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Aliases for SNAR-E Gene

Subcategory (RNA class) for SNAR-E Gene

non-coding RNA

Quality Score for this RNA gene is

2

Aliases for SNAR-E Gene

  • Small ILF3/NF90-Associated RNA E 2 3

External Ids for SNAR-E Gene

Previous GeneCards Identifiers for SNAR-E Gene

  • GC19U900948
  • GC19M047333

Summaries for SNAR-E Gene

GeneCards Summary for SNAR-E Gene

SNAR-E (Small ILF3/NF90-Associated RNA E) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNAR-E Gene

Genomics for SNAR-E Gene

Regulatory Elements for SNAR-E Gene

Enhancers for SNAR-E Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19F046828 1 Ensembl ENCODE 0.8 +0.9 888 2.1 CTCF ESRRA PKNOX1 TAF1 ZMYM3 SIN3A ZNF384 FEZF1 ZNF2 ZEB1 STRN4 FKRP PRKD2 ARHGAP35 SLC1A5 ENSG00000269014 SNAR-E
GH19F046839 0.8 ENCODE 0.4 -10.2 -10225 3.2 PKNOX1 ARID4B GATA2 ZNF143 KLF13 REST ZNF592 CREB3 MEF2D PBX2 IRF2BP1 ZC3H4 ENSG00000268810 EHD2 ENSG00000268746 AP2S1 GAPDHP38 PIR58352 SNAR-E
GH19F046843 0.8 ENCODE 0.4 -13.3 -13333 1.6 HDGF HDAC1 GATA2 CREM SMARCA5 ZBTB2 NCOA1 CEBPB ZEB2 REST ENSG00000268810 ZC3H4 CCDC61 GLTSCR2-AS1 GLTSCR1 PIR58352 SNAR-E
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around SNAR-E on UCSC Golden Path with GeneCards custom track

Genomic Location for SNAR-E Gene

Chromosome:
19
Start:
46,830,585 bp from pter
End:
46,830,704 bp from pter
Size:
120 bases
Orientation:
Minus strand

Genomic View for SNAR-E Gene

Genes around SNAR-E on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNAR-E Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNAR-E Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNAR-E Gene

Proteins for SNAR-E Gene

Post-translational modifications for SNAR-E Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNAR-E Gene

Domains & Families for SNAR-E Gene

Gene Families for SNAR-E Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNAR-E: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNAR-E Gene

Function for SNAR-E Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNAR-E Gene

Localization for SNAR-E Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNAR-E Gene

Pathways & Interactions for SNAR-E Gene

SuperPathways for SNAR-E Gene

No Data Available

Interacting Proteins for SNAR-E Gene

Gene Ontology (GO) - Biological Process for SNAR-E Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNAR-E Gene

Transcripts for SNAR-E Gene

mRNA/cDNA for SNAR-E Gene

(1) Additional mRNA sequences :

Unigene Clusters for SNAR-E Gene

Small ILF3/NF90-associated RNA E:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SNAR-E Gene

No ASD Table

Relevant External Links for SNAR-E Gene

GeneLoc Exon Structure for
SNAR-E
ECgene alternative splicing isoforms for
SNAR-E

Expression for SNAR-E Gene

mRNA expression in normal human tissues for SNAR-E Gene

mRNA expression in normal human tissues for SNAR-E Gene

SOURCE GeneReport for Unigene cluster for SNAR-E Gene:

Hs.541243
genes like me logo Genes that share expression patterns with SNAR-E: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNAR-E Gene

Orthologs for SNAR-E Gene

No data available for Orthologs and Evolution for SNAR-E Gene

Paralogs for SNAR-E Gene

No data available for Paralogs for SNAR-E Gene

Variants for SNAR-E Gene

Sequence variations from dbSNP and Humsavar for SNAR-E Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs10415906 -- 46,830,783(+) CAGCA(A/G)AAATA upstream-variant-2KB
rs113516498 -- 46,830,240(+) CACAC(A/T)CTTAC downstream-variant-500B
rs116251087 -- 46,830,698(+) CAATG(A/G)CTCCA nc-transcript-variant
rs12609741 -- 46,831,684(+) ctctg(A/T)tgcct upstream-variant-2KB
rs12982869 -- 46,832,491(+) tacga(A/G)aatta upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNAR-E Gene

Variant ID Type Subtype PubMed ID
dgv3608n100 CNV gain 25217958
esv3583444 CNV loss 25503493
esv3893224 CNV gain 25118596
nsv1065221 CNV gain 25217958
nsv833850 CNV loss 17160897

Relevant External Links for SNAR-E Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNAR-E

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNAR-E Gene

Disorders for SNAR-E Gene

Relevant External Links for SNAR-E

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNAR-E

No disorders were found for SNAR-E Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNAR-E Gene

Publications for SNAR-E Gene

  1. SNARE protein expression and localization in human cytotoxic T lymphocytes. (PMID: 22120889) Pattu V. … Hoth M. (Eur. J. Immunol. 2012) 3 64
  2. Munc18c phosphorylation by the insulin receptor links cell signaling directly to SNARE exocytosis. (PMID: 21444687) Jewell J.L. … Thurmond D.C. (J. Cell Biol. 2011) 3 64
  3. Novel rapidly evolving hominid RNAs bind nuclear factor 90 and display tissue-restricted distribution. (PMID: 17855395) Parrott A.M. … Mathews M.B. (Nucleic Acids Res. 2007) 3 64

Products for SNAR-E Gene

Sources for SNAR-E Gene

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