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Category Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21

GIFtS
-

SNAP25 Gene

protein-coding GIFtS: 70
GCID: GC20P010199

synaptosomal-associated protein, 25kDa

(Previous names: synaptosomal-associated protein, 25kD )
(Previous symbol: SNAP)

Explore 31 diseases affiliated with
SNAP25 via

MalaCards

our new
Human Malady Compendium

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc, ⁷Ensembl, ⁸DME, ⁹miRBase, and/or ¹⁰fRNAdb)
About This Section

Aliases
Synaptosomal-Associated Protein, 25kDa¹ ²		DJ1068F16.2¹
SNAP¹ ² ³		Super Protein² ³
SNAP-25¹ ² ³		SUP² ³
RIC-4¹ ²		Synaptosomal-Associated Protein, 25kD¹
RIC4¹ ²		Resistance To Inhibitors Of Cholinesterase 4 Homolog²
SEC9¹ ²		Synaptosomal-Associated Protein 25²
BA416N4.2¹		Synaptosomal-Associated 25 KDa Protein³

External Ids:	HGNC: 11132¹	Entrez Gene: 6616²	Ensembl: ENSG00000132639⁷	OMIM: 600322⁵	UniProtKB: P60880³

Export aliases for SNAP25 gene to outside databases

Previous GC identifers: GC20P010187 GC20P010194 GC20P010147 GC20P010151

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for SNAP25:

Synaptic vesicle membrane docking and fusion is mediated by SNAREs (soluble N-ethylmaleimide-sensitive factor

attachment protein receptors) located on the vesicle membrane (v-SNAREs) and the target membrane (t-SNAREs). The

assembled v-SNARE/t-SNARE complex consists of a bundle of four helices, one of which is supplied by v-SNARE and the

other three by t-SNARE. For t-SNAREs on the plasma membrane, the protein syntaxin supplies one helix and the protein

encoded by this gene contributes the other two. Therefore, this gene product is a presynaptic plasma membrane protein

involved in the regulation of neurotransmitter release. Two alternative transcript variants encoding different protein

isoforms have been described for this gene. (provided by RefSeq, Jul 2008)

UniProtKB/Swiss-Prot: SNP25_HUMAN, P60880

Function: t-SNARE involved in the molecular regulation of neurotransmitter release. May play an important role in the

synaptic function of specific neuronal systems. Associates with proteins involved in vesicle docking and membrane

fusion. Regulates plasma membrane recycling through its interaction with CENPF

Gene Wiki entry for SNAP25

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section

RefSeq DNA sequence:

NC_000020.10 NC_018931.1 NT_011387.8

Regulatory elements:

SABiosciences Regulatory transcription factor binding sites in the SNAP25 gene promoter:
p53 AP-1 ATF-2 c-Jun
Other transcription factors

SwitchGear Promoter luciferase reporter plasmid: SNAP25 promoter sequence

Search SABiosciences Chromatin IP Primers for SNAP25

Epigenetics:

QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat SNAP25

Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 20p12-p11.2 Ensembl cytogenetic band: 20p12.2 HGNC cytogenetic band: 20p12-p11.2

SNAP25 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
SNAP25 gene location

GeneLoc information about chromosome 20 GeneLoc Exon Structure

GeneLoc location for GC20P010199: view genomic region (about GC identifiers)

Start:	10,199,477 bp from pter	End:	10,288,066 bp from pter
Size:	88,590 bases	Orientation:	plus strand

(According to ¹UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to ²PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: SNP25_HUMAN, P60880 (See protein sequence)

Recommended Name: Synaptosomal-associated protein 25

Size: 206 amino acids; 23315 Da

Subunit: Part of the SNARE core complex containing SNAP25, VAMP2 and STX1A. This complex binds CPLX1. Interacts with

CENPF, TRIM9, RIMS1, SNAPIN, OTOF and HGS. Binds STXBP6. Found in a ternary complex with STX1A and VAMP8. Found in a

complex containing SYT1, SV2B and syntaxin-1 (By similarity). Associates with the BLOC-1 complex. Isoform 1 and

isoform 2 interact with BLOC1S6. Interacts with EQTN (By similarity)

