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Aliases for SNAR-F Gene

Subcategory (RNA class) for SNAR-F Gene

non-coding RNA

Quality Score for this RNA gene is

2

Aliases for SNAR-F Gene

  • Small ILF3/NF90-Associated RNA F 2 3
  • Small Nuclear ILF3/NF90-Associated RNA F 2

External Ids for SNAR-F Gene

Previous GeneCards Identifiers for SNAR-F Gene

  • GC19U900755
  • GC19P051108

Summaries for SNAR-F Gene

GeneCards Summary for SNAR-F Gene

SNAR-F (Small ILF3/NF90-Associated RNA F) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNAR-F Gene

Genomics for SNAR-F Gene

Regulatory Elements for SNAR-F Gene

Enhancers for SNAR-F Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19F050608 0.9 ENCODE 0.8 +3.2 3236 0.2 CBX3 PKNOX1 ATF1 TBL1XR1 CREB3L1 RAD21 RFX5 SCRT2 FOS CREM ZNF175 NUP62 SNAR-F C19orf81
GH19F050591 0.7 ENCODE 0.4 -13.2 -13205 0.2 CTCF LEF1 ZNF362 MAZ ZNF654 ZNF740 NR2F1 TEAD4 REST ZNF384 LRRC4B LINC01869 KLK1 KLK15 SNAR-F
GH19F050568 0.7 ENCODE 0.3 -36.5 -36515 0.1 ZSCAN18 MAZ SP3 SP2 POLR2A PATZ1 IKZF1 WT1 ZNF785 EGR2 LRRC4B SNAR-F
GH19F050569 0.4 ENCODE 0.3 -36.0 -36015 0.1 ZNF512 LRRC4B SNAR-F
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNAR-F on UCSC Golden Path with GeneCards custom track

Genomic Location for SNAR-F Gene

Chromosome:
19
Start:
50,604,963 bp from pter
End:
50,605,085 bp from pter
Size:
123 bases
Orientation:
Plus strand

Genomic View for SNAR-F Gene

Genes around SNAR-F on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNAR-F Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNAR-F Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNAR-F Gene

Proteins for SNAR-F Gene

Post-translational modifications for SNAR-F Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNAR-F Gene

Domains & Families for SNAR-F Gene

Gene Families for SNAR-F Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNAR-F: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNAR-F Gene

Function for SNAR-F Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNAR-F Gene

Localization for SNAR-F Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for SNAR-F gene
Compartment Confidence
plasma membrane 2
extracellular 2
cytosol 2
mitochondrion 1
endoplasmic reticulum 1
lysosome 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for SNAR-F Gene

Pathways & Interactions for SNAR-F Gene

SuperPathways for SNAR-F Gene

No Data Available

Interacting Proteins for SNAR-F Gene

Gene Ontology (GO) - Biological Process for SNAR-F Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNAR-F Gene

Transcripts for SNAR-F Gene

Alternative Splicing Database (ASD) splice patterns (SP) for SNAR-F Gene

No ASD Table

Relevant External Links for SNAR-F Gene

GeneLoc Exon Structure for
SNAR-F
ECgene alternative splicing isoforms for
SNAR-F

No data available for mRNA/cDNA for SNAR-F Gene

Expression for SNAR-F Gene

SOURCE GeneReport for Unigene cluster for SNAR-F Gene:

Hs.707968
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNAR-F Gene

Orthologs for SNAR-F Gene

No data available for Orthologs and Evolution for SNAR-F Gene

Paralogs for SNAR-F Gene

No data available for Paralogs for SNAR-F Gene

Variants for SNAR-F Gene

Sequence variations from dbSNP and Humsavar for SNAR-F Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs10421679 -- 50,604,187(+) TCTCG(A/C)CTCGC upstream-variant-2KB
rs112740063 -- 50,603,833(+) GTCGG(C/T)CGCTC upstream-variant-2KB
rs113083997 -- 50,604,843(+) GGGGG(C/T)GCCAT upstream-variant-2KB
rs113259000 -- 50,603,316(+) CTGTC(A/G)CCCAG upstream-variant-2KB
rs113269187 -- 50,605,440(+) CCTTG(A/G)CCTCC downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for SNAR-F Gene

Variant ID Type Subtype PubMed ID
nsv579949 CNV loss 21841781
nsv512587 CNV loss 21212237
nsv1152956 OTHER inversion 26484159
nsv1140251 OTHER inversion 24896259
nsv1133010 OTHER inversion 24896259
nsv1112748 CNV deletion 24896259
nsv1065222 CNV loss 25217958
esv3583461 CNV loss 25503493
esv25869 CNV loss 19812545
dgv6513n54 CNV gain 21841781

Relevant External Links for SNAR-F Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNAR-F

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNAR-F Gene

Disorders for SNAR-F Gene

Relevant External Links for SNAR-F

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNAR-F

No disorders were found for SNAR-F Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNAR-F Gene

Publications for SNAR-F Gene

  1. Novel rapidly evolving hominid RNAs bind nuclear factor 90 and display tissue-restricted distribution. (PMID: 17855395) Parrott A.M. … Mathews M.B. (Nucleic Acids Res. 2007) 3 64

Products for SNAR-F Gene

Sources for SNAR-F Gene

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