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Aliases for SNAR-C1 Gene

Subcategory (RNA class) for SNAR-C1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for SNAR-C1 Gene

  • Small ILF3/NF90-Associated RNA C1 2 3

External Ids for SNAR-C1 Gene

Previous GeneCards Identifiers for SNAR-C1 Gene

  • GC19U900768
  • GC19P048458

Summaries for SNAR-C1 Gene

GeneCards Summary for SNAR-C1 Gene

SNAR-C1 (Small ILF3/NF90-Associated RNA C1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SNAR-C1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNAR-C1 Gene

Genomics for SNAR-C1 Gene

Regulatory Elements for SNAR-C1 Gene

Enhancers for SNAR-C1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH19H047963 0.9 ENCODE 0.4 +7.7 7667 0.2 PKNOX1 RB1 ZNF2 RAD21 ZEB1 GATA2 SCRT2 ZNF143 MIXL1 ZNF654 PLA2G4C BSPH1 ELSPBP1 CABP5 SULT2A1 LMTK3 TMEM143 SYNGR4 SNAR-C1 GC19M047959
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNAR-C1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SNAR-C1 Gene

Genomic Locations for SNAR-C1 Gene
120 bases
Plus strand

Genomic View for SNAR-C1 Gene

Genes around SNAR-C1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNAR-C1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNAR-C1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNAR-C1 Gene

Proteins for SNAR-C1 Gene

Post-translational modifications for SNAR-C1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNAR-C1 Gene

Domains & Families for SNAR-C1 Gene

Gene Families for SNAR-C1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNAR-C1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNAR-C1 Gene

Function for SNAR-C1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNAR-C1 Gene

Localization for SNAR-C1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNAR-C1 Gene

Pathways & Interactions for SNAR-C1 Gene

SuperPathways for SNAR-C1 Gene

No Data Available

Interacting Proteins for SNAR-C1 Gene

Gene Ontology (GO) - Biological Process for SNAR-C1 Gene


No data available for Pathways by source and SIGNOR curated interactions for SNAR-C1 Gene

Drugs & Compounds for SNAR-C1 Gene

No Compound Related Data Available

Transcripts for SNAR-C1 Gene

mRNA/cDNA for SNAR-C1 Gene

(2) Additional mRNA sequences :

Unigene Clusters for SNAR-C1 Gene

Small ILF3/NF90-associated RNA C1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNAR-C1 Gene

No ASD Table

Relevant External Links for SNAR-C1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SNAR-C1 Gene

SOURCE GeneReport for Unigene cluster for SNAR-C1 Gene:

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNAR-C1 Gene

Orthologs for SNAR-C1 Gene

No data available for Orthologs and Evolution for SNAR-C1 Gene

Paralogs for SNAR-C1 Gene

No data available for Paralogs for SNAR-C1 Gene

Variants for SNAR-C1 Gene

Sequence variations from dbSNP and Humsavar for SNAR-C1 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs1008466284 -- 47,955,530(+) ACTCT(C/G)AGATA upstream-variant-2KB
rs1019820299 -- 47,955,533(+) CTCAG(A/C)TACAG upstream-variant-2KB
rs111394127 -- 47,953,834(+) GAAAC(A/C)CTGAA upstream-variant-2KB
rs111963791 -- 47,954,975(+) ATCTC(A/C/G)CCTGT upstream-variant-2KB
rs112385489 -- 47,955,467(+) TTCTC(C/T)CCAGA upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNAR-C1 Gene

Variant ID Type Subtype PubMed ID
nsv9739 CNV gain+loss 18304495
nsv961230 CNV duplication 23825009
nsv509748 CNV insertion 20534489
nsv428367 CNV gain+loss 18775914
nsv2515 CNV insertion 18451855
nsv2514 CNV insertion 18451855
nsv2513 CNV deletion 18451855
nsv180 CNV insertion 15895083
nsv178 CNV deletion 15895083
nsv1153489 CNV duplication 26484159
nsv1141335 CNV duplication 24896259
nsv1124787 CNV duplication 24896259
nsv1118620 CNV duplication 24896259
nsv1110329 CNV duplication 24896259
nsv1078446 CNV duplication 25765185
nsv1058622 CNV gain 25217958
nsv1056164 CNV gain 25217958
esv991047 CNV gain 20482838
esv3583447 CNV loss 25503493
esv3446926 CNV duplication 20981092
esv3432524 CNV duplication 20981092
esv3386383 CNV duplication 20981092
esv3360843 CNV duplication 20981092
esv28347 CNV gain+loss 19812545
dgv2017e59 CNV duplication 20981092
dgv2016e59 CNV duplication 20981092
dgv1792n106 CNV duplication 24896259

Relevant External Links for SNAR-C1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNAR-C1 Gene

Disorders for SNAR-C1 Gene

Relevant External Links for SNAR-C1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for SNAR-C1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNAR-C1 Gene

Publications for SNAR-C1 Gene

  1. Novel rapidly evolving hominid RNAs bind nuclear factor 90 and display tissue-restricted distribution. (PMID: 17855395) Parrott AM … Mathews MB (Nucleic acids research 2007) 3 60

Products for SNAR-C1 Gene

Sources for SNAR-C1 Gene

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