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Aliases for SNHG1 Gene

Subcategory (RNA class) for SNHG1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SNHG1 Gene

  • Small Nucleolar RNA Host Gene 1 2 3 5
  • Small Nucleolar RNA Host Gene 1 (Non-Protein Coding) 2 3
  • Long Intergenic Non-Protein Coding RNA 57 2 3
  • Non-Protein Coding RNA 57 2
  • U22 SnoRNA Host Gene 2
  • U22 SnoRNA Host 3
  • NCRNA00057 3
  • LINC00057 3
  • LncRNA16 3
  • U22HG 3
  • UHG 3

External Ids for SNHG1 Gene

Previous GeneCards Identifiers for SNHG1 Gene

  • GC11U900889
  • GC11M062409
  • GC11M062419
  • GC11M062428
  • GC11M062619
  • GC11M062852
  • GC11M062862
  • GC11M062863
  • GC11M062869
  • GC11M062877

Summaries for SNHG1 Gene

GeneCards Summary for SNHG1 Gene

SNHG1 (Small Nucleolar RNA Host Gene 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNHG1 Gene

Genomics for SNHG1 Gene

Regulatory Elements for SNHG1 Gene

Enhancers for SNHG1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11G062041 1.4 ENCODE dbSUPER 53.7 +810.5 810487 8.1 CREB3L1 MLX AGO1 ZFP64 DMAP1 FEZF1 YY1 ZNF143 SP3 NFYC METTL12 INTS5 SNHG1 NXF1 TMEM138 MTA2 STX5 LOC105369332 TAF6L VPS37C
GH11G062830 1.4 ENCODE dbSUPER 34.6 +23.5 23463 4.6 CREB3L1 AGO1 DMAP1 YBX1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC SNHG1 METTL12 NXF1 TAF6L UBXN1 INTS5 IMMP1LP1 LOC105369332 STX5 MTA2
GH11G062852 1.8 FANTOM5 ENCODE dbSUPER 25.3 +0.1 77 5.9 CREB3L1 MLX AGO1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 SP3 SNHG1 MTA2 EML3 STX5 NXF1 TMEM179B INTS5 METTL12 LOC105369332 TTC9C
GH11G062878 1.4 ENCODE dbSUPER 31.8 -25.9 -25919 5.9 CREB3L1 AGO1 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC TBX21 MEF2D SNHG1 TAF6L INTS5 METTL12 NXF1 MTA2 LOC105369332 STX5 SLC3A2 SNORD28
GH11G062838 1.5 ENCODE dbSUPER 23.6 +15.1 15069 4.8 MLX CREB3L1 AGO1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 UBXN1 METTL12 TAF6L SNHG1 NXF1 INTS5 LRRN4CL MTA2 B3GAT3 EML3
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNHG1 on UCSC Golden Path with GeneCards custom track

Promoters for SNHG1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000040484 88 2801 CREB3L1 MLX AGO1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 SP3

Genomic Location for SNHG1 Gene

Chromosome:
11
Start:
62,851,988 bp from pter
End:
62,855,914 bp from pter
Size:
3,927 bases
Orientation:
Minus strand

Genomic View for SNHG1 Gene

Genes around SNHG1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNHG1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNHG1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNHG1 Gene

Proteins for SNHG1 Gene

Post-translational modifications for SNHG1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNHG1 Gene

Domains & Families for SNHG1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNHG1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNHG1 Gene

Function for SNHG1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNHG1 Gene

Localization for SNHG1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SNHG1 gene
Compartment Confidence
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for SNHG1 Gene

Pathways & Interactions for SNHG1 Gene

SuperPathways for SNHG1 Gene

No Data Available

Interacting Proteins for SNHG1 Gene

Gene Ontology (GO) - Biological Process for SNHG1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNHG1 Gene

Drugs & Compounds for SNHG1 Gene

No Compound Related Data Available

Transcripts for SNHG1 Gene

mRNA/cDNA for SNHG1 Gene

(1) Additional mRNA sequences :
(25) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNHG1 Gene

Small nucleolar RNA host gene 1 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SNHG1 Gene

No ASD Table

Relevant External Links for SNHG1 Gene

GeneLoc Exon Structure for
SNHG1
ECgene alternative splicing isoforms for
SNHG1

Expression for SNHG1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNHG1 Gene

NURSA nuclear receptor signaling pathways regulating expression of SNHG1 Gene:

SNHG1

SOURCE GeneReport for Unigene cluster for SNHG1 Gene:

Hs.655643

Evidence on tissue expression from TISSUES for SNHG1 Gene

  • Urine(2.6)
genes like me logo Genes that share expression patterns with SNHG1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNHG1 Gene

Orthologs for SNHG1 Gene

Evolution for SNHG1 Gene

ENSEMBL:
Gene Tree for SNHG1 (if available)
TreeFam:
Gene Tree for SNHG1 (if available)

No data available for Orthologs for SNHG1 Gene

Paralogs for SNHG1 Gene

No data available for Paralogs for SNHG1 Gene

Variants for SNHG1 Gene

Sequence variations from dbSNP and Humsavar for SNHG1 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs1000055291 -- 62,855,272(+) TGACA(G/T)TTGTT intron-variant, downstream-variant-500B, upstream-variant-2KB
rs1000661059 -- 62,855,896(+) ATCTC(C/T)CCGGG upstream-variant-2KB
rs1000988950 -- 62,855,843(+) AGCTA(C/T)AAAGA intron-variant, upstream-variant-2KB
rs1001419761 -- 62,855,320(+) TCCAC(C/T)AATCC intron-variant, nc-transcript-variant, downstream-variant-500B, upstream-variant-2KB
rs1002424048 -- 62,855,938(+) ACGGG(A/C)TTTGG upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNHG1 Gene

Variant ID Type Subtype PubMed ID
nsv1159903 CNV duplication 26073780
nsv508636 CNV deletion 20534489
nsv509416 CNV insertion 20534489

Relevant External Links for SNHG1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNHG1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNHG1 Gene

Disorders for SNHG1 Gene

Relevant External Links for SNHG1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNHG1

No disorders were found for SNHG1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNHG1 Gene

Publications for SNHG1 Gene

  1. LncRNA16 is a potential biomarker for diagnosis of early-stage lung cancer that promotes cell proliferation by regulating the cell cycle. (PMID: 27999202) Zhu H. … Wu N. (Oncotarget 2017) 2 3 64
  2. The Use of Three Long Non-Coding RNAs as Potential Prognostic Indicators of Astrocytoma. (PMID: 26252651) Zhi F. … Yang Y. (PLoS ONE 2015) 2 3 64
  3. Analysis of long non-coding RNA expression profiles in gastric cancer. (PMID: 23801869) Cao W.J. … Zhang Z.Y. (World J. Gastroenterol. 2013) 2 3 64
  4. A mammalian gene with introns instead of exons generating stable RNA products. (PMID: 8559254) Tycowski K.T. … Steitz J.A. (Nature 1996) 2 3 64
  5. Expression of Long Non-Coding RNA (lncRNA) Small Nucleolar RNA Host Gene 1 (SNHG1) Exacerbates Hepatocellular Carcinoma Through Suppressing miR-195. (PMID: 27932778) Zhang H. … Zhang F. (Med. Sci. Monit. 2016) 3 64

Products for SNHG1 Gene

Sources for SNHG1 Gene

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