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Aliases for SNAR-I Gene

Subcategory (RNA class) for SNAR-I Gene

non-coding RNA

Quality Score for this RNA gene is

2

Aliases for SNAR-I Gene

  • Small ILF3/NF90-Associated RNA I 2 3
  • Small ILF3/NF90-Associated RNA 3 2 3
  • SnaR-3 3

External Ids for SNAR-I Gene

Previous GeneCards Identifiers for SNAR-I Gene

  • GC03U901118
  • GC03P190595

Summaries for SNAR-I Gene

GeneCards Summary for SNAR-I Gene

SNAR-I (Small ILF3/NF90-Associated RNA I) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SNAR-I Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNAR-I Gene

Genomics for SNAR-I Gene

GeneHancer (GH) Regulatory Elements for SNAR-I Gene

Promoters and enhancers for SNAR-I Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I190862 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE 0.4 -15.0 -15024 1.4 PKNOX1 RFX5 ZNF335 GLIS2 ZNF366 CREM SP3 MCM5 REST ZNF512B GMNC SNAR-I LOC100131685
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNAR-I on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNAR-I gene promoter:

Genomic Locations for SNAR-I Gene

Genomic Locations for SNAR-I Gene
chr3:190,877,930-190,878,050
(GRCh38/hg38)
Size:
121 bases
Orientation:
Plus strand
chr3:190,595,719-190,595,839
(GRCh37/hg19)

Genomic View for SNAR-I Gene

Genes around SNAR-I on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNAR-I Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNAR-I Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNAR-I Gene

Proteins for SNAR-I Gene

Post-translational modifications for SNAR-I Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNAR-I Gene

Domains & Families for SNAR-I Gene

Gene Families for SNAR-I Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNAR-I: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNAR-I Gene

Function for SNAR-I Gene

Phenotypes From GWAS Catalog for SNAR-I Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNAR-I Gene

Localization for SNAR-I Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNAR-I Gene

Pathways & Interactions for SNAR-I Gene

SuperPathways for SNAR-I Gene

No Data Available

Interacting Proteins for SNAR-I Gene

Gene Ontology (GO) - Biological Process for SNAR-I Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNAR-I Gene

Drugs & Compounds for SNAR-I Gene

No Compound Related Data Available

Transcripts for SNAR-I Gene

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNAR-I Gene

No ASD Table

Relevant External Links for SNAR-I Gene

GeneLoc Exon Structure for
SNAR-I
ECgene alternative splicing isoforms for
SNAR-I

No data available for mRNA/cDNA for SNAR-I Gene

Expression for SNAR-I Gene

SOURCE GeneReport for Unigene cluster for SNAR-I Gene:

Hs.717310
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNAR-I Gene

Orthologs for SNAR-I Gene

No data available for Orthologs and Evolution for SNAR-I Gene

Paralogs for SNAR-I Gene

No data available for Paralogs for SNAR-I Gene

Variants for SNAR-I Gene

Sequence variations from dbSNP and Humsavar for SNAR-I Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1002032225 -- 190,878,415(+) G/A downstream_transcript_variant
rs1003033218 -- 190,877,247(+) G/A upstream_transcript_variant
rs1003233306 -- 190,877,579(+) G/A/C upstream_transcript_variant
rs1005431666 -- 190,877,597(+) C/A/G upstream_transcript_variant
rs1006467272 -- 190,876,098(+) T/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNAR-I Gene

Variant ID Type Subtype PubMed ID
esv3893843 CNV gain 25118596
nsv963392 CNV duplication 23825009

Additional Variant Information for SNAR-I Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNAR-I

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNAR-I Gene

Disorders for SNAR-I Gene

Additional Disease Information for SNAR-I

No disorders were found for SNAR-I Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNAR-I Gene

Publications for SNAR-I Gene

  1. GWAS of cerebrospinal fluid tau levels identifies risk variants for Alzheimer's disease. (PMID: 23562540) Cruchaga C … Goate AM (Neuron 2013) 3 58
  2. Novel rapidly evolving hominid RNAs bind nuclear factor 90 and display tissue-restricted distribution. (PMID: 17855395) Parrott AM … Mathews MB (Nucleic acids research 2007) 3 58

Products for SNAR-I Gene

Sources for SNAR-I Gene

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