Subcellular location: Cytoplasm, perinuclear region (By similarity). Cell membrane; Lipid-anchor. Cell junction,

synapse, synaptosome. Note=Membrane association requires palmitoylation. Expressed throughout cytoplasm, concentrating

at the perinuclear region (By similarity)

Miscellaneous: When cloned and expressed in Eschericia coli, where protein palmitoylation does not occur, Cys-85,

Cys-88, Cys-90 and Cys-92 in the protein sequence readily form an iron-sulfur cluster instead

5 PDB 3D structures from and Proteopedia for SNAP25:

1KIL (3D)

1XTG (3D)

3RK2 (3D)

3RK3 (3D)

3RL0 (3D)

Secondary accessions: B2RAU4 D3DW16 D3DW17 P13795 P36974 P70557 P70558 Q53EM2 Q5U0B5 Q8IXK3 Q96FM2

Q9BR45

Alternative splicing: 2 isoforms: P60880-1, P13795-1 P60880-2, P13795-2

Explore the universe of human proteins at neXtProt for SNAP25: NX_P60880

Post-translational modifications:

Palmitoylated. Cys-85 appears to be the main site, and palmitoylation is required for membrane association (By

similarity)¹

View modification sites using PhosphoSitePlus²

View neXtProt modification sites for NX_P60880

SNAP25 Protein expression data from MOPED and PaxDb: About this image

REFSEQ proteins (2 alternative transcripts):

NP_003072.2 NP_570824.1

ENSEMBL proteins:

ENSP00000254976 ENSP00000307341 ENSP00000400720

Reactome Protein details: P60880
Human Recombinant Protein Products for SNAP25:

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	Novus Biologicals SNAP25 Proteins Novus Biologicals SNAP25 Lysates
	Browse Sino Biological Recombinant Proteins
	ProSpec Recombinant Protein for SNAP25
	Uscn Proteins for SNAP25

Gene Ontology (GO): 5/25 cellular component terms (GO ID links to tree view) (see all 25): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005625	soluble fraction	--	--
GO:0005737	cytoplasm	ISS	--
GO:0005768	endosome	--	--
GO:0005802	trans-Golgi network	IEA	--
GO:0005886	plasma membrane	TAS	--

SNAP25 for ontologies About GeneDecksing

SNAP25 Antibody Products:

	EMD Millipore Mono- and Polyclonal Antibodies for the study of SNAP25
	R&D Systems Antibodies for SNAP25
	Cell Signaling Technology (CST) Antibodies for SNAP25 (SNAP-25)
	OriGene Antibodies (see all 13): SNAP25 OriGene Custom Antibody Services for SNAP25
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	ThermoFisher Antibody for SNAP25

Assay Products for SNAP25:

	Browse Kits and Assays available from EMD Millipore
	OriGene Custom Immunoassay Development Browse OriGene Fluorogenic Cell Assay Kits
	Browse R&D Systems for biochemical assays
	GenScript Custom Assay Services for SNAP25
	Browse Enzo Life Sciences for kits & assays
	Uscn ELISAs and CLIAs for SNAP25

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

SNAP25 for domains About GeneDecksing

2 InterPro domains/families:

IPR000727 T_SNARE_dom

IPR000928 SNAP-25

Graphical View of Domain Structure for InterPro Entry P60880

ProtoNet protein and cluster: P60880

1 Blocks protein family: IPB000928 SNAP-25 family

UniProtKB/Swiss-Prot: SNP25_HUMAN, P60880

Similarity: Belongs to the SNAP-25 family

Similarity: Contains 2 t-SNARE coiled-coil homology domains

(According to ¹UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or ²DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, Sirion Biotech, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, Sirion Biotech, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
About This Section

Molecular Function:

