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Aliases & Descriptions for SNCG
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| BCSG1 1, 2, 3, 5 | | OTTHUMP00000020013 2 | | PERSYN 3 | | PRSN 3 | | Persyn 3 | | SR 1, 2, 3 | | Synoretin 3 | | persyn 1, 2 | | synoretin 2 |
| | | Descriptions |
|---|
| Breast cancer-specific gene 1 protein 3 | | breast cancer-specific protein 1 2 | | synuclein, gamma (breast cancer-specific gene 1) 2 | | synuclein, gamma (breast cancer-specific protein 1) 2 |
|
| | Search outside databases for aliases for SNCG genePrevious GC identifers: GC10P087599 GC10P087941 GC10P088849 GC10P088382 |
Summaries for SNCG(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for SNCG: Summary: This gene encodes a member of the synuclein family of proteins which are believed to be involved in the pathogenesis of neurodegenerative diseases. Mutations in this gene have also been associated with breast tumor development. [provided by RefSeq] UniProtKB/Swiss-Prot: SYUG_HUMAN, O76070Function: Plays a role in neurofilament network integrity. May be involved in modulating axonal architecture during development and in the adult. In vitro, increases the susceptibility of neurofilament-H to calcium-dependent proteases (By similarity). May also function in modulating the keratin network in skin. Activates the MAPK and Elk-1 signal transduction pathway (By similarity)Gene Wiki entry for SNCG (Gamma-synuclein) |
Genomic Location for SNCG
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the SNCG gene 
Entrez Gene cytogenetic band: 10q23.2-q23.3 Ensembl cytogenetic band: 10q23.2 HGNC cytogenetic band: 10q23.2-q23.3SNCG Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 10 GeneLoc Exon Structure GeneLoc location for GC10P088708:
(about GC identifiers)
Start:
|
88,708,351 bp from pter |
End:
|
88,712,995 bp from pter |
Size:
|
4,645 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000010.9 NT_030059.12
| Proteins for SNCG
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: SYUG_HUMAN, O76070 (See
protein sequence)Recommended Name: Gamma-synuclein Size: 127 amino acids; 13331 Da
Subunit: May be a centrosome-associated protein
Subcellular location: Cytoplasm, perinuclear region. Centrosome. Spindle. Note=Associated with centrosomes in several interphase cells. In mitotic cells, localized to the poles of the spindle
Secondary accessions: O15104 Q96P61Post-translational modifications:
Phosphorylated. Phosphorylation by GRK5 appears to occur on residues distinct from the residue phosphorylated by other kinases1
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_003078.2
ENSEMBL proteins: ENSP00000344658 ENSP00000361087
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
3 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for SNCG: Assays for SNCG: | Protein
Domains/ Families for SNCG(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry O76070
ProtoNet protein and cluster: O76070 1 Blocks protein family: IPB001058 Synuclein signature
UniProtKB/Swiss-Prot: SYUG_HUMAN, O76070Similarity: Belongs to the synuclein family | Gene Function for SNCG
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_003087
Applied Biosystems Silencer® siRNAs for SNCG
Sigma-Aldrich siRNA and siRNA Panels for SNCG  Sigma-Aldrich shRNA for SNCG  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_003087                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_003087                                  untagged cDNA clone in CMV expression vector: NM_003087 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_003087
