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Aliases for SNAI3-AS1 Gene

Subcategory (RNA class) for SNAI3-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SNAI3-AS1 Gene

  • SNAI3 Antisense RNA 1 2 3 5

External Ids for SNAI3-AS1 Gene

Previous GeneCards Identifiers for SNAI3-AS1 Gene

  • GC16P088730

Summaries for SNAI3-AS1 Gene

GeneCards Summary for SNAI3-AS1 Gene

SNAI3-AS1 (SNAI3 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SNAI3-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SNAI3-AS1 Gene

Genomics for SNAI3-AS1 Gene

Regulatory Elements for SNAI3-AS1 Gene

Enhancers for SNAI3-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16H088698 1.8 FANTOM5 ENCODE dbSUPER 11.4 +39.5 39534 9.4 HDGF PKNOX1 MLX ARNT ARID4B SIN3A DMAP1 YY1 CBX5 ZNF143 RNF166 ZC3H18 ANKRD11 CTU2 ENSG00000268218 LINC00304 SNAI3-AS1 ENSG00000259877 BANP SNAI3
GH16H088649 1.4 ENCODE dbSUPER 14.5 -11.7 -11701 4.7 HDGF PKNOX1 FOXA2 MLX ARNT ZFP64 ARID4B SIN3A DMAP1 SLC30A9 ZC3H18 ANKRD11 SNAI3-AS1 ENSG00000268218 LINC00304 ENSG00000259877 CYBA BANP LOC101927863 RNF166
GH16H088662 1.1 ENCODE 16.2 -0.1 -92 2.4 HDGF PKNOX1 ARID4B SIN3A FEZF1 DMAP1 ZBTB7B YY1 ZNF143 FOS ZNF778 ZC3H18 SNAI3-AS1 ANKRD11 ENSG00000259877 CTU2 KLHDC4 BANP LINC00304 DPEP1
GH16H088685 1.1 ENCODE 13.5 +23.7 23657 3.6 HDGF PKNOX1 MLX ARNT ARID4B SIN3A DMAP1 CBX5 FOS SP3 SNAI3-AS1 SNORD68 RNF166 MVD CYBA RPL13 ANKRD11 ACSF3 CHMP1A APRT
GH16H088990 2 VISTA Ensembl ENCODE dbSUPER 4.9 +329.9 329919 4.6 HNRNPUL1 PKNOX1 ATF1 ARNT TCF12 ZNF766 GATA2 ELK1 ATF7 NCOA1 SNORD68 ANKRD11 RPL13 LOC100129697 AFG3L1P ZC3H18 ACSF3 CDK10 SNAI3-AS1 APRT
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SNAI3-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for SNAI3-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000089557 -198 2601 HDGF PKNOX1 ARID4B SIN3A FEZF1 DMAP1 ZBTB7B YY1 ZNF143 FOS

Genomic Locations for SNAI3-AS1 Gene

Genomic Locations for SNAI3-AS1 Gene
chr16:88,663,298-88,687,186
(GRCh38/hg38)
Size:
23,889 bases
Orientation:
Plus strand
chr16:88,729,706-88,753,594
(GRCh37/hg19)

Genomic View for SNAI3-AS1 Gene

Genes around SNAI3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SNAI3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SNAI3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SNAI3-AS1 Gene

Proteins for SNAI3-AS1 Gene

Post-translational modifications for SNAI3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SNAI3-AS1 Gene

Domains & Families for SNAI3-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SNAI3-AS1 Gene

Function for SNAI3-AS1 Gene

Phenotypes From GWAS Catalog for SNAI3-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SNAI3-AS1 Gene

Localization for SNAI3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SNAI3-AS1 Gene

Pathways & Interactions for SNAI3-AS1 Gene

SuperPathways for SNAI3-AS1 Gene

No Data Available

Interacting Proteins for SNAI3-AS1 Gene

Gene Ontology (GO) - Biological Process for SNAI3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SNAI3-AS1 Gene

Drugs & Compounds for SNAI3-AS1 Gene

No Compound Related Data Available

Transcripts for SNAI3-AS1 Gene

Unigene Clusters for SNAI3-AS1 Gene

SNAI3 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SNAI3-AS1 Gene

No ASD Table

Relevant External Links for SNAI3-AS1 Gene

GeneLoc Exon Structure for
SNAI3-AS1
ECgene alternative splicing isoforms for
SNAI3-AS1

Expression for SNAI3-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SNAI3-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for SNAI3-AS1 Gene

This gene is overexpressed in Brain - Cortex (x4.0).

SOURCE GeneReport for Unigene cluster for SNAI3-AS1 Gene:

Hs.499548
genes like me logo Genes that share expression patterns with SNAI3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SNAI3-AS1 Gene

Orthologs for SNAI3-AS1 Gene

Evolution for SNAI3-AS1 Gene

ENSEMBL:
Gene Tree for SNAI3-AS1 (if available)
TreeFam:
Gene Tree for SNAI3-AS1 (if available)

No data available for Orthologs for SNAI3-AS1 Gene

Paralogs for SNAI3-AS1 Gene

No data available for Paralogs for SNAI3-AS1 Gene

Variants for SNAI3-AS1 Gene

Sequence variations from dbSNP and Humsavar for SNAI3-AS1 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs1000147127 -- 88,672,916(+) ATTCC(C/T)AGAGA intron-variant
rs1000170032 -- 88,686,842(+) CGGAG(A/C)ATGAC nc-transcript-variant, upstream-variant-2KB
rs1000216828 -- 88,683,765(+) TTGGC(C/T)AGACT intron-variant
rs1000275398 -- 88,675,192(+) AATAG(A/C)AACCG intron-variant, nc-transcript-variant
rs1000306676 -- 88,679,066(+) CTGGG(A/T)CCTTG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SNAI3-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv952070 CNV deletion 24416366
nsv833327 CNV loss 17160897
nsv833325 CNV loss 17160897
nsv819380 CNV gain 19587683
nsv819188 CNV gain 19587683
nsv482951 CNV loss 15286789
nsv471113 CNV loss 18288195
nsv1065973 CNV loss 25217958
esv993602 CNV insertion 20482838
esv3582435 CNV loss 25503493
esv2622567 CNV insertion 19546169
esv1063243 CNV insertion 17803354
dgv3064n100 CNV gain 25217958

Relevant External Links for SNAI3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SNAI3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SNAI3-AS1 Gene

Disorders for SNAI3-AS1 Gene

Relevant External Links for SNAI3-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SNAI3-AS1

No disorders were found for SNAI3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SNAI3-AS1 Gene

Publications for SNAI3-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 60
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60

Products for SNAI3-AS1 Gene

Sources for SNAI3-AS1 Gene

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