UniProtKB/Swiss-Prot Summary: SNP25_HUMAN, P60880

Function: t-SNARE involved in the molecular regulation of neurotransmitter release. May play an important role in the

synaptic function of specific neuronal systems. Associates with proteins involved in vesicle docking and membrane

fusion. Regulates plasma membrane recycling through its interaction with CENPF

Genatlas biochemistry entry for SNAP25:

synaptosomal-associated protein 1,25kDa,soluble N ethylmaleimide-sensitive factor-attachment protein receptor,SNARE

protein,palmitoylated in vivo for the binding to syntaxin

Gene Ontology (GO): 5/7 molecular function terms (GO ID links to tree view) (see all 7): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0000149	SNARE binding	IEA	--
GO:0005249	voltage-gated potassium channel activity	--	--
GO:0005515	protein binding	IPI	15603740
GO:0017022	myosin binding	--	--
GO:0017075	syntaxin-1 binding	--	--

SNAP25 for ontologies About GeneDecksing

Phenotypes:
15/16 MGI mutant phenotypes (inferred from 6 alleles) (MGI details for Snap25) (see all 16):

behavior/neurological	cardiovascular system	embryogenesis	endocrine/exocrine gland	growth/size
hearing/vestibular/ear	homeostasis/metabolism	integument	mortality/aging	muscle
nervous system	reproductive system	respiratory system	skeleton	taste/olfaction

SNAP25 for phenotypes About GeneDecksing

Animal Models:
Mouse knock-out Snap25^tm1Mcw for SNAP25

inGenious Targeting Laboratory - Customizable classic, inducible, and humanized mouse model solutions for SNAP25

miRNA Products:		OriGene 3'-UTR Clone (see all 2): SNAP25 Browse MicroRNA Expression Plasmids
		QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat SNAP25
		8/45 QIAGEN miScript miRNA Assays for microRNAs that regulate SNAP25 (see all 45):
		hsa-miR-4328 hsa-miR-429 hsa-miR-128 hsa-miR-301a hsa-miR-138-2* hsa-miR-374a* hsa-miR-34b hsa-miR-200b

		SwitchGear 3'UTR luciferase reporter plasmid: SNAP25 3' UTR sequence

Inhib. RNA Products:		Browse for Gene Knock-down Tools from EMD Millipore
		OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for SNAP25 (see all 7) OriGene shRNA RFP: SNAP25 OriGene siRNA: SNAP25
		QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat SNAP25
		Sirion Biotech Custom design and validation of potent shRNA sequences against SNAP25

Gene Editing Products:			DNA2.0 Custom Protein Engineering Service for SNAP25
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Clone Products:		Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore
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Cell Line Products:		GenScript Custom overexpressing Cell Line Services for SNAP25
		Search LifeMap BioReagents cell lines for SNAP25
		Sirion Biotech Customized stable knockdown cell line services for SNAP25 Sirion Biotech Customized inducible knockdown cell line services for SNAP25 Sirion Biotech Customized stable overexpressing cell line services for SNAP25 Sirion Biotech Customized inducible overexpressing cell line services for SNAP25

In Situ Assay
Products:

Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SNAP25

(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to ¹UniProtKB, ²MINT, ³I2D, and/or ⁴STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
About This Section

Unified GeneCards pathways - 5/17 super-pathways (see all 17) About this table

See pathways by source

Super-pathway

contained gene-specific pathways

Serotonin Neurotransmitter Release Cycle

Serotonin Neurotransmitter Release Cycle	1.00	Acetylcholine Neurotransmitter Release Cycle	0.53
Dopamine Neurotransmitter Release Cycle	1.00	Glutamate Neurotransmitter Release Cycle	0.42
Norepinephrine Neurotransmitter Release Cycle	0.60	Effects of Botulinum toxin	0.40

Clathrin-dependent protein traffic

	Clathrin-dependent protein traffic	1.00			wtCFTR and delta508-CFTR traffic / Generic schema (norm and CF)	0.37
	Transport_Clathrin-coated vesicle cycle	0.66

