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Aliases for SNAP25-AS1 Gene

Subcategory (RNA class) for SNAP25-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SNAP25-AS1 Gene

  • SNAP25 Antisense RNA 1 2 3 5
  • SNAP25 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for SNAP25-AS1 Gene

Summaries for SNAP25-AS1 Gene

GeneCards Summary for SNAP25-AS1 Gene

SNAP25-AS1 (SNAP25 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNAP25-AS1 Gene

Genomics for SNAP25-AS1 Gene

Regulatory Elements for SNAP25-AS1 Gene

Enhancers for SNAP25-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20G010074 1.3 Ensembl ENCODE dbSUPER 10.8 +292.1 292146 4.8 SIN3A RAD21 GATA2 ZNF366 ZSCAN5C FOS ZNF362 USF2 CEBPB PRDM6 ANKEF1 SNAP25-AS1 GC20M010116 ENSG00000276525
GH20G009989 0.6 Ensembl ENCODE 11.4 +379.6 379576 0.4 CEBPB SNAP25-AS1 LOC101929371 GC20P010021
GH20G010084 0.6 dbSUPER 8.4 +283.4 283439 2.3 HLF ATM FOSL1 ZNF366 ZNF512 FOS MAFK PRDM1 U2AF2 SNAP25-AS1 ANKEF1 GC20M010116 ENSG00000276525
GH20G010240 0.4 ENCODE 11.7 +127.9 127909 0.2 CTCF EP300 SNAP25-AS1 GC20M010220 GC20M010223 GC20P010311
GH20G010369 1.4 Ensembl ENCODE dbSUPER 0.7 -1.2 -1157 0.7 HNRNPUL1 HDGF TBP ATF1 BMI1 SLC30A9 ZSCAN5C ZNF207 ETV6 FOS SNAP25-AS1 SDAD1P2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNAP25-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNAP25-AS1 Gene

Chromosome:
20
Start:
10,021,978 bp from pter
End:
10,368,776 bp from pter
Size:
346,799 bases
Orientation:
Minus strand

Genomic View for SNAP25-AS1 Gene

Genes around SNAP25-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNAP25-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNAP25-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNAP25-AS1 Gene

Proteins for SNAP25-AS1 Gene

Post-translational modifications for SNAP25-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNAP25-AS1 Gene

Domains & Families for SNAP25-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNAP25-AS1 Gene

Function for SNAP25-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNAP25-AS1 Gene

Localization for SNAP25-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNAP25-AS1 Gene

Pathways & Interactions for SNAP25-AS1 Gene

SuperPathways for SNAP25-AS1 Gene

No Data Available

Interacting Proteins for SNAP25-AS1 Gene

Gene Ontology (GO) - Biological Process for SNAP25-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNAP25-AS1 Gene

Drugs & Compounds for SNAP25-AS1 Gene

No Compound Related Data Available

Transcripts for SNAP25-AS1 Gene

mRNA/cDNA for SNAP25-AS1 Gene

(4) Additional mRNA sequences :
(8) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SNAP25-AS1 Gene

SNAP25 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SNAP25-AS1 Gene

No ASD Table

Relevant External Links for SNAP25-AS1 Gene

GeneLoc Exon Structure for
SNAP25-AS1
ECgene alternative splicing isoforms for
SNAP25-AS1

Expression for SNAP25-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNAP25-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for SNAP25-AS1 Gene

This gene is overexpressed in Brain - Anterior cingulate cortex (BA24) (x4.9) and Brain - Frontal Cortex (BA9) (x4.5).

SOURCE GeneReport for Unigene cluster for SNAP25-AS1 Gene:

Hs.658178
genes like me logo Genes that share expression patterns with SNAP25-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNAP25-AS1 Gene

Orthologs for SNAP25-AS1 Gene

Evolution for SNAP25-AS1 Gene

ENSEMBL:
Gene Tree for SNAP25-AS1 (if available)
TreeFam:
Gene Tree for SNAP25-AS1 (if available)

No data available for Orthologs for SNAP25-AS1 Gene

Paralogs for SNAP25-AS1 Gene

No data available for Paralogs for SNAP25-AS1 Gene

Variants for SNAP25-AS1 Gene

Sequence variations from dbSNP and Humsavar for SNAP25-AS1 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs1000016489 -- 10,150,976(+) TGATA(A/G)GAAAA intron-variant
rs1000020204 -- 10,188,814(+) TAAAG(C/G)GGGAG intron-variant
rs1000024107 -- 10,190,016(+) ATAAG(C/G)AGAAG intron-variant
rs1000063240 -- 10,151,376(+) TGTAT(A/G)CTGCA intron-variant
rs1000091241 -- 10,085,135(+) TGTTT(A/T)TTTTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SNAP25-AS1 Gene

Variant ID Type Subtype PubMed ID
esv1236722 CNV deletion 17803354
esv1485898 CNV insertion 17803354
esv2674016 CNV deletion 23128226
esv2722172 CNV deletion 23290073
esv2722174 CNV deletion 23290073
esv3584443 CNV loss 25503493
esv3645202 CNV loss 21293372
esv3645203 CNV gain 21293372
esv3645204 CNV loss 21293372
esv3893286 CNV loss 25118596
esv994554 CNV deletion 20482838
nsv1063924 CNV gain 25217958
nsv1144933 CNV deletion 24896259
nsv180050 CNV deletion 16902084
nsv3288 CNV deletion 18451855
nsv3289 CNV deletion 18451855
nsv478153 CNV novel sequence insertion 20440878
nsv522874 CNV loss 19592680
nsv524009 CNV loss 19592680
nsv526862 CNV gain 19592680
nsv585414 CNV loss 21841781
nsv833918 CNV loss 17160897
nsv833919 CNV gain 17160897
nsv952985 CNV deletion 24416366

Relevant External Links for SNAP25-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNAP25-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNAP25-AS1 Gene

Disorders for SNAP25-AS1 Gene

Relevant External Links for SNAP25-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNAP25-AS1

No disorders were found for SNAP25-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNAP25-AS1 Gene

Publications for SNAP25-AS1 Gene

  1. Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan. (PMID: 23648065) Low S.K. … Nakamura Y. (Cancer Sci. 2013) 3 64
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64

Products for SNAP25-AS1 Gene

Sources for SNAP25-AS1 Gene

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