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Aliases for SND1-IT1 Gene

Subcategory (RNA class) for SND1-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for SND1-IT1 Gene

  • SND1 Intronic Transcript 1 2 3 4 5
  • SND1 Intronic Transcript 1 (Non-Protein Coding) 2 3
  • C7orf54 3 4
  • NAG8 3 4
  • Brain And Nasopharyngeal Carcinoma Susceptibility Protein NSG-X 4
  • Nasopharyngeal Carcinoma Associated Gene Protein-8 2
  • Nasopharyngeal Carcinoma-Associated Gene 8 Protein 4
  • Brain And Nasopharyngeal Carcinoma Susceptibility 3
  • Nasopharyngeal Carcinoma Associated Gene 8 3
  • Chromosome 7 Open Reading Frame 54 2
  • NSG-X 3

External Ids for SND1-IT1 Gene

Previous HGNC Symbols for SND1-IT1 Gene

  • C7orf54

Previous GeneCards Identifiers for SND1-IT1 Gene

  • GC07P127639

Summaries for SND1-IT1 Gene

GeneCards Summary for SND1-IT1 Gene

SND1-IT1 (SND1 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SND1-IT1 Gene

Genomics for SND1-IT1 Gene

Regulatory Elements for SND1-IT1 Gene

Enhancers for SND1-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07F127994 1.1 Ensembl ENCODE 0.8 -1.7 -1671 1.8 PKNOX1 ZEB1 ZNF335 FOS EGR2 YY2 REST TBX21 SMARCB1 RAD51 LRRC4 ENSG00000272601 SND1 RBM28 ENSG00000224138 SND1-IT1 GC07P127895
GH07F128000 0.8 Ensembl ENCODE 0.8 +3.5 3460 1.1 MTA2 IKZF1 NBN CEBPB JUNB IRF1 LRRC4 SND1 SND1-IT1 LOC105375492
GH07F127997 0.6 ENCODE 0.8 +0.1 78 0.9 TEAD1 ADNP THRAP3 TEAD4 NR2F6 TEAD3 SND1 ENSG00000242588 ZNF800 ENSG00000243302 ENSG00000224138 ENSG00000230715 RN7SL81P ENSG00000243679 SND1-IT1 LOC105375492
GH07F127996 0.6 ENCODE 0.8 -0.7 -667 0.2 ARID1B TAL1 NRF1 IKZF1 SMARCB1 LRRC4 SND1 SND1-IT1 GC07P127895
GH07F128002 1.1 Ensembl ENCODE 0.4 +7.1 7143 3.7 ELF3 SOX13 TFAP4 PKNOX1 TAL1 RAD21 RARA TEAD3 YY1 NCOR1 SND1 LRRC4 ENSG00000242588 LOC105375492 SND1-IT1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SND1-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Location for SND1-IT1 Gene

127,997,509 bp from pter
128,000,077 bp from pter
2,569 bases
Plus strand

Genomic View for SND1-IT1 Gene

Genes around SND1-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SND1-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SND1-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SND1-IT1 Gene

Proteins for SND1-IT1 Gene

  • Protein details for SND1-IT1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Uncharacterized protein encoded by SND1-IT1
    Protein Accession:
    Secondary Accessions:
    • B3KNA6
    • O95358

    Protein attributes for SND1-IT1 Gene

    110 amino acids
    Molecular mass:
    12922 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SND1-IT1 Gene

Post-translational modifications for SND1-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SND1-IT1 Gene

Domains & Families for SND1-IT1 Gene

Protein Domains for SND1-IT1 Gene


Suggested Antigen Peptide Sequences for SND1-IT1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SND1-IT1: view

No data available for Gene Families and UniProtKB/Swiss-Prot for SND1-IT1 Gene

Function for SND1-IT1 Gene

Phenotypes for SND1-IT1 Gene

genes like me logo Genes that share phenotypes with SND1-IT1: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SND1-IT1 Gene

Localization for SND1-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SND1-IT1 Gene

Pathways & Interactions for SND1-IT1 Gene

SuperPathways for SND1-IT1 Gene

No Data Available

Interacting Proteins for SND1-IT1 Gene

Gene Ontology (GO) - Biological Process for SND1-IT1 Gene


No data available for Pathways by source and SIGNOR curated interactions for SND1-IT1 Gene

Transcripts for SND1-IT1 Gene

mRNA/cDNA for SND1-IT1 Gene

(1) REFSEQ mRNAs :
(6) Additional mRNA sequences :
(769) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SND1-IT1 Gene

SND1 intronic transcript 1 (non-protein coding):
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for SND1-IT1 Gene

No ASD Table

Relevant External Links for SND1-IT1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SND1-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SND1-IT1 Gene

SOURCE GeneReport for Unigene cluster for SND1-IT1 Gene:

genes like me logo Genes that share expression patterns with SND1-IT1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SND1-IT1 Gene

Orthologs for SND1-IT1 Gene

Evolution for SND1-IT1 Gene

Gene Tree for SND1-IT1 (if available)
Gene Tree for SND1-IT1 (if available)

No data available for Orthologs for SND1-IT1 Gene

Paralogs for SND1-IT1 Gene

No data available for Paralogs for SND1-IT1 Gene

Variants for SND1-IT1 Gene

Sequence variations from dbSNP and Humsavar for SND1-IT1 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs10279707 -- 128,000,388(+) tttga(A/G)acagg intron-variant, downstream-variant-500B
rs112226382 -- 127,998,192(+) TTATG(G/T)TTCTT intron-variant, nc-transcript-variant
rs115352542 -- 127,997,001(+) ATAGC(A/G)ATCAA intron-variant, upstream-variant-2KB
rs115567204 -- 127,999,102(+) TGTAG(A/G)TTTGG intron-variant, nc-transcript-variant
rs116987521 -- 127,995,921(+) CCCCT(C/T)TGTCC intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SND1-IT1 Gene

Variant ID Type Subtype PubMed ID
nsv1024743 CNV gain 25217958

Relevant External Links for SND1-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SND1-IT1 Gene

Disorders for SND1-IT1 Gene

Relevant External Links for SND1-IT1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for SND1-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SND1-IT1 Gene

Publications for SND1-IT1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  2. Human chromosome 7: DNA sequence and biology. (PMID: 12690205) Scherer S.W. … Tsui L.-C. (Science 2003) 3 4 64
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4 64
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for SND1-IT1 Gene

Sources for SND1-IT1 Gene

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