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Aliases for SNAR-A12 Gene

Subcategory (RNA class) for SNAR-A12 Gene

non-coding RNA

Quality Score for this RNA gene is

2

Aliases for SNAR-A12 Gene

  • Small ILF3/NF90-Associated RNA A12 2 3
  • Small Nuclear ILF3/NF90-Associated RNA A12 2 3
  • Small NF90-Associated RNA AA53102747 3
  • SNAR-A53102747 3

External Ids for SNAR-A12 Gene

Previous GeneCards Identifiers for SNAR-A12 Gene

  • GC19U900871
  • GC19P048410

Summaries for SNAR-A12 Gene

GeneCards Summary for SNAR-A12 Gene

SNAR-A12 (Small ILF3/NF90-Associated RNA A12) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNAR-A12 Gene

Genomics for SNAR-A12 Gene

Regulatory Elements for SNAR-A12 Gene

Enhancers for SNAR-A12 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
- Elite enhancer/Elite enhancer-gene association

Enhancers around SNAR-A12 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNAR-A12 Gene

Chromosome:
19
Start:
47,907,678 bp from pter
End:
47,907,799 bp from pter
Size:
122 bases
Orientation:
Plus strand

Genomic View for SNAR-A12 Gene

Genes around SNAR-A12 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNAR-A12 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNAR-A12 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNAR-A12 Gene

Proteins for SNAR-A12 Gene

Post-translational modifications for SNAR-A12 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNAR-A12 Gene

Domains & Families for SNAR-A12 Gene

Gene Families for SNAR-A12 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SNAR-A12: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNAR-A12 Gene

Function for SNAR-A12 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNAR-A12 Gene

Localization for SNAR-A12 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNAR-A12 Gene

Pathways & Interactions for SNAR-A12 Gene

SuperPathways for SNAR-A12 Gene

No Data Available

Interacting Proteins for SNAR-A12 Gene

Gene Ontology (GO) - Biological Process for SNAR-A12 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNAR-A12 Gene

Drugs & Compounds for SNAR-A12 Gene

No Compound Related Data Available

Transcripts for SNAR-A12 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for SNAR-A12 Gene

No ASD Table

Relevant External Links for SNAR-A12 Gene

GeneLoc Exon Structure for
SNAR-A12
ECgene alternative splicing isoforms for
SNAR-A12

No data available for mRNA/cDNA for SNAR-A12 Gene

Expression for SNAR-A12 Gene

SOURCE GeneReport for Unigene cluster for SNAR-A12 Gene:

Hs.707967
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNAR-A12 Gene

Orthologs for SNAR-A12 Gene

No data available for Orthologs and Evolution for SNAR-A12 Gene

Paralogs for SNAR-A12 Gene

No data available for Paralogs for SNAR-A12 Gene

Variants for SNAR-A12 Gene

Sequence variations from dbSNP and Humsavar for SNAR-A12 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type
rs62129993 -- 47,905,941(+) AATCC(G/T)ACCAG upstream-variant-2KB
rs199937065 -- 47,905,936(+) AGTCG(A/C)ATCCT upstream-variant-2KB
rs200288256 -- 47,908,013(+) TATCT(A/C)AGCCT downstream-variant-500B
rs201215068 -- 47,906,721(+) CCCAC(A/T)GGGCC upstream-variant-2KB
rs182939739 -- 47,906,786(+) CAATA(C/T)GGCCG upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for SNAR-A12 Gene

Variant ID Type Subtype PubMed ID
dgv1792n106 CNV duplication 24896259
dgv2016e59 CNV duplication 20981092
dgv2017e59 CNV duplication 20981092
esv28347 CNV gain+loss 19812545
esv3360843 CNV duplication 20981092
esv3583447 CNV loss 25503493
esv3644559 CNV gain 21293372
esv991047 CNV gain 20482838
nsv1056164 CNV gain 25217958
nsv1058622 CNV gain 25217958
nsv1078446 CNV duplication 25765185
nsv1141335 CNV duplication 24896259
nsv178 CNV deletion 15895083
nsv2513 CNV deletion 18451855
nsv2515 CNV insertion 18451855
nsv428367 CNV gain+loss 18775914
nsv509748 CNV insertion 20534489
nsv953595 CNV duplication 24416366
nsv961230 CNV duplication 23825009
nsv9739 CNV gain+loss 18304495

Relevant External Links for SNAR-A12 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNAR-A12

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNAR-A12 Gene

Disorders for SNAR-A12 Gene

Relevant External Links for SNAR-A12

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNAR-A12

No disorders were found for SNAR-A12 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNAR-A12 Gene

Publications for SNAR-A12 Gene

  1. Novel rapidly evolving hominid RNAs bind nuclear factor 90 and display tissue-restricted distribution. (PMID: 17855395) Parrott A.M. … Mathews M.B. (Nucleic Acids Res. 2007) 3 65

Products for SNAR-A12 Gene

Sources for SNAR-A12 Gene

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