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Aliases for SND1-IT1 Gene

Subcategory (RNA class) for SND1-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SND1-IT1 Gene

  • SND1 Intronic Transcript 1 2 3 4
  • SND1 Intronic Transcript 1 (Non-Protein Coding) 2 3
  • C7orf54 3 4
  • NAG8 3 4
  • Brain And Nasopharyngeal Carcinoma Susceptibility Protein NSG-X 4
  • Nasopharyngeal Carcinoma Associated Gene Protein-8 2
  • Nasopharyngeal Carcinoma-Associated Gene 8 Protein 4
  • Brain And Nasopharyngeal Carcinoma Susceptibility 3
  • Nasopharyngeal Carcinoma Associated Gene 8 3
  • Chromosome 7 Open Reading Frame 54 2
  • NSG-X 3

External Ids for SND1-IT1 Gene

Previous Symbols for SND1-IT1 Gene

  • C7orf54

Summaries for SND1-IT1 Gene

GeneCards Summary for SND1-IT1 Gene

SND1-IT1 (SND1 Intronic Transcript 1) is a RNA Gene, and belongs to non-coding RNA RNA class. Diseases associated with SND1-IT1 include nasopharyngeal carcinoma.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SND1-IT1 Gene

Genomics for SND1-IT1 Gene

Genomic Location for SND1-IT1 Gene

Start:
127,997,509 bp from pter
End:
128,000,077 bp from pter
Size:
2,569 bases
Orientation:
Plus strand

Genomic View for SND1-IT1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SND1-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SND1-IT1 Gene

No data available for Regulatory Elements for SND1-IT1 Gene

Proteins for SND1-IT1 Gene

  • Protein details for SND1-IT1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9HBX3-SNIT1_HUMAN
    Recommended name:
    Uncharacterized protein encoded by SND1-IT1
    Protein Accession:
    Q9HBX3
    Secondary Accessions:
    • B3KNA6
    • O95358

    Protein attributes for SND1-IT1 Gene

    Size:
    110 amino acids
    Molecular mass:
    12922 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SND1-IT1 Gene

Proteomics data for SND1-IT1 Gene at MOPED

Post-translational modifications for SND1-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SND1-IT1 Gene

Domains for SND1-IT1 Gene

Gene Families for SND1-IT1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Protein Domains for SND1-IT1 Gene

ProtoNet:
genes like me logo Genes that share domains with SND1-IT1: view

No data available for UniProtKB/Swiss-Prot for SND1-IT1 Gene

Function for SND1-IT1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SND1-IT1 Gene

Localization for SND1-IT1 Gene

No data available for Gene Ontology (GO) - Cellular Components for SND1-IT1 Gene

Pathways for SND1-IT1 Gene

SuperPathways for SND1-IT1 Gene

No Data Available

Interacting Proteins for SND1-IT1 Gene

Gene Ontology (GO) - Biological Process for SND1-IT1 Gene

None

No data available for Pathways by source for SND1-IT1 Gene

Transcripts for SND1-IT1 Gene

mRNA/cDNA for SND1-IT1 Gene

(1) REFSEQ mRNAs :
(6) Additional mRNA sequences :
(769) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SND1-IT1 Gene

SND1 intronic transcript 1 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SND1-IT1 Gene

No ASD Table

Relevant External Links for SND1-IT1 Gene

GeneLoc Exon Structure for
SND1-IT1
ECgene alternative splicing isoforms for
SND1-IT1

Expression for SND1-IT1 Gene

mRNA expression in normal human tissues for SND1-IT1 Gene

SOURCE GeneReport for Unigene cluster for SND1-IT1 Gene Hs.657377

genes like me logo Genes that share expressions with SND1-IT1: view

Orthologs for SND1-IT1 Gene

Evolution for SND1-IT1 Gene

ENSEMBL:
Gene Tree for SND1-IT1 (if available)
TreeFam:
Gene Tree for SND1-IT1 (if available)

No data available for Orthologs for SND1-IT1 Gene

Paralogs for SND1-IT1 Gene

No data available for Paralogs for SND1-IT1 Gene

Variants for SND1-IT1 Gene

Sequence variations from dbSNP and Humsavar for SND1-IT1 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type MAF
VAR_050818 -

Relevant External Links for SND1-IT1 Gene

HapMap Linkage Disequilibrium report
SND1-IT1

No data available for Structural Variations from Database of Genomic Variants (DGV) for SND1-IT1 Gene

Disorders for SND1-IT1 Gene

(1) MalaCards Diseases for SND1-IT1 Gene

Search for SND1-IT1 Gene in MalaCards »
genes like me logo Genes that share disorders with SND1-IT1: view

No data available for UniProtKB/Swiss-Prot for SND1-IT1 Gene

Publications for SND1-IT1 Gene

  1. Human chromosome 7: DNA sequence and biology. (PMID: 12690205) Scherer S.W. … Tsui L.-C. (Science 2003) 3 4
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for SND1-IT1 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate SND1-IT1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for SND1-IT1
    • Block miRNA regulation of SND1-IT1 using miScript Target Protectors

    Sources for SND1-IT1 Gene

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