Normal wtCFTR traffic / Sorting endosome formation

Normal wtCFTR traffic / Sorting endosome formation

1.00

Delta508-CFTR traffic / Sorting endosome formation in CF

0.77

GABA synthesis, release, reuptake and degradation

GABA synthesis, release, reuptake and degradation

1.00

Neurotransmitter Release Cycle

0.53

Regulation of Insulin Secretion

Regulation of Insulin Secretion

1.00

Integration of energy metabolism

0.74

Pathway sources
See GeneCards unified pathways
Show all pathways

1 EMD Millipore Pathway for SNAP25

Clathrin-dependent protein traffic

1 Downloadable PowerPoint Slide of QIAGEN Pathway Central Maps for SNAP25

Epithelial Tight Junctions

1 Cell Signaling Technology (CST) Pathway for SNAP25

Neuroscience

4 GeneGo (Thomson Reuters) Pathways for SNAP25

	Normal wtCFTR traffic / Sorting endosome formation
	wtCFTR and delta508-CFTR traffic / Generic schema (norm and CF)
	Delta508-CFTR traffic / Sorting endosome formation in CF
	Transport Clathrin-coated vesicle cycle

4 BioSystems Pathways for SNAP25

	SIDS Susceptibility Pathways
	Insulin Signaling
	Synaptic Vesicle Pathway
	Effects of Botulinum toxin

5/17 Reactome Pathways for SNAP25 (see all 17)

	Proteolytic cleavage of SNARE complex proteins
	Transmission across Chemical Synapses
	Metabolism
	Regulation of Insulin Secretion
	Neuronal System

1 PharmGKB Pathway for SNAP25

Nicotine Pathway (Dopaminergic Neuron), Pharmacodynamics

1 Kegg Pathway (Kegg details for SNAP25):

SNARE interactions in vesicular transport

SNAP25 for pathways About GeneDecksing

Interactions:

SABiosciences Gene Network Central^TM Interacting Genes and Proteins Network for SNAP25

STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

5/85 Interacting proteins for SNAP25 (P60880^{1, 2, 3} ENSP00000254976⁴) via UniProtKB, MINT, STRING, and/or I2D (see all 85)

Interactant		Interaction Details
GeneCard	External ID(s)	Interaction Details
ITSN1	Q15811²^,³, ENSP00000370719⁴	MINT-2843882 MINT-2844026 I2D: score=4 STRING: ENSP00000370719
PRRT2	Q7Z6L0²^,³, ENSP00000351608⁴	MINT-63925 I2D: score=5 STRING: ENSP00000351608
ZDHHC17	Q8IUH5¹^,³, ENSP00000403397⁴	EBI-524785,EBI-524753 I2D: score=3 STRING: ENSP00000403397
STX11	O75558²^,³, ENSP00000356540⁴	MINT-63923 MINT-66857 I2D: score=6 STRING: ENSP00000356540
STX1A	Q16623²^,³, ENSP00000222812⁴	MINT-63924 I2D: score=11 STRING: ENSP00000222812

About this table

Gene Ontology (GO): 5/17 biological process terms (GO ID links to tree view) (see all 17): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0001504	neurotransmitter uptake	NAS	8760387
GO:0006112	energy reserve metabolic process	TAS	--
GO:0007268	synaptic transmission	TAS	--
GO:0007269	neurotransmitter secretion	TAS	--
GO:0007409	axonogenesis	--	--

SNAP25 for ontologies About GeneDecksing

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section

SNAP25 for compounds About GeneDecksing

Browse Small Molecules at EMD Millipore

Browse drugs & compounds from Enzo Life Sciences

Browse Tocris compounds for SNAP25

1 HMDB Compound for SNAP25 About this table

Compound	Synonyms	CAS #	PubMed Ids
Iron	Armco iron (see all 19)	7439-89-6	--

1 DrugBank Compound for SNAP25 About this table

Compound	Synonyms	CAS #	Type	Actions	PubMed Ids
Botulinum Toxin Type A	BoNT/A (see all 4)	93384-43-1	target	inhibitor	15484814 11752352 15749336 16831062 14644446 15222581

10/27 Novoseek chemical compound relationships for SNAP25 gene (see all 27) About this table

