Free for academic non-profit institutions. Other users need a Commercial license

Aliases for SNAR-C4 Gene

Subcategory (RNA class) for SNAR-C4 Gene

non-coding RNA

Quality Score for this RNA gene is

2

Aliases for SNAR-C4 Gene

  • Small ILF3/NF90-Associated RNA C4 2 3

External Ids for SNAR-C4 Gene

Previous GeneCards Identifiers for SNAR-C4 Gene

  • GC19U900809
  • GC19P048442

Summaries for SNAR-C4 Gene

GeneCards Summary for SNAR-C4 Gene

SNAR-C4 (Small ILF3/NF90-Associated RNA C4) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNAR-C4 Gene

Genomics for SNAR-C4 Gene

Genomic Location for SNAR-C4 Gene

Start:
47,939,541 bp from pter
End:
47,939,660 bp from pter
Size:
120 bases
Orientation:
Plus strand

Genomic View for SNAR-C4 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SNAR-C4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNAR-C4 Gene

No data available for Regulatory Elements for SNAR-C4 Gene

Proteins for SNAR-C4 Gene

Post-translational modifications for SNAR-C4 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNAR-C4 Gene

Domains for SNAR-C4 Gene

Gene Families for SNAR-C4 Gene

HGNC:
  • snRNA :ncRNAs / Small nuclear RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNAR-C4: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNAR-C4 Gene

Function for SNAR-C4 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SNAR-C4 Gene

Localization for SNAR-C4 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNAR-C4 Gene

Pathways for SNAR-C4 Gene

SuperPathways for SNAR-C4 Gene

No Data Available

Interacting Proteins for SNAR-C4 Gene

Gene Ontology (GO) - Biological Process for SNAR-C4 Gene

None

No data available for Pathways by source for SNAR-C4 Gene

Transcripts for SNAR-C4 Gene

mRNA/cDNA for SNAR-C4 Gene

(1) Additional mRNA sequences :

Unigene Clusters for SNAR-C4 Gene

Small ILF3/NF90-associated RNA C4:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SNAR-C4 Gene

No ASD Table

Relevant External Links for SNAR-C4 Gene

GeneLoc Exon Structure for
SNAR-C4
ECgene alternative splicing isoforms for
SNAR-C4

Expression for SNAR-C4 Gene

SOURCE GeneReport for Unigene cluster for SNAR-C4 Gene Hs.560634

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for SNAR-C4 Gene

Orthologs for SNAR-C4 Gene

No data available for Orthologs and Evolution for SNAR-C4 Gene

Paralogs for SNAR-C4 Gene

No data available for Paralogs for SNAR-C4 Gene

Variants for SNAR-C4 Gene

Sequence variations from dbSNP and Humsavar for SNAR-C4 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type MAF
rs62130016 -- 47,938,417(+) GGGCA(A/G)CAAGA upstream-variant-2KB
rs62130017 -- 47,938,432(+) AACTC(A/T)GTCTC upstream-variant-2KB
rs62130018 -- 47,938,460(+) GAAAA(A/G)GGATT upstream-variant-2KB
rs62130019 -- 47,938,462(+) AAAAG(A/G)ATTTA upstream-variant-2KB
rs62130020 -- 47,939,543(+) CACCC(A/G)GAGCT nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for SNAR-C4 Gene

Variant ID Type Subtype PubMed ID
nsv428367 CNV Gain+Loss 18775914
nsv2513 CNV Loss 18451855
nsv509748 CNV Insertion 20534489
nsv178 CNV Loss 15895083
esv991047 CNV Gain 20482838
nsv9739 CNV Gain+Loss 18304495
esv28347 CNV Gain+Loss 19812545

Relevant External Links for SNAR-C4 Gene

HapMap Linkage Disequilibrium report
SNAR-C4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for SNAR-C4 Gene

Disorders for SNAR-C4 Gene

No disorders were found for SNAR-C4 Gene.

No data available for UniProtKB/Swiss-Prot for SNAR-C4 Gene

Publications for SNAR-C4 Gene

  1. Novel rapidly evolving hominid RNAs bind nuclear factor 90 and display tissue-restricted distribution. (PMID: 17855395) Parrott A.M. … Mathews M.B. (Nucleic Acids Res. 2007) 3

Products for SNAR-C4 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate SNAR-C4
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for SNAR-C4
    • Block miRNA regulation of SNAR-C4 using miScript Target Protectors

    Sources for SNAR-C4 Gene

    Back to Top

    Content