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Aliases for SNAR-E Gene

Subcategory (RNA class) for SNAR-E Gene

non-coding RNA

Quality Score for this RNA gene is

2

Aliases for SNAR-E Gene

  • Small ILF3/NF90-Associated RNA E 2 3

External Ids for SNAR-E Gene

Previous GeneCards Identifiers for SNAR-E Gene

  • GC19U900948
  • GC19M047333

Summaries for SNAR-E Gene

GeneCards Summary for SNAR-E Gene

SNAR-E (Small ILF3/NF90-Associated RNA E) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SNAR-E Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNAR-E Gene

Genomics for SNAR-E Gene

Regulatory Elements for SNAR-E Gene

Enhancers for SNAR-E Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19H046828 1.1 Ensembl ENCODE 0.7 +0.9 888 2 PKNOX1 ZSCAN4 SIN3A FEZF1 RAD21 ZEB1 FOS RCOR1 ZNF391 SMARCA5 STRN4 FKRP PRKD2 ARHGAP35 SLC1A5 ENSG00000269014 SNAR-E
GH19H046839 1.4 Ensembl ENCODE dbSUPER 0.4 -10.2 -10225 3 PKNOX1 ATF1 NFIB ARID4B ZBTB40 RAD21 ZNF766 GATA2 ZNF143 CREM CCDC61 SYMPK STRN4 ZC3H4 AP2S1 GAPDHP38 PIR58352 SNAR-E
GH19H046843 0.9 ENCODE 0.4 -13.3 -13333 1 HDGF ARNT TCF12 GATA2 ATF7 NCOA1 REST ZNF623 ZNF592 MEF2D ENSG00000268810 ZC3H4 CCDC61 SYMPK NOP53-AS1 BICRA PIR58352 SNAR-E
GH19H046838 0.4 dbSUPER 0.4 -8.0 -8049 0 ZNF362 GAPDHP38 PIR58352 SNAR-E
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNAR-E on UCSC Golden Path with GeneCards custom track

Genomic Location for SNAR-E Gene

Chromosome:
19
Start:
46,830,585 bp from pter
End:
46,830,704 bp from pter
Size:
120 bases
Orientation:
Minus strand

Genomic View for SNAR-E Gene

Genes around SNAR-E on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNAR-E Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNAR-E Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNAR-E Gene

Proteins for SNAR-E Gene

Post-translational modifications for SNAR-E Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNAR-E Gene

Domains & Families for SNAR-E Gene

Gene Families for SNAR-E Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNAR-E: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNAR-E Gene

Function for SNAR-E Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for SNAR-E
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNAR-E Gene

Localization for SNAR-E Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNAR-E Gene

Pathways & Interactions for SNAR-E Gene

SuperPathways for SNAR-E Gene

No Data Available

Interacting Proteins for SNAR-E Gene

Gene Ontology (GO) - Biological Process for SNAR-E Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNAR-E Gene

Drugs & Compounds for SNAR-E Gene

No Compound Related Data Available

Transcripts for SNAR-E Gene

mRNA/cDNA for SNAR-E Gene

(1) Additional mRNA sequences :

Unigene Clusters for SNAR-E Gene

Small ILF3/NF90-associated RNA E:
Representative Sequences:

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for SNAR-E
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for SNAR-E Gene

No ASD Table

Relevant External Links for SNAR-E Gene

GeneLoc Exon Structure for
SNAR-E
ECgene alternative splicing isoforms for
SNAR-E

Expression for SNAR-E Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNAR-E Gene

mRNA expression in normal human tissues for SNAR-E Gene

SOURCE GeneReport for Unigene cluster for SNAR-E Gene:

Hs.541243
genes like me logo Genes that share expression patterns with SNAR-E: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNAR-E Gene

Orthologs for SNAR-E Gene

No data available for Orthologs and Evolution for SNAR-E Gene

Paralogs for SNAR-E Gene

No data available for Paralogs for SNAR-E Gene

Variants for SNAR-E Gene

Sequence variations from dbSNP and Humsavar for SNAR-E Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs1000897263 -- 46,830,468(+) GGTTT(A/C)ACCGT downstream-variant-500B
rs1000952343 -- 46,830,925(+) CCCAA(A/C)GGCCA upstream-variant-2KB
rs1002750166 -- 46,832,242(+) CTTTT(C/T)AATGT upstream-variant-2KB
rs1003110090 -- 46,832,520(+) CACCT(A/G)TAGTC upstream-variant-2KB
rs1003338214 -- 46,830,557(+) GAGCC(A/C)CCGCG downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for SNAR-E Gene

Variant ID Type Subtype PubMed ID
dgv3608n100 CNV gain 25217958
esv3583444 CNV loss 25503493
esv3893224 CNV gain 25118596
nsv1065221 CNV gain 25217958
nsv833850 CNV loss 17160897

Relevant External Links for SNAR-E Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNAR-E

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNAR-E Gene

Disorders for SNAR-E Gene

Relevant External Links for SNAR-E

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNAR-E

No disorders were found for SNAR-E Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNAR-E Gene

Publications for SNAR-E Gene

  1. SNARE protein expression and localization in human cytotoxic T lymphocytes. (PMID: 22120889) Pattu V … Hoth M (European journal of immunology 2012) 3 60
  2. Munc18c phosphorylation by the insulin receptor links cell signaling directly to SNARE exocytosis. (PMID: 21444687) Jewell JL … Thurmond DC (The Journal of cell biology 2011) 3 60
  3. Novel rapidly evolving hominid RNAs bind nuclear factor 90 and display tissue-restricted distribution. (PMID: 17855395) Parrott AM … Mathews MB (Nucleic acids research 2007) 3 60
  4. Yeast Two-Hybrid and One-Hybrid Screenings Identify Regulators of hsp70 Gene Expression. (PMID: 26873636) Saito Y … Nakayama Y (Journal of cellular biochemistry 2016) 3

Products for SNAR-E Gene

Sources for SNAR-E Gene

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