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Aliases for SNAI3-AS1 Gene

Subcategory (RNA class) for SNAI3-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SNAI3-AS1 Gene

  • SNAI3 Antisense RNA 1 2 3 5

External Ids for SNAI3-AS1 Gene

Previous GeneCards Identifiers for SNAI3-AS1 Gene

  • GC16P088730

Summaries for SNAI3-AS1 Gene

GeneCards Summary for SNAI3-AS1 Gene

SNAI3-AS1 (SNAI3 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNAI3-AS1 Gene

Genomics for SNAI3-AS1 Gene

Regulatory Elements for SNAI3-AS1 Gene

Enhancers for SNAI3-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
- Elite enhancer/Elite enhancer-gene association

Enhancers around SNAI3-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for SNAI3-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around SNAI3-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for SNAI3-AS1 Gene

Chromosome:
16
Start:
88,663,298 bp from pter
End:
88,687,186 bp from pter
Size:
23,889 bases
Orientation:
Plus strand

Genomic View for SNAI3-AS1 Gene

Genes around SNAI3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNAI3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNAI3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNAI3-AS1 Gene

Proteins for SNAI3-AS1 Gene

Post-translational modifications for SNAI3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNAI3-AS1 Gene

Domains & Families for SNAI3-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNAI3-AS1 Gene

Function for SNAI3-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNAI3-AS1 Gene

Localization for SNAI3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SNAI3-AS1 Gene

Pathways & Interactions for SNAI3-AS1 Gene

SuperPathways for SNAI3-AS1 Gene

No Data Available

Interacting Proteins for SNAI3-AS1 Gene

Gene Ontology (GO) - Biological Process for SNAI3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNAI3-AS1 Gene

Drugs & Compounds for SNAI3-AS1 Gene

No Compound Related Data Available

Transcripts for SNAI3-AS1 Gene

Unigene Clusters for SNAI3-AS1 Gene

SNAI3 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SNAI3-AS1 Gene

No ASD Table

Relevant External Links for SNAI3-AS1 Gene

GeneLoc Exon Structure for
SNAI3-AS1
ECgene alternative splicing isoforms for
SNAI3-AS1

Expression for SNAI3-AS1 Gene

mRNA expression in normal human tissues for SNAI3-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for SNAI3-AS1 Gene

This gene is overexpressed in Brain - Cortex (x4.0).

SOURCE GeneReport for Unigene cluster for SNAI3-AS1 Gene:

Hs.499548
genes like me logo Genes that share expression patterns with SNAI3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SNAI3-AS1 Gene

Orthologs for SNAI3-AS1 Gene

Evolution for SNAI3-AS1 Gene

ENSEMBL:
Gene Tree for SNAI3-AS1 (if available)
TreeFam:
Gene Tree for SNAI3-AS1 (if available)

No data available for Orthologs for SNAI3-AS1 Gene

Paralogs for SNAI3-AS1 Gene

No data available for Paralogs for SNAI3-AS1 Gene

Variants for SNAI3-AS1 Gene

Sequence variations from dbSNP and Humsavar for SNAI3-AS1 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs3924275 -- 88,671,156(+) CCTTG(A/G)GCCTG intron-variant
rs4074632 -- 88,672,556(+) AGAAG(C/T)GCCCT intron-variant
rs8064137 -- 88,665,330(+) attga(G/T)tactc intron-variant
rs4238678 -- 88,673,836(+) ATCCG(C/T)GAGGT intron-variant, nc-transcript-variant
rs4238679 -- 88,676,280(+) ggggt(C/G)ctttg intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SNAI3-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv3064n100 CNV gain 25217958
esv1063243 CNV insertion 17803354
esv2622567 CNV insertion 19546169
esv3582435 CNV loss 25503493
esv993602 CNV insertion 20482838
nsv1065973 CNV loss 25217958
nsv471113 CNV loss 18288195
nsv482951 CNV loss 15286789
nsv819188 CNV gain 19587683
nsv819380 CNV gain 19587683
nsv833325 CNV loss 17160897
nsv833327 CNV loss 17160897
nsv952070 CNV deletion 24416366

Relevant External Links for SNAI3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNAI3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNAI3-AS1 Gene

Disorders for SNAI3-AS1 Gene

Relevant External Links for SNAI3-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNAI3-AS1

No disorders were found for SNAI3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNAI3-AS1 Gene

Publications for SNAI3-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 65
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 65

Products for SNAI3-AS1 Gene

Sources for SNAI3-AS1 Gene

Content