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Aliases for SNAR-I Gene

Subcategory (RNA class) for SNAR-I Gene

non-coding RNA

Quality Score for this RNA gene is

2

Aliases for SNAR-I Gene

  • Small ILF3/NF90-Associated RNA I 2 3
  • Small ILF3/NF90-Associated RNA 3 2 3
  • SnaR-3 3

External Ids for SNAR-I Gene

Previous GeneCards Identifiers for SNAR-I Gene

  • GC03U901118
  • GC03P190595

Summaries for SNAR-I Gene

GeneCards Summary for SNAR-I Gene

SNAR-I (Small ILF3/NF90-Associated RNA I) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNAR-I Gene

Genomics for SNAR-I Gene

Regulatory Elements for SNAR-I Gene

Enhancers for SNAR-I Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03G190862 0.9 ENCODE 0.4 -15.2 -15177 1.1 PKNOX1 FOXA2 RFX5 GLIS2 GATA2 ZNF366 FOS CREM SP3 CEBPB SNAR-I LOC100131685
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNAR-I on UCSC Golden Path with GeneCards custom track

Genomic Location for SNAR-I Gene

Chromosome:
3
Start:
190,877,930 bp from pter
End:
190,878,050 bp from pter
Size:
121 bases
Orientation:
Plus strand

Genomic View for SNAR-I Gene

Genes around SNAR-I on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNAR-I Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNAR-I Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNAR-I Gene

Proteins for SNAR-I Gene

Post-translational modifications for SNAR-I Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNAR-I Gene

Domains & Families for SNAR-I Gene

Gene Families for SNAR-I Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNAR-I: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNAR-I Gene

Function for SNAR-I Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNAR-I Gene

Localization for SNAR-I Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNAR-I Gene

Pathways & Interactions for SNAR-I Gene

SuperPathways for SNAR-I Gene

No Data Available

Interacting Proteins for SNAR-I Gene

Gene Ontology (GO) - Biological Process for SNAR-I Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNAR-I Gene

Transcripts for SNAR-I Gene

Alternative Splicing Database (ASD) splice patterns (SP) for SNAR-I Gene

No ASD Table

Relevant External Links for SNAR-I Gene

GeneLoc Exon Structure for
SNAR-I
ECgene alternative splicing isoforms for
SNAR-I

No data available for mRNA/cDNA for SNAR-I Gene

Expression for SNAR-I Gene

SOURCE GeneReport for Unigene cluster for SNAR-I Gene:

Hs.717310
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNAR-I Gene

Orthologs for SNAR-I Gene

No data available for Orthologs and Evolution for SNAR-I Gene

Paralogs for SNAR-I Gene

No data available for Paralogs for SNAR-I Gene

Variants for SNAR-I Gene

Sequence variations from dbSNP and Humsavar for SNAR-I Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1002032225 -- 190,878,415(+) TTGTG(A/G)TAATT downstream-variant-500B
rs1003033218 -- 190,877,247(+) CGGAA(A/G)TGACA upstream-variant-2KB
rs1003233306 -- 190,877,579(+) GGGGC(C/G)AGATC upstream-variant-2KB
rs1005431666 -- 190,877,597(+) GCCAG(C/G)AGTTC upstream-variant-2KB
rs1006467272 -- 190,876,098(+) GAGTC(A/T)CGGTG upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNAR-I Gene

Variant ID Type Subtype PubMed ID
esv3893843 CNV gain 25118596
nsv963392 CNV duplication 23825009

Relevant External Links for SNAR-I Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNAR-I

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNAR-I Gene

Disorders for SNAR-I Gene

Relevant External Links for SNAR-I

Genetic Association Database (GAD)
SNAR-I
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNAR-I

No disorders were found for SNAR-I Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNAR-I Gene

Publications for SNAR-I Gene

  1. GWAS of cerebrospinal fluid tau levels identifies risk variants for Alzheimer's disease. (PMID: 23562540) Cruchaga C. … Goate A.M. (Neuron 2013) 3 64
  2. Novel rapidly evolving hominid RNAs bind nuclear factor 90 and display tissue-restricted distribution. (PMID: 17855395) Parrott A.M. … Mathews M.B. (Nucleic Acids Res. 2007) 3 64

Products for SNAR-I Gene

Sources for SNAR-I Gene

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