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Aliases for SMYD3-IT1 Gene

Subcategory (RNA class) for SMYD3-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SMYD3-IT1 Gene

  • SMYD3 Intronic Transcript 1 2 3 5
  • SMYD3 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for SMYD3-IT1 Gene

Previous GeneCards Identifiers for SMYD3-IT1 Gene

  • GC00U933563
  • GC01M246485

Summaries for SMYD3-IT1 Gene

GeneCards Summary for SMYD3-IT1 Gene

SMYD3-IT1 (SMYD3 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SMYD3-IT1 Gene

Genomics for SMYD3-IT1 Gene

Regulatory Elements for SMYD3-IT1 Gene

Enhancers for SMYD3-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F246305 1.5 VISTA FANTOM5 0.3 +15.4 15440 2.1 HDAC1 ATF1 PKNOX1 ARNT TBL1XR1 ZBTB40 CHAMP1 GATA2 CREM ZBTB2 ZNF670-ZNF695 SMYD3-IT1 GC01M246190 RNU6-1283P
GH01F246324 0.5 Ensembl 0.8 -2.4 -2363 0.4 GATA3 JUND FOS SMYD3-IT1 ENSG00000207326 GC01M246427
GH01F246354 0.8 Ensembl ENCODE 0.3 -34.1 -34132 3.2 CTCF ZFHX2 RFX1 JUND ZBTB48 JUN NR2F2 SMYD3-IT1 ENSG00000207326 GC01M246427
GH01F246267 0.8 ENCODE 0.2 +54.2 54166 1.4 ESRRA HINFP DDX20 ZNF175 PTRF ZNF644 ZNF316 MAFK ZNF639 RFX1 SMYD3-IT1 GC01M246190 RNU6-1283P
GH01F246425 1.4 FANTOM5 Ensembl ENCODE 0.1 -103.0 -103005 0.9 HDAC1 PKNOX1 ATF1 TBL1XR1 GATA2 FOS CREM NCOA1 ZEB2 MBD2 ENSG00000207326 GC01M246427 SMYD3-IT1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SMYD3-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Location for SMYD3-IT1 Gene

Chromosome:
1
Start:
246,321,663 bp from pter
End:
246,322,438 bp from pter
Size:
776 bases
Orientation:
Minus strand

Genomic View for SMYD3-IT1 Gene

Genes around SMYD3-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SMYD3-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SMYD3-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for SMYD3-IT1 Gene

Proteins for SMYD3-IT1 Gene

Post-translational modifications for SMYD3-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SMYD3-IT1 Gene

Domains & Families for SMYD3-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SMYD3-IT1 Gene

Function for SMYD3-IT1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SMYD3-IT1 Gene

Localization for SMYD3-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SMYD3-IT1 Gene

Pathways & Interactions for SMYD3-IT1 Gene

SuperPathways for SMYD3-IT1 Gene

No Data Available

Interacting Proteins for SMYD3-IT1 Gene

Gene Ontology (GO) - Biological Process for SMYD3-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SMYD3-IT1 Gene

Transcripts for SMYD3-IT1 Gene

mRNA/cDNA for SMYD3-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SMYD3-IT1 Gene

No ASD Table

Relevant External Links for SMYD3-IT1 Gene

GeneLoc Exon Structure for
SMYD3-IT1
ECgene alternative splicing isoforms for
SMYD3-IT1

Expression for SMYD3-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SMYD3-IT1 Gene

genes like me logo Genes that share expression patterns with SMYD3-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SMYD3-IT1 Gene

Orthologs for SMYD3-IT1 Gene

Evolution for SMYD3-IT1 Gene

ENSEMBL:
Gene Tree for SMYD3-IT1 (if available)
TreeFam:
Gene Tree for SMYD3-IT1 (if available)

No data available for Orthologs for SMYD3-IT1 Gene

Paralogs for SMYD3-IT1 Gene

No data available for Paralogs for SMYD3-IT1 Gene

Variants for SMYD3-IT1 Gene

Relevant External Links for SMYD3-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SMYD3-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for SMYD3-IT1 Gene

Disorders for SMYD3-IT1 Gene

No disorders were found for SMYD3-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for SMYD3-IT1 Gene

Publications for SMYD3-IT1 Gene

  1. [IMAGE: molecular integration of the analysis of the human genome and its expression]. (PMID: 7757816) Auffray C. … Lamy B. (C. R. Acad. Sci. III, Sci. Vie 1995) 3 64
  2. Gene-based sequence-tagged-sites (STSs) as the basis for a human gene map. (PMID: 7670491) Berry R. … Sikela J.M. (Nat. Genet. 1995) 3 64

Products for SMYD3-IT1 Gene

Sources for SMYD3-IT1 Gene

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