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Aliases for SNAP47-AS1 Gene

Subcategory (RNA class) for SNAP47-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SNAP47-AS1 Gene

  • SNAP47 Antisense RNA 1 2 3 5
  • SNAP47 Intronic Transcript 1 (Non-Protein Coding) 2 3
  • SNAP47 Antisense RNA 1 (Non-Protein Coding) 2 3
  • SNAP47-IT1 3

External Ids for SNAP47-AS1 Gene

Previous HGNC Symbols for SNAP47-AS1 Gene

  • SNAP47-IT1

Previous GeneCards Identifiers for SNAP47-AS1 Gene

  • GC01P227933
  • GC01M227932

Summaries for SNAP47-AS1 Gene

GeneCards Summary for SNAP47-AS1 Gene

SNAP47-AS1 (SNAP47 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SNAP47-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNAP47-AS1 Gene

Genomics for SNAP47-AS1 Gene

GeneHancer (GH) Regulatory Elements for SNAP47-AS1 Gene

Promoters and enhancers for SNAP47-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I227748 Enhancer 1.3 FANTOM5 ENCODE dbSUPER 550.8 -1.8 -1835 1.8 HDAC1 PKNOX1 ATF1 ZBTB40 ZNF766 E2F8 ATF7 CREM SMARCA5 ZBTB11 SNAP47-AS1 SNAP47 ZNF678 LOC105373289
GH01I227761 Enhancer 1.4 Ensembl ENCODE dbSUPER 0.4 -16.1 -16055 3.4 HDGF PKNOX1 ATF1 ARNT ARID4B SIN3A ZNF2 ZNF48 GLIS2 ZNF213 WNT3A SNAP47 SNAP47-AS1 LOC105373289
GH01I227765 Enhancer 1.1 FANTOM5 Ensembl ENCODE 0.4 -18.9 -18878 1.9 PKNOX1 CLOCK MAX FEZF1 ZIC2 CTBP1 GATA3 POLR2A FOS HES1 SNAP47 IBA57 SNAP47-AS1 LOC105373289
GH01I227749 Enhancer 0.5 dbSUPER 0.8 -3.3 -3252 1.1 FOXK2 L3MBTL2 BHLHE40 ZBTB11 ZIC2 MGA SNAP47 SNAP47-AS1 LOC105373289
GH01I227744 Enhancer 0.4 dbSUPER 0.8 +2.4 2385 0.3 KLF1 SCRT2 SNAP47-AS1 JMJD4 SNAP47
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around SNAP47-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SNAP47-AS1 Gene

Genomic Locations for SNAP47-AS1 Gene
chr1:227,743,831-227,747,191
(GRCh38/hg38)
Size:
3,361 bases
Orientation:
Minus strand
chr1:227,931,532-227,934,892
(GRCh37/hg19)

Genomic View for SNAP47-AS1 Gene

Genes around SNAP47-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNAP47-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNAP47-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for SNAP47-AS1 Gene

Proteins for SNAP47-AS1 Gene

Post-translational modifications for SNAP47-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNAP47-AS1 Gene

Domains & Families for SNAP47-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNAP47-AS1 Gene

Function for SNAP47-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNAP47-AS1 Gene

Localization for SNAP47-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNAP47-AS1 Gene

Pathways & Interactions for SNAP47-AS1 Gene

SuperPathways for SNAP47-AS1 Gene

No Data Available

Interacting Proteins for SNAP47-AS1 Gene

Gene Ontology (GO) - Biological Process for SNAP47-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNAP47-AS1 Gene

Drugs & Compounds for SNAP47-AS1 Gene

No Compound Related Data Available

Transcripts for SNAP47-AS1 Gene

mRNA/cDNA for SNAP47-AS1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNAP47-AS1 Gene

SNAP47 antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SNAP47-AS1 Gene

No ASD Table

Relevant External Links for SNAP47-AS1 Gene

GeneLoc Exon Structure for
SNAP47-AS1
ECgene alternative splicing isoforms for
SNAP47-AS1

Expression for SNAP47-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNAP47-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for SNAP47-AS1 Gene

This gene is overexpressed in Testis (x13.0).

SOURCE GeneReport for Unigene cluster for SNAP47-AS1 Gene:

Hs.668786
genes like me logo Genes that share expression patterns with SNAP47-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNAP47-AS1 Gene

Orthologs for SNAP47-AS1 Gene

Evolution for SNAP47-AS1 Gene

ENSEMBL:
Gene Tree for SNAP47-AS1 (if available)
TreeFam:
Gene Tree for SNAP47-AS1 (if available)

No data available for Orthologs for SNAP47-AS1 Gene

Paralogs for SNAP47-AS1 Gene

No data available for Paralogs for SNAP47-AS1 Gene

Variants for SNAP47-AS1 Gene

Additional Variant Information for SNAP47-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNAP47-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SNAP47-AS1 Gene

Disorders for SNAP47-AS1 Gene

Additional Disease Information for SNAP47-AS1

No disorders were found for SNAP47-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNAP47-AS1 Gene

Publications for SNAP47-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for SNAP47-AS1 Gene

Sources for SNAP47-AS1 Gene

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