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Aliases for SNAR-G1 Gene

Subcategory (RNA class) for SNAR-G1 Gene

non-coding RNA

Quality Score for this RNA gene is

2

Aliases for SNAR-G1 Gene

  • Small ILF3/NF90-Associated RNA G1 2 3
  • Small Nuclear ILF3/NF90-Associated RNA G1 2

External Ids for SNAR-G1 Gene

Previous GeneCards Identifiers for SNAR-G1 Gene

  • GC19U900750
  • GC19P049540

Summaries for SNAR-G1 Gene

GeneCards Summary for SNAR-G1 Gene

SNAR-G1 (Small ILF3/NF90-Associated RNA G1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SNAR-G1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNAR-G1 Gene

Genomics for SNAR-G1 Gene

GeneHancer (GH) Regulatory Elements for SNAR-G1 Gene

Promoters and enhancers for SNAR-G1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19I049036 Promoter 1.1 EPDnew 550.8 -0.2 -198 0.1 HDAC1 PKNOX1 ATF1 RB1 ARNT ZBTB40 E2F8 FOS ATF7 CREM CGB1 ENSG00000267335 SNAR-G1 CGB7 NTF4 LOC101059948 CGB2
GH19I049038 Enhancer 0.7 ENCODE 550.8 +1.8 1779 0.2 SMARCE1 SIN3A CBFA2T3 DPF2 ZIC2 FOSL1 JUND SMARCA4 GLIS1 ZNF629 CGB1 ENSG00000267335 NTF6B SNAR-G1 CGB7 NTF4 RUVBL2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNAR-G1 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the SNAR-G1 gene promoter:

Genomic Locations for SNAR-G1 Gene

Genomic Locations for SNAR-G1 Gene
chr19:49,037,020-49,037,147
(GRCh38/hg38)
Size:
128 bases
Orientation:
Plus strand
chr19:49,540,277-49,540,404
(GRCh37/hg19)

Genomic View for SNAR-G1 Gene

Genes around SNAR-G1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNAR-G1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNAR-G1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNAR-G1 Gene

Proteins for SNAR-G1 Gene

Post-translational modifications for SNAR-G1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNAR-G1 Gene

Domains & Families for SNAR-G1 Gene

Gene Families for SNAR-G1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNAR-G1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNAR-G1 Gene

Function for SNAR-G1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNAR-G1 Gene

Localization for SNAR-G1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNAR-G1 Gene

Pathways & Interactions for SNAR-G1 Gene

SuperPathways for SNAR-G1 Gene

No Data Available

Interacting Proteins for SNAR-G1 Gene

Gene Ontology (GO) - Biological Process for SNAR-G1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNAR-G1 Gene

Drugs & Compounds for SNAR-G1 Gene

No Compound Related Data Available

Transcripts for SNAR-G1 Gene

mRNA/cDNA for SNAR-G1 Gene

(1) Additional mRNA sequences :

Unigene Clusters for SNAR-G1 Gene

Small ILF3/NF90-associated RNA G1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNAR-G1 Gene

No ASD Table

Relevant External Links for SNAR-G1 Gene

GeneLoc Exon Structure for
SNAR-G1
ECgene alternative splicing isoforms for
SNAR-G1

Expression for SNAR-G1 Gene

SOURCE GeneReport for Unigene cluster for SNAR-G1 Gene:

Hs.621635
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNAR-G1 Gene

Orthologs for SNAR-G1 Gene

No data available for Orthologs and Evolution for SNAR-G1 Gene

Paralogs for SNAR-G1 Gene

No data available for Paralogs for SNAR-G1 Gene

Variants for SNAR-G1 Gene

Sequence variations from dbSNP and Humsavar for SNAR-G1 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1002736778 -- 49,036,378(+) C/T upstream_transcript_variant
rs1002813143 -- 49,036,922(+) A/C upstream_transcript_variant
rs1003198893 -- 49,036,486(+) CCCC/CCC upstream_transcript_variant
rs1004580892 -- 49,037,599(+) CG/ downstream_transcript_variant
rs1006251902 -- 49,037,034(+) G/C non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for SNAR-G1 Gene

Variant ID Type Subtype PubMed ID
dgv592n67 CNV loss 20364138
esv22462 CNV gain 19812545
esv2718698 CNV deletion 23290073
nsv579907 CNV loss 21841781
nsv833857 CNV loss 17160897
nsv833859 CNV loss 17160897
nsv953598 CNV deletion 24416366
nsv9739 CNV gain+loss 18304495
nsv978832 CNV duplication 23825009

Additional Variant Information for SNAR-G1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNAR-G1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNAR-G1 Gene

Disorders for SNAR-G1 Gene

Additional Disease Information for SNAR-G1

No disorders were found for SNAR-G1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNAR-G1 Gene

Publications for SNAR-G1 Gene

  1. Novel rapidly evolving hominid RNAs bind nuclear factor 90 and display tissue-restricted distribution. (PMID: 17855395) Parrott AM … Mathews MB (Nucleic acids research 2007) 3 58

Products for SNAR-G1 Gene

Sources for SNAR-G1 Gene

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