Compound	-log (P-Val)	Hits	PubMed IDs for Articles with Shared Sentences (# sentences)
toxin-s	48.4	2	17112344 (1), 19253949 (1)
calcium	48.2	75	14980208 (4), 11830673 (3), 19004828 (3), 8861939 (2) (see all 42)
mastoparan	45.8	4	9243624 (2), 11741293 (1)
n-ethylmaleimide	38	1	19748891 (1)
catecholamine	37.3	7	16445859 (3), 7556639 (2), 8611567 (1)
toxin a	35.7	1	7588600 (1)
mgatp	30.3	1	11861772 (1)
acetylcholine	29.3	7	9243624 (3), 8900203 (1), 10564353 (1), 10783705 (1)
atp	22.5	7	8702751 (3), 7957884 (1), 17886343 (1), 12914955 (1) (see all 5)
palmitate	20.8	7	11916915 (1), 15355980 (1), 8641455 (1), 9349529 (1)

Search CenterWatch for drugs/clinical trials and news about SNAP25 / SNP25

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from EMD Millipore,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, Sirion Biotech, microRNA from QIAGEN,
Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
About This Section

REFSEQ mRNAs for SNAP25 gene (2 alternative transcripts):

NM_003081.3 NM_130811.2

Unigene Cluster for SNAP25:

Synaptosomal-associated protein, 25kDa

Hs.167317 [show with all ESTs]

Unigene Representative Sequence: AK090857

5 Ensembl transcripts including schematic representations, and UCSC links where relevant:

ENST00000254976(uc002wnq.2 uc002wns.2) ENST00000304886(uc002wnr.2 uc010gca.2)

ENST00000430336 ENST00000492814 ENST00000495883

miRNA Products:		OriGene 3'-UTR Clone (see all 2): SNAP25 Browse OriGene MicroRNA Expression Plasmids
		QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat SNAP25
		8/45 QIAGEN miScript miRNA Assays for microRNAs that regulate SNAP25 (see all 45):
		hsa-miR-4328 hsa-miR-429 hsa-miR-128 hsa-miR-301a hsa-miR-138-2* hsa-miR-374a* hsa-miR-34b hsa-miR-200b

		SwitchGear 3'UTR luciferase reporter plasmid: SNAP25 3' UTR sequence

Inhib. RNA Products:		Browse for Gene Knock-down Tools from EMD Millipore
		OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for SNAP25 (see all 7) OriGene shRNA RFP: SNAP25 OriGene siRNA: SNAP25
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		Sirion Biotech Custom design and validation of potent shRNA sequences against SNAP25

Clone Products:		OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for SNAP25 (see all 4) OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for SNAP25 (see all 3) OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
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		SABiosciences RT² qPCR Primer Assay in human, mouse, rat SNAP25
		QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat SNAP25
		QIAGEN QuantiFast Probe-based Assays in human, mouse, rat SNAP25

Additional cDNA sequence:

AK090857.1 AK091322.1 AK094560.1 AK098347.1 AK098767.1 AK124279.1 AK223617.1 AK289647.1

AK314359.1 BC010647.1 BC047512.1 BT019684.1 BX647443.1 D21267.1 L19760.1 L19761.1

24/57 DOTS entries (see all 57):

DT.452947 DT.95090568 DT.91961969 DT.99937938 DT.100880485 DT.120816230 DT.100880478 DT.95090569

DT.100880489 DT.95317053 DT.120816273 DT.120816140 DT.120816130 DT.92460503 DT.100880491 DT.100880474

DT.120816066 DT.120816214 DT.409111 DT.120816248 DT.120816149 DT.100880479 DT.120816098 DT.120816257

24/634 AceView cDNA sequences (see all 634):

AA814482 CA947188 AA322597 CR619659 AA321762 BP360034 N89719 T28865

F09290 BM931038 BP360945 BX419259 BF959961 BP361201 CR593483 BP362782

NM_130811 AL536949 AA780417 BX441987 BX463624 AA211052 BM661933 AA322584

GeneLoc Exon Structure

5/11 Alternative Splicing Database (ASD) splice patterns (SP) for SNAP25 (see all 11) About this scheme

