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Aliases for SNAR-C3 Gene

Subcategory (RNA class) for SNAR-C3 Gene

non-coding RNA

Quality Score for this RNA gene is

2

Aliases for SNAR-C3 Gene

  • Small ILF3/NF90-Associated RNA C3 2 3

External Ids for SNAR-C3 Gene

Previous GeneCards Identifiers for SNAR-C3 Gene

  • GC19U900929
  • GC19P048453

Summaries for SNAR-C3 Gene

GeneCards Summary for SNAR-C3 Gene

SNAR-C3 (Small ILF3/NF90-Associated RNA C3) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNAR-C3 Gene

Genomics for SNAR-C3 Gene

Genomic Location for SNAR-C3 Gene

Chromosome:
19
Start:
47,950,296 bp from pter
End:
47,950,414 bp from pter
Size:
119 bases
Orientation:
Plus strand

Genomic View for SNAR-C3 Gene

Genes around SNAR-C3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNAR-C3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNAR-C3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNAR-C3 Gene

No data available for Regulatory Elements for SNAR-C3 Gene

Proteins for SNAR-C3 Gene

Post-translational modifications for SNAR-C3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNAR-C3 Gene

Domains & Families for SNAR-C3 Gene

Gene Families for SNAR-C3 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNAR-C3: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNAR-C3 Gene

Function for SNAR-C3 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNAR-C3 Gene

Localization for SNAR-C3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNAR-C3 Gene

Pathways & Interactions for SNAR-C3 Gene

SuperPathways for SNAR-C3 Gene

No Data Available

Interacting Proteins for SNAR-C3 Gene

Gene Ontology (GO) - Biological Process for SNAR-C3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNAR-C3 Gene

Transcripts for SNAR-C3 Gene

mRNA/cDNA for SNAR-C3 Gene

(1) Additional mRNA sequences :

Unigene Clusters for SNAR-C3 Gene

Small ILF3/NF90-associated RNA C3:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SNAR-C3 Gene

No ASD Table

Relevant External Links for SNAR-C3 Gene

GeneLoc Exon Structure for
SNAR-C3
ECgene alternative splicing isoforms for
SNAR-C3

Expression for SNAR-C3 Gene

SOURCE GeneReport for Unigene cluster for SNAR-C3 Gene:

Hs.467061
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNAR-C3 Gene

Orthologs for SNAR-C3 Gene

No data available for Orthologs and Evolution for SNAR-C3 Gene

Paralogs for SNAR-C3 Gene

No data available for Paralogs for SNAR-C3 Gene

Variants for SNAR-C3 Gene

Sequence variations from dbSNP and Humsavar for SNAR-C3 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs11490518 -- 47,948,665(+) AACCT(C/G)GCAGA upstream-variant-2KB
rs11490519 -- 47,948,687(+) AAAAG(A/G)AAAAT upstream-variant-2KB
rs142452627 -- 47,950,303(+) GGAGC(C/T)ATTGT nc-transcript-variant
rs184787263 -- 47,950,752(+) GTGCT(A/G)GGATG downstream-variant-500B
rs200287472 -- 47,949,458(+) ACCAA(C/G)ATTTC upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNAR-C3 Gene

Variant ID Type Subtype PubMed ID
dgv2017e59 CNV duplication 20981092
esv28347 CNV gain+loss 19812545
esv3360843 CNV duplication 20981092
esv3446926 CNV duplication 20981092
esv991047 CNV gain 20482838
nsv1056164 CNV gain 25217958
nsv1058622 CNV gain 25217958
nsv1078446 CNV duplication 25765185
nsv1118620 CNV duplication 24896259
nsv1141335 CNV duplication 24896259
nsv1153790 CNV duplication 26484159
nsv180 CNV insertion 15895083
nsv2513 CNV deletion 18451855
nsv2515 CNV insertion 18451855
nsv428367 CNV gain+loss 18775914
nsv509748 CNV insertion 20534489
nsv953595 CNV duplication 24416366
nsv961230 CNV duplication 23825009
nsv9739 CNV gain+loss 18304495

Relevant External Links for SNAR-C3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNAR-C3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNAR-C3 Gene

Disorders for SNAR-C3 Gene

Relevant External Links for SNAR-C3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNAR-C3

No disorders were found for SNAR-C3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNAR-C3 Gene

Publications for SNAR-C3 Gene

  1. Novel rapidly evolving hominid RNAs bind nuclear factor 90 and display tissue-restricted distribution. (PMID: 17855395) Parrott A.M. … Mathews M.B. (Nucleic Acids Res. 2007) 3 64

Products for SNAR-C3 Gene

Sources for SNAR-C3 Gene

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