No ASD Table

Relevant External Links for SNHG10 Gene

GeneLoc Exon Structure for
SNHG10
ECgene alternative splicing isoforms for
SNHG10

Expression for SNHG10 Gene

mRNA expression in normal human tissues for SNHG10 Gene

SOURCE GeneReport for Unigene cluster for SNHG10 Gene Hs.448753

genes like me logo Genes that share expressions with SNHG10: view

Orthologs for SNHG10 Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for SNHG10 Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
Mammalia Snhg10 16
Species with no ortholog for SNHG10:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SNHG10 Gene

ENSEMBL:
Gene Tree for SNHG10 (if available)
TreeFam:
Gene Tree for SNHG10 (if available)

Paralogs for SNHG10 Gene

No data available for Paralogs for SNHG10 Gene

Variants for SNHG10 Gene

Sequence variations from dbSNP and Humsavar for SNHG10 Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type MAF
rs986555 -- 95,532,429(+) GAAAG(A/G)TGGAA downstream-variant-500B
rs61743200 -- 95,532,847(+) TTTGG(C/G)AACAA downstream-variant-500B
rs114402549 -- 95,532,817(+) TTAAG(G/T)TGACA downstream-variant-500B
rs138621313 -- 95,532,549(+) ATCTT(A/C)CACAA downstream-variant-500B
rs145097365 -- 95,532,469(+) AGTTC(A/G)CAAGC downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for SNHG10 Gene

Variant ID Type Subtype PubMed ID
dgv89e55 CNV Gain 17911159

Relevant External Links for SNHG10 Gene

HapMap Linkage Disequilibrium report
SNHG10

Disorders for SNHG10 Gene

No disorders were found for SNHG10 Gene.

No data available for UniProtKB/Swiss-Prot for SNHG10 Gene

Publications for SNHG10 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3
  3. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3

Products for SNHG10 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate SNHG10
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for SNHG10
    • Block miRNA regulation of SNHG10 using miScript Target Protectors

    Sources for SNHG10 Gene

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