ExUns:	1a	·	1b	·	1c	·	1d	·	1e	^	2	^	3	^	4	^	5a	·	5b	^	6	^	7a	·	7b	^	8	^	9a	·	9b	·	9c	^	10a	·	10b	·	10c	^	11a	·	11b	^	12a	·	12b	·	12c	·	12d
SP1:											-		-		-										-								-		-
SP2:											-		-		-										-		-						-		-
SP3:											-		-		-										-				-		-		-		-
SP4:													-		-										-				-		-		-		-
SP5:											-		-		-										-		-

ECgene alternative splicing isoforms for SNAP25

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

SNAP25 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: TAATATTAAA

About this image

SNAP25 expression in embryonic tissues and stem cells
Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine About this table

5 LifeMap In Vivo Development Anatomical Compartments/Cells

Tissue

Anatomical Compartment

Cell

Category (developmental path)

Cartilage

Cervical Intervertebral Disc

Intervertebral Disc Nucleus Pulposus Cells

Cartilage

Ovary

Ovary

Eye

Skeletal Muscle

Expression:

Positive

Negative

Selective marker

Experimental details:

Curated

Microarrays

In-situ hybridization

Stem Cell Differentiation: 4 LifeMap Cells

Name

Category

PureStem™ endothelial progenitor 30-MV2-12 (Embryonic Progenitor Cell)

Blood, Endothelium

PureStem™ mesenchymal progenitor SM30 (Embryonic Progenitor Cell)

Adipose, Bone, Cartilage

PureStem™ progenitor EN13 (Embryonic Progenitor Cell)

PureStem™ progenitor EN7 (Embryonic Progenitor Cell)

See SNAP25 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for SNAP25

SOURCE GeneReport for Unigene cluster: Hs.167317

UniProtKB/Swiss-Prot: SNP25_HUMAN, P60880

Tissue specificity: Neurons of the neocortex, hippocampus, piriform cortex, anterior thalamic nuclei, pontine nuclei,

and granule cells of the cerebellum

SABiosciences Expression via Pathway-Focused PCR Arrays including SNAP25:

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Diabetes in human mouse rat

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In Situ
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(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD , ⁵MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or ⁶Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

This gene was present in the common ancestor of eukaryotes.

Orthologs for SNAP25 gene from 9/26 species (see all 26) About this table

Organism	Taxonomic classification	Gene	Description	Human Similarity	Orthology Type	Details
mouse (Mus musculus)	Mammalia	Snap25^{1 , 5}	synaptosomal-associated protein 25^{1, 5}	90.13(n)¹ 95.63(a)¹		2 (67.56 cM)⁵ 20614¹ NM_011428.3¹ NP_035558.1¹ 136713453⁵
chicken (Gallus gallus)	Aves	SNAP25¹	synaptosomal-associated protein, 25kDa	87.06(n) 95.63(a)		396444 NM_205458.1 NP_990789.1
lizard (Anolis carolinensis)	Reptilia	SNAP25⁶	--	97(a)	1 ↔ 1	1(134330069-134351746)
African clawed frog (Xenopus laevis)	Amphibia	snap25-prov²	synaptosomal-associated protein, 25kDa	80.4(n)		BC055981.1
zebrafish (Danio rerio)	Actinopterygii	snap25a²	synaptosome-associated protein 25a	79.27(n)		30712 BC063942.1
fruit fly (Drosophila melanogaster)	Insecta	Snap25³ Snap24¹	Golgi to plasma membrane transport t-SNARE³ Synapse protein 24¹	61(a) (best of 2)³ 62.73(n)¹ 59.11(a)¹		41193¹ NM_079574.2¹ NP_524298.1¹
worm (Caenorhabditis elegans)	Secernentea	Y22F5A.3³	SNAP-25 family	53(a)		V(10264006-10265432) --
thale cress (Arabidopsis thaliana)	eudicotyledons	SNAP30⁶ SNAP29⁶ (see all 3)	SNAP25 homologous protein SNAP29 (see all 3)	19(a) 18(a) (see all 3)	many ↔ many many ↔ many (see all 3)	1(4751581-4752844) 5(2515587-2516694)
rice (Oryza sativa)	Liliopsida	-- -- (see all 3)	SNARE domain containing protein, putative, express... SNARE domain containing protein, putative, express... (see all 3)	18(a) 18(a) (see all 3)	many ↔ many many ↔ many (see all 3)	3(5859717-5862894) 2(19438167-19440551)

