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Aliases for SNHG1 Gene

Subcategory (RNA class) for SNHG1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for SNHG1 Gene

  • Small Nucleolar RNA Host Gene 1 2 3 5
  • Small Nucleolar RNA Host Gene 1 (Non-Protein Coding) 2 3
  • Long Intergenic Non-Protein Coding RNA 57 2 3
  • Non-Protein Coding RNA 57 2
  • U22 SnoRNA Host Gene 2
  • U22 SnoRNA Host 3
  • NCRNA00057 3
  • LINC00057 3
  • U22HG 3
  • UHG 3

External Ids for SNHG1 Gene

Previous GeneCards Identifiers for SNHG1 Gene

  • GC11U900889
  • GC11M062409
  • GC11M062419
  • GC11M062428
  • GC11M062619
  • GC11M062852
  • GC11M062862
  • GC11M062863

Summaries for SNHG1 Gene

GeneCards Summary for SNHG1 Gene

SNHG1 (Small Nucleolar RNA Host Gene 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNHG1 Gene

Genomics for SNHG1 Gene

Regulatory Elements for SNHG1 Gene

Enhancers for SNHG1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
- Elite enhancer/Elite enhancer-gene association

Enhancers around SNHG1 on UCSC Golden Path with GeneCards custom track

Promoters for SNHG1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

Genomic Location for SNHG1 Gene

62,851,988 bp from pter
62,855,914 bp from pter
3,927 bases
Minus strand

Genomic View for SNHG1 Gene

Genes around SNHG1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNHG1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNHG1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNHG1 Gene

Proteins for SNHG1 Gene

Post-translational modifications for SNHG1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNHG1 Gene

Domains & Families for SNHG1 Gene

Gene Families for SNHG1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNHG1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNHG1 Gene

Function for SNHG1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNHG1 Gene

Localization for SNHG1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNHG1 Gene

Pathways & Interactions for SNHG1 Gene

SuperPathways for SNHG1 Gene

No Data Available

Interacting Proteins for SNHG1 Gene

Gene Ontology (GO) - Biological Process for SNHG1 Gene


No data available for Pathways by source and SIGNOR curated interactions for SNHG1 Gene

Drugs & Compounds for SNHG1 Gene

No Compound Related Data Available

Transcripts for SNHG1 Gene

mRNA/cDNA for SNHG1 Gene

(1) Additional mRNA sequences :
(25) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNHG1 Gene

Small nucleolar RNA host gene 1 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SNHG1 Gene

No ASD Table

Relevant External Links for SNHG1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SNHG1 Gene

mRNA expression in normal human tissues for SNHG1 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNHG1 Gene:


SOURCE GeneReport for Unigene cluster for SNHG1 Gene:

genes like me logo Genes that share expression patterns with SNHG1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNHG1 Gene

Orthologs for SNHG1 Gene

Evolution for SNHG1 Gene

Gene Tree for SNHG1 (if available)
Gene Tree for SNHG1 (if available)

No data available for Orthologs for SNHG1 Gene

Paralogs for SNHG1 Gene

No data available for Paralogs for SNHG1 Gene

Variants for SNHG1 Gene

Sequence variations from dbSNP and Humsavar for SNHG1 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs1059335 -- 62,852,200(-) TAACT(C/T)CACTT nc-transcript-variant
rs77046380 -- 62,852,102(+) AGCTA(A/C)CTACA nc-transcript-variant
rs4034 -- 62,852,157(+) ATGAC(A/G)GGAAC nc-transcript-variant
rs2510083 -- 62,851,631(+) tccag(C/T)ttgAC downstream-variant-500B
rs498751 -- 62,851,734(+) GGTTT(A/G)CTTAA downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for SNHG1 Gene

Variant ID Type Subtype PubMed ID
nsv1159903 CNV duplication 26073780
nsv508636 CNV deletion 20534489
nsv509416 CNV insertion 20534489

Relevant External Links for SNHG1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNHG1 Gene

Disorders for SNHG1 Gene

Relevant External Links for SNHG1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for SNHG1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNHG1 Gene

Publications for SNHG1 Gene

  1. The Use of Three Long Non-Coding RNAs as Potential Prognostic Indicators of Astrocytoma. (PMID: 26252651) Zhi F. … Yang Y. (PLoS ONE 2015) 2 3 65
  2. Analysis of long non-coding RNA expression profiles in gastric cancer. (PMID: 23801869) Cao W.J. … Zhang Z.Y. (World J. Gastroenterol. 2013) 2 3 65
  3. A mammalian gene with introns instead of exons generating stable RNA products. (PMID: 8559254) Tycowski K.T. … Steitz J.A. (Nature 1996) 2 3 65
  4. p53 Represses the Oncogenic Sno-MiR-28 Derived from a SnoRNA. (PMID: 26061048) Yu F. … Neilsen P.M. (PLoS ONE 2015) 3 65
  5. Noncoding RNA small nucleolar RNA host gene 1 promote cell proliferation in nonsmall cell lung cancer. (PMID: 25818744) You J. … Zhou Q. (Indian J Cancer 2014) 3 65

Products for SNHG1 Gene

Sources for SNHG1 Gene

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