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Aliases for SNAR-C1 Gene

Subcategory (RNA class) for SNAR-C1 Gene

non-coding RNA

Quality Score for this RNA gene is

2

Aliases for SNAR-C1 Gene

  • Small ILF3/NF90-Associated RNA C1 2 3

External Ids for SNAR-C1 Gene

Previous GeneCards Identifiers for SNAR-C1 Gene

  • GC19U900768
  • GC19P048458

Summaries for SNAR-C1 Gene

GeneCards Summary for SNAR-C1 Gene

SNAR-C1 (Small ILF3/NF90-Associated RNA C1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNAR-C1 Gene

Genomics for SNAR-C1 Gene

Genomic Location for SNAR-C1 Gene

Chromosome:
19
Start:
47,955,682 bp from pter
End:
47,955,801 bp from pter
Size:
120 bases
Orientation:
Plus strand

Genomic View for SNAR-C1 Gene

Genes around SNAR-C1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNAR-C1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNAR-C1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNAR-C1 Gene

No data available for Regulatory Elements for SNAR-C1 Gene

Proteins for SNAR-C1 Gene

Post-translational modifications for SNAR-C1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNAR-C1 Gene

Domains & Families for SNAR-C1 Gene

Gene Families for SNAR-C1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNAR-C1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNAR-C1 Gene

Function for SNAR-C1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNAR-C1 Gene

Localization for SNAR-C1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNAR-C1 Gene

Pathways & Interactions for SNAR-C1 Gene

SuperPathways for SNAR-C1 Gene

No Data Available

Interacting Proteins for SNAR-C1 Gene

Gene Ontology (GO) - Biological Process for SNAR-C1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNAR-C1 Gene

Drugs & Compounds for SNAR-C1 Gene

No Compound Related Data Available

Transcripts for SNAR-C1 Gene

mRNA/cDNA for SNAR-C1 Gene

(2) Additional mRNA sequences :

Unigene Clusters for SNAR-C1 Gene

Small ILF3/NF90-associated RNA C1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SNAR-C1 Gene

No ASD Table

Relevant External Links for SNAR-C1 Gene

GeneLoc Exon Structure for
SNAR-C1
ECgene alternative splicing isoforms for
SNAR-C1

Expression for SNAR-C1 Gene

SOURCE GeneReport for Unigene cluster for SNAR-C1 Gene Hs.717052

No Expression Related Data Available

In Situ Assay Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for SNAR-C1 Gene

Orthologs for SNAR-C1 Gene

No data available for Orthologs and Evolution for SNAR-C1 Gene

Paralogs for SNAR-C1 Gene

No data available for Paralogs for SNAR-C1 Gene

Variants for SNAR-C1 Gene

Sequence variations from dbSNP and Humsavar for SNAR-C1 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs4002948 -- 47,954,485(-) ctcct(G/T)cctca upstream-variant-2KB
rs4003287 -- 47,955,321(-) TGCTT(C/G)CCAGC upstream-variant-2KB
rs62129998 -- 47,955,751(+) AGGGC(A/T)CGAGT nc-transcript-variant
rs62130014 -- 47,953,890(+) ACCAA(C/T)CAGCG upstream-variant-2KB
rs62130015 -- 47,953,905(+) AAACC(G/T)TAGAC upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNAR-C1 Gene

Variant ID Type Subtype PubMed ID
nsv428367 CNV Gain+Loss 18775914
dgv3965n71 CNV Loss 21882294
nsv2513 CNV Loss 18451855
nsv509748 CNV Insertion 20534489
nsv178 CNV Loss 15895083
esv991047 CNV Gain 20482838
nsv9739 CNV Gain+Loss 18304495
esv28347 CNV Gain+Loss 19812545
nsv2514 CNV Insertion 18451855
nsv2515 CNV Insertion 18451855
nsv180 CNV Insertion 15895083

Relevant External Links for SNAR-C1 Gene

HapMap Linkage Disequilibrium report
SNAR-C1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNAR-C1 Gene

Disorders for SNAR-C1 Gene

Relevant External Links for SNAR-C1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNAR-C1

No disorders were found for SNAR-C1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNAR-C1 Gene

Publications for SNAR-C1 Gene

  1. Novel rapidly evolving hominid RNAs bind nuclear factor 90 and display tissue-restricted distribution. (PMID: 17855395) Parrott A.M. … Mathews M.B. (Nucleic Acids Res. 2007) 3 67

Products for SNAR-C1 Gene

Sources for SNAR-C1 Gene

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