Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SNHG10 Gene

Subcategory (RNA class) for SNHG10 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SNHG10 Gene

  • Small Nucleolar RNA Host Gene 10 2 3 5
  • Small Nucleolar RNA Host Gene 10 (Non-Protein Coding) 2 3
  • Long Intergenic Non-Protein Coding RNA 63 2 3
  • Chromosome 14 Open Reading Frame 62 2
  • Non-Protein Coding RNA 63 2
  • NCRNA00063 3
  • LINC00063 3
  • C14orf62 3

External Ids for SNHG10 Gene

Previous HGNC Symbols for SNHG10 Gene

  • C14orf62

Previous GeneCards Identifiers for SNHG10 Gene

  • GC14U900667
  • GC14M095073
  • GC14M096000
  • GC14M076184
  • GC14M096001
  • GC14M096003
  • GC14M096005

Summaries for SNHG10 Gene

Entrez Gene Summary for SNHG10 Gene

  • This gene is small nucleolar RNA host gene 10 and represents a non-protein coding RNA. Alternatively spliced transcript variants have been found for this gene. [provided by RefSeq, Jan 2013]

GeneCards Summary for SNHG10 Gene

SNHG10 (Small Nucleolar RNA Host Gene 10) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNHG10 Gene

Genomics for SNHG10 Gene

Regulatory Elements for SNHG10 Gene

Enhancers for SNHG10 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH14F095258 1.7 FANTOM5 Ensembl ENCODE 46 +271.5 271518 9.1 HDGF PKNOX1 WRNIP1 ARID4B SIN3A FOS DEK JUNB MXD4 REST SNHG10 CLMN SCARNA13 ENSG00000258866 ENSG00000258516 ENSG00000258927 DICER1 ENSG00000258615
GH14F095254 1.1 Ensembl ENCODE 31.4 +279.5 279457 2.8 ZFP64 INSM2 KLF17 FEZF1 GLIS2 EGR1 CBX5 ZNF366 SCRT2 ETV6 SNHG10 CLMN SCARNA13 ENSG00000258615
GH14F096224 0.9 Ensembl ENCODE 23.5 -690.4 -690418 2.5 CTCF KLF1 STAT1 HLF ZNF140 MNT RAD21 SMC3 EGR2 SNHG10 SCARNA13 ATG2B GC14P096224 ENSG00000259036
GH14F094597 1.7 FANTOM5 Ensembl ENCODE 11.9 +934.7 934669 6.1 MLX ZFP64 ARID4B SIN3A DMAP1 YBX1 YY1 SLC30A9 ZNF143 ZNF207 SERPINA10 SERPINA3 SERPINA1 SERPINA5 SERPINA6 SERPINA11 SCARNA13 SNHG10 SERPINA4 SERPINA9
GH14F095543 1.5 FANTOM5 Ensembl ENCODE 13.4 -11.4 -11415 5.4 ATF1 ARID4B ZNF48 YY1 GATA2 FOS JUNB TSHZ1 ZNF518A SREBF1 GLRX5 SNHG10 LOC101929107 TCL6 GC14M095530 LOC100506999
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNHG10 on UCSC Golden Path with GeneCards custom track

Promoters for SNHG10 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001460013 272 3201 PKNOX1 CREB3L1 WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 FOS

Genomic Location for SNHG10 Gene

Chromosome:
14
Start:
95,532,297 bp from pter
End:
95,534,872 bp from pter
Size:
2,576 bases
Orientation:
Minus strand

Genomic View for SNHG10 Gene

Genes around SNHG10 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNHG10 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNHG10 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNHG10 Gene

Proteins for SNHG10 Gene

Post-translational modifications for SNHG10 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNHG10 Gene

Domains & Families for SNHG10 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNHG10 Gene

Function for SNHG10 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNHG10 Gene

Localization for SNHG10 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNHG10 Gene

Pathways & Interactions for SNHG10 Gene

SuperPathways for SNHG10 Gene

No Data Available

Interacting Proteins for SNHG10 Gene

Gene Ontology (GO) - Biological Process for SNHG10 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNHG10 Gene

Transcripts for SNHG10 Gene

mRNA/cDNA for SNHG10 Gene

(5) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNHG10 Gene

Small nucleolar RNA host gene 10 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SNHG10 Gene

No ASD Table

Relevant External Links for SNHG10 Gene

GeneLoc Exon Structure for
SNHG10
ECgene alternative splicing isoforms for
SNHG10

Expression for SNHG10 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SNHG10 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNHG10 Gene:

SNHG10

SOURCE GeneReport for Unigene cluster for SNHG10 Gene:

Hs.448753
genes like me logo Genes that share expression patterns with SNHG10: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNHG10 Gene

Orthologs for SNHG10 Gene

Evolution for SNHG10 Gene

ENSEMBL:
Gene Tree for SNHG10 (if available)
TreeFam:
Gene Tree for SNHG10 (if available)

No data available for Orthologs for SNHG10 Gene

Paralogs for SNHG10 Gene

No data available for Paralogs for SNHG10 Gene

Variants for SNHG10 Gene

Sequence variations from dbSNP and Humsavar for SNHG10 Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type
rs121908584 Pathogenic 95,535,383(+) CGACA(A/G)GGTCA upstream-variant-2KB, reference, synonymous-codon
rs869320757 Pathogenic 95,535,240(+) TGAAG(-/AAG)GACAA upstream-variant-2KB, cds-indel
rs869320758 Pathogenic 95,535,182(+) GGGCG(-/TGCGGGCG)GCGGG upstream-variant-2KB, reference, frameshift-variant
rs587776500 untested 95,535,218(+) GCGGA(C/G)CAGTT upstream-variant-2KB, reference, missense
rs10135660 -- 95,534,507(+) GGGGA(C/G)GCTCA nc-transcript-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNHG10 Gene

Variant ID Type Subtype PubMed ID
dgv89e55 CNV gain 17911159
esv3635400 CNV gain 21293372
nsv1042858 CNV gain 25217958
nsv565631 CNV gain 21841781

Relevant External Links for SNHG10 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNHG10

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNHG10 Gene

Disorders for SNHG10 Gene

Relevant External Links for SNHG10

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNHG10

No disorders were found for SNHG10 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNHG10 Gene

Publications for SNHG10 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  3. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo M.F. … Soares M.B. (Genome Res. 1996) 3 64

Products for SNHG10 Gene

Sources for SNHG10 Gene

Content
Loading form....