UniProtKB/Swiss-Prot: SYUG_HUMAN, O76070Function: Plays a role in neurofilament network integrity. May be involved in modulating axonal architecture during development and in the adult. In vitro, increases the susceptibility of neurofilament-H to calcium-dependent proteases (By similarity). May also function in modulating the keratin network in skin. Activates the MAPK and Elk-1 signal transduction pathway (By similarity)Genatlas biochemistry entry for SNCG:gamma synuclein,expressed during pre and postnatal development in the cell bodies and axons of primary sensory neurons,sympathetic neurons and motoneurons of peripheral and central nervous system,predominantly expressed in substantia nigra,maybe involved in exocytosis of synaptic vesicles,putatively involved in the pathogenesis of neurodegenerative diseases (but not found in amyotrophic lateral sclerosis or familial Parkinson) and overexpressed in breast tumors1 MGI mutant phenotype (inferred from 1 allele ) (MGI details for Sncg):
1 Gene Ontology (GO) molecular function term (links to tree view): About this table | Pathways & Interactions for SNCG
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
Gene Network CentralTM Interacting Genes and Proteins Network for SNCG 
5/15 Interacting proteins for SNCG (ENSP000003446583 O760701) via UniProtKB, MINT, and/or STRING (see all 15
)About this table
|
Drugs & Compounds for SNCG(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for SNCG 2 Novoseek chemical compound relationships for SNCG gene
About this table
|
Transcripts for SNCG(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_003087
Sigma-Aldrich siRNA and siRNA Panels for SNCG  Sigma-Aldrich shRNA for SNCG  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_003087 REFSEQ mRNAs for SNCG gene: NM_003087.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_003087               OriGene GFP tagged cDNA clone in CMV expression vector: NM_003087                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_003087                                  untagged cDNA clone in CMV expression vector: NM_003087  Additional cDNA sequence: AF010126.1 AF017256.1 AF411524.1 AK223367.1 AK311652.1 AK312141.1 BC014098.2 CR541788.1 CR541790.1 EU019993.1 9 DOTS entries: DT.444070 DT.121238404 DT.95243972 DT.97843198 DT.121238422 DT.91744356 DT.95169337 DT.121238439 DT.99965408 24/267 AceView cDNA sequences (see all 267
):AI637713 BQ430954 H49348 BM748818 AB075855 BM668990 BQ218148 CB107161 NM_006829 AJ346418 CD722742 BM704419 BG413520 CR541788 AI434794 BE299889 BE566379 CR541790 CB045310 BI836596 AA486472 CA434240 CA406377 BQ219402
highest scoring ESTs for SNCG:AA055968 AA056035 AA235594 AA293803 AA365132 AA394097 AA402624 AA410737 AA411094 AA421708 Unigene Cluster for SNCG: Synuclein, gamma (breast cancer-specific protein 1) Hs.349470 [show with all ESTs]Unigene Representative Sequence: BU595229
GeneLoc Exon Structure
5/7 Alternative Splicing Database (ASD) splice patterns (SP) for SNCG (see all 7
)
| ExUns: | 1a | · | 1b | · | 1c | · | 1d | ^ | 2a | · | 2b | · | 2c | ^ | 3a | · | 3b | · | 3c | · | 3d | ^ | 4a | · | 4b | ^ | 5a | · | 5b | · | 5c | · | 5d | |
| SP1: | |   | |   | |   | |   | - |   | |   | - |   | - |   | - |   | |   | - |   | |   | - |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | - |   | |   | - |   | - |   | |   | |   | - |   | |   | - |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | - |   | |   | - |   | |   | |   | |   | - |   | |   | - |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | |   | - |   | |   | - |   | - |   | - |   | |   | - |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | |   | |   | |   | - |   | - |   | - |   | |   | - |   | |   | - |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for SNCG
2 Ensembl transcripts including schematic representations: ENST00000348795
ENST00000372017
|
Expression for SNCG
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| SNCG expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for SNCG
1 / 2 / 3 5 probe-sets matching SNCG gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: CGGCTGCCCA
SOURCE GeneReport for Unigene cluster: Hs.349470
Expression variation in blood from EXPOLDB for SNCG UniProtKB/Swiss-Prot: SYUG_HUMAN, O76070Tissue specificity: Highly expressed in brain, particularly in the substantia nigra. Also expressed in the corpus callosum, heart, skeletal muscle, ovary, testis, colon and spleen. Weak expression in pancreas, kidney and lung |
Orthologs for SNCG