ENSEMBL Gene Tree for SNAP25 (if available)
TreeFam Gene Tree for SNAP25 (if available)

(Paralogs according to ¹HomoloGene,
²Ensembl, and ³SIMAP, Pseudogenes according to ⁴Pseudogene.org Build 68)
About This Section

Paralogs for SNAP25 gene

SNAP23²

1 SIMAP similar gene for SNAP25 using alignment to 1 protein entry: SNP25_HUMAN:

SNAP23

SNAP25 for paralogs About GeneDecksing

(SNPs/Variants according to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

SNP ID	Valid	Clinical significance	Chr 20 pos	Sequence	#	AA Chg	Type	More	#	Pop	Total sample
Genomic Data					Transcription Related Data				Allele Frequencies
				--	--	--		--	--
rs73075447^1,2	C,F	--	10150335(+)	`GGGGCG/TTCTGT`	2	--	us2k¹		1	NA	120
rs6077691^1,2	C	--	10151030(+)	`AAGACC/AGAGTG`	2	--	us2k¹		2	NA	4
rs80007170^1,2	F	--	10153353(+)	`CCATGT/CATGTA`	2	--	int¹		1	WA	118
rs78697464^1,2	F	--	10153666(+)	`GGAGCG/AGGGGA`	2	--	int¹		1	WA	118
rs6039771^1,2	C	--	10153809(+)	`CATTTA/GTATCA`	2	--	int¹		2	WA	120
rs60988945^1,2	F	--	10153836(+)	`GAAAAA/CAAATC`	2	--	int¹		1	WA	118
rs77080897^1,2	F	--	10153851(+)	`AATTTC/GCCATT`	2	--	int¹		1	NA	120
rs8118466^1,2	C,F	--	10154071(+)	`TTTATT/CTTTAC`	2	--	int¹		1	NA	120
rs8124803^1,2	C	--	10154717(+)	`GTAACC/AAACAA`	2	--	int¹		2	NA	122
rs111822010^1,2	F	--	10155557(+)	`GAATGG/ATAGAA`	2	--	int¹		2	CSA	4

HapMap Linkage Disequilibrium report for SNAP25 (10199477 - 10288066 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for SNAP25: --

SABiosciences Cancer Mutation PCR Assays

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section

SNAP25 for disorders           About GeneDecksing

OMIM gene information: 600322    OMIM disorders: --

20/31 diseases for SNAP25 (see all 31):    About MalaCards

attention deficit hyperactivity disorder antisocial personality disorder major depressive disorder personality disorder

autism spectrum disorder botulism prion disease bipolar i disorder

coloboma bipolar disorder down syndrome tetanus

neurodegenerative disease paralysis tourette syndrome pituitary adenoma

insulinoma alzheimer's disease huntington's disease adhd

1 disease from the University of Copenhagen DISEASES database for SNAP25:

Attention deficit hyperactivity disorder

10/17 Novoseek disease relationships for SNAP25 gene (see all 17) About this table

