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Aliases for SNHG1 Gene

Subcategory (RNA class) for SNHG1 Gene


Quality Score for this RNA gene is


Aliases for SNHG1 Gene

  • Small Nucleolar RNA Host Gene 1 2 3
  • Small Nucleolar RNA Host Gene 1 (Non-Protein Coding) 2 3
  • Long Intergenic Non-Protein Coding RNA 57 2 3
  • U22HG 3 6
  • UHG 3 6
  • Non-Protein Coding RNA 57 2
  • U22 SnoRNA Host Gene 2
  • U22 SnoRNA Host 3
  • NCRNA00057 3
  • LINC00057 3

External Ids for SNHG1 Gene

Previous GeneCards Identifiers for SNHG1 Gene

  • GC11U900889
  • GC11M062409
  • GC11M062419
  • GC11M062428
  • GC11M062619

Summaries for SNHG1 Gene

GeneCards Summary for SNHG1 Gene

SNHG1 (Small Nucleolar RNA Host Gene 1) is an RNA Gene, and is affiliated with the lncRNA class.

fRNAdb sequence ontologies for SNHG1 Gene

  • ncRNA: An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for SNHG1 Gene

Genomics for SNHG1 Gene

Regulatory Elements for SNHG1 Gene

Genomic Location for SNHG1 Gene

62,851,988 bp from pter
62,855,914 bp from pter
3,927 bases
Minus strand

Genomic View for SNHG1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNHG1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNHG1 Gene

Proteins for SNHG1 Gene

Post-translational modifications for SNHG1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNHG1 Gene

Domains for SNHG1 Gene

Gene Families for SNHG1 Gene

  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNHG1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNHG1 Gene

Function for SNHG1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNHG1 Gene

Localization for SNHG1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNHG1 Gene

Pathways for SNHG1 Gene

SuperPathways for SNHG1 Gene

No Data Available

Interacting Proteins for SNHG1 Gene

Gene Ontology (GO) - Biological Process for SNHG1 Gene


No data available for Pathways by source for SNHG1 Gene

Transcripts for SNHG1 Gene

mRNA/cDNA for SNHG1 Gene

(1) Additional mRNA sequences :
(28) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNHG1 Gene

Small nucleolar RNA host gene 1 (non-protein coding):
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for SNHG1

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNHG1 Gene

No ASD Table

Relevant External Links for SNHG1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SNHG1 Gene

mRNA expression in normal human tissues for SNHG1 Gene

SOURCE GeneReport for Unigene cluster for SNHG1 Gene Hs.655643

genes like me logo Genes that share expressions with SNHG1: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for SNHG1 Gene

Orthologs for SNHG1 Gene

Evolution for SNHG1 Gene

Gene Tree for SNHG1 (if available)
Gene Tree for SNHG1 (if available)

No data available for Orthologs for SNHG1 Gene

Paralogs for SNHG1 Gene

No data available for Paralogs for SNHG1 Gene

Variants for SNHG1 Gene

Sequence variations from dbSNP and Humsavar for SNHG1 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type MAF
rs4034 -- 62,852,157(+) ATGAC(A/G)GGAAC nc-transcript-variant
rs498751 -- 62,851,734(+) GGTTT(A/G)CTTAA downstream-variant-500B
rs503214 -- 62,852,198(+) CGAAG(G/T)GGAGT nc-transcript-variant
rs524891 -- 62,851,528(+) tgctt(C/G)gtgac downstream-variant-500B
rs1059335 -- 62,852,200(-) TAACT(C/T)CACTT nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for SNHG1 Gene

Variant ID Type Subtype PubMed ID
nsv483055 CNV Loss 15286789
nsv508636 CNV Loss 20534489
nsv509416 CNV Insertion 20534489

Relevant External Links for SNHG1 Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SNHG1 Gene

Disorders for SNHG1 Gene

No disorders were found for SNHG1 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for SNHG1 Gene

Publications for SNHG1 Gene

  1. Analysis of long non-coding RNA expression profiles in gastric cancer. (PMID: 23801869) Cao W.J. … Zhang Z.Y. (World J. Gastroenterol. 2013) 2 3
  2. A mammalian gene with introns instead of exons generating stable RNA products. (PMID: 8559254) Tycowski K.T. … Steitz J.A. (Nature 1996) 2 3
  3. The U22 host gene (UHG): chromosomal localization of UHG and distribution of U22 small nucleolar RNA. (PMID: 9387929) Frey M.R. … Matera A.G. (Histochem. Cell Biol. 1997) 3
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3

Products for SNHG1 Gene

Sources for SNHG1 Gene

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