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for SNCG gene from 5/8 species (see all 8
)
About this table Species with no ortholog for SNCG
ENSEMBL Gene Tree for SNCG | Paralogs for SNCG(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for SNCG gene
- SNCB2 SNCA2
|
SNPs/Variants for SNCG(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for SNCG (up to first 250kb)
|
Disorders & Mutations for SNCG
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 602998
UniProtKB/Swiss-Prot: SYUG_HUMAN, O76070
Brain iron accumulation type 1 (NBIA1, also called Hallervorden-Spatz syndrome), a rare neuroaxonal dystrophy, is histologically characterized by axonal spheroids, iron deposition, Lewy body (LB)-like intraneuronal inclusions, glial inclusions and neurofibrillary tangles. SNCG is found in spheroids but not in inclusions10/30 Novoseek disease relationships for SNCG gene (see all 30
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| neurodegenerative diseases |
73.90 |
16 |
11091093 (1), 11369507 (1), 17681534 (1), 12559990 (1) (see all 13) |
| parkinson disease |
71.79 |
13 |
10557341 (2), 17681534 (1), 10852916 (1), 12446933 (1) (see all 12) |
| multiple system atrophy |
71.47 |
1 |
9749615 (1) |
| lewy body disease |
67.93 |
4 |
18577885 (2), 10557341 (1) |
| breast carcinoma |
58.52 |
28 |
12072430 (2), 11526506 (2), 16773211 (2), 17234772 (1) (see all 14) |
| alzheimers disease |
54.13 |
11 |
11433431 (2), 9044857 (1), 10777786 (1), 18461469 (1) (see all 9) |
| neurodegeneration |
52.89 |
4 |
19246516 (1), 10934140 (1), 9700196 (1) |
| dementia |
49.67 |
4 |
18577885 (2), 17681539 (1), 10557341 (1) |
| breast cancer |
47.19 |
96 |
14504205 (6), 16142440 (6), 16821081 (5), 17534899 (5) (see all 21) |
| neuropathology |
42.66 |
1 |
10934140 (1) |
About this table
Genetic Association Database: SNCG Human Genome Epidemiology Navigator: SNCG (3 documents) Tumor Gene Database: SNCG Breast Cancer Gene Database: SNCG
|
Medical News for SNCG(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for SNCG (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/123 PubMed articles for SNCG gene (see all 123
):- Organization, expression and polymorphism of the human persyn gene. (PubMed id 9700196)1, 2, 3, 4 Ninkina N.N....Buchman V.L. (1998)
- Identification of a breast cancer-specific gene, BCSG1, by direct differential cDNA sequencing. (PubMed id 9044857)1, 2, 3, 4 Ji H.... Shi Y.E. (1997)
- Gamma synuclein: subcellular localization in neuronal and non- neuronal cells and effect on signal transduction. (PubMed id 11746666)1, 3, 4 Surguchov A.... Surgucheva I. (2001)
- Identification, localization and characterization of the human gamma- synuclein gene. (PubMed id 9737786)1, 3, 4 Lavedan C.... Polymeropoulos M.H. (1998)
- Evaluation of the gamma-synuclein gene in German Parkinson's disease patients. (PubMed id 11585599)1, 3, 6 Kruger R....Riess O. (2001)
- Synucleins are a novel class of substrates for G protein-coupled receptor kinases. (PubMed id 10852916)1, 3, 4 Pronin A.N.... Benovic J.L. (2000)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- [Study on gamma-synuclein gene in patients with idiopathic Parkinson's disease] (PubMed id 14556204)3, 6 Su J.J....Ren D.M. (2003)
- Expression of neuronal protein synuclein gamma gene as a novel marker for breast cancer prognosis. (PubMed id 16821081)1, 3 Wu K....Shi Y.E. (2007)
- Blockade of AP1 transactivation abrogates the abnormal expression of breast cancer-specific gene 1 in breast cancer cells. (PubMed id 12072430)1, 3 Lu A....Liu J. (2002)
|
Search for SNCG
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing SNCG
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing SNCG
(According to HUGE)
About This Section
| -- |
Specialized Databases showing SNCG(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for SNCG(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for SNCG:

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Incremental update: 13 Oct 2009
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