Disease	-log (P-Val)	Hits	PubMed IDs for Articles with Shared Sentences (# sentences)
tetanus	74.3	11	7588600 (1), 15900706 (1), 9013335 (1), 7591680 (1) (see all 11)
botulism	71.6	2	10601242 (1), 8243676 (1)
attention-deficit hyperactivity disorder	42.8	6	10889551 (2), 19099826 (2), 17979583 (1), 18194215 (1)
paralysis	37.5	5	17976638 (1), 12381720 (1), 16195243 (1), 19176217 (1)
schizophrenia	32.6	26	19132710 (5), 18512733 (3), 18347838 (3), 11287790 (1) (see all 12)
insulinoma	29.6	4	11978639 (2), 9658409 (1), 11502551 (1)
coloboma	22.4	2	12759129 (1), 10889551 (1)
alzheimers disease	22.4	5	18194215 (1), 2075860 (1), 10344268 (1), 10343324 (1)
bipolar disorder	13.2	2	18726138 (1), 16542183 (1)
intoxication	9.89	1	15486565 (1)

Genetic Association Database (GAD): SNAP25
Human Genome Epidemiology (HuGE) Navigator: SNAP25 (44 documents)

Export disorders for SNAP25 gene to outside databases

(in PubMed. Associations of this gene to articles via ¹Entrez Gene, ²UniProtKB/Swiss-Prot, ³HGNC, ⁴GAD, ⁵PharmGKB, ⁶HMDB, ⁷DrugBank, ⁸UniProtKB/TrEMBL, ⁹ Novoseek, and/or ¹⁰fRNAdb)
About This Section

PubMed articles for SNAP25 gene, integrated from 9 sources (see all 427):
(articles sorted by number of sources associating them with SNAP25)

Utopia: connect your pdf to the dynamic
world of online information

The C terminus of SNAP25 is essential for Ca(2+)-depe ndent binding of synaptotagmin to SNARE complexes. (PubMed id 10692432)^{1, 3, 9} Gerona R.R....Martin T.F. (2000)
The SNAP-25 gene may be associated with clinical response and weight gain in antipsychotic treatment of schizophrenia. (PubMed id 15823421)^{1, 4, 9} Muller D.J....Kennedy J.L. (2005)
Insulin-responsive tissues contain the core complex protein SNAP-25 (synaptosomal-associated protein 25) A and B isoforms in addition to syntaxin 4 and synaptobrevins 1 and 2. (PubMed id 8760387)^{1, 2, 9} Jagadish M.N....Ward C.W. (1996)
Support for association between ADHD and two candidate genes: NET1 and DRD1. (PubMed id 15717291)^{1, 4} Bobb A.J....Rapoport J.L. (2005)
The SNAP25 gene as a susceptibility gene contributing to attention-deficit hyperactivity disorder. (PubMed id 16088329)^{1, 4} Feng Y....Barr C.L. (2005)
Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)^{1, 2} Ota T.... Sugano S. (2004)
Haplotype analysis of SNAP-25 suggests a role in the aetiology of ADHD. (PubMed id 15007392)^{1, 4} Mill J....Asherson P. (2004)
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)^{1, 2} Gerhard D.S....Malek J. (2004)
Biased paternal transmission of SNAP-25 risk alleles in attention-deficit hyperactivity disorder. (PubMed id 12660803)^{1, 4} Kustanovich V....Nelson S.F. (2003)
Association study of a SNAP-25 microsatellite and attention deficit hyperactivity disorder. (PubMed id 11920846)^{1, 4} Mill J....Asherson P. (2002)

(in PubMed, OMIM, and NCBI Bookshelf)
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		AND	OR
Aliases
Disorders
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section

Entrez Gene: 6616	HGNC: 11132	AceView: SNAP25	Ensembl:ENSG00000132639	euGenes: HUgn6616
ECgene: SNAP25	Kegg: 6616	H-InvDB: SNAP25

(According to HUGE)
About This Section

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

Name	Description
PharmGKB entry for SNAP25	Pharmacogenomics, SNPs, Pathways

Intellectual Property for SNAP25 gene
(Patent information from GeneIP, Licensable technologies from WIS Yeda, Salk, Tufts, IP news from LifeMap Sciences, Inc.)

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Patent Information for SNAP25 gene:
Search GeneIP for patents involving SNAP25

GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search

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SNAP25 Gene

synaptosomal-associated protein, 25kDa

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SNAP25 Gene

synaptosomal-associated protein, 25kDa

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