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GIFtS

SMR3B Gene

protein-coding   GIFtS: 45
GCID: GC04P071283

Submaxillary Gland Androgen Regulated Protein 3B

(Previous names: proline rich 3, submaxillary gland androgen regulated protein...)
(Previous symbol: PROL3)
  See related disease
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
Submaxillary Gland Androgen Regulated Protein 3B1 2     SMR1B2 5
PROL31 2 3     Submaxillary Gland Androgen Regulated Protein 3 Homolog B (Mouse)1
PBII2 3 5     P-B2
PRL32 3 5     Salivary Proline-Rich Protein2
Proline Rich 31 2     Submaxillary Gland Androgen Regulated Protein 3 Homolog B2
Proline-Rich Peptide P-B2 3     Submaxillary Gland Androgen-Regulated Protein 3B2
Proline-Rich Protein 32 3     

External Ids:    HGNC: 173261   Entrez Gene: 108792   Ensembl: ENSG000001712017   OMIM: 6115935   UniProtKB: P028143   

Export aliases for SMR3B gene to outside databases

Previous GC identifers: GC04P071430 GC04P067051


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

GeneCards Summary for SMR3B Gene: 
SMR3B (submaxillary gland androgen regulated protein 3B) is a protein-coding gene. Diseases associated with SMR3B include pancytopenia. GO annotations related to this gene include molecular_function. An important paralog of this gene is SMR3A.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000004.11  NC_018915.2  NT_022778.16  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the SMR3B gene promoter:
         PPAR-gamma1   FOXD3   PPAR-gamma2   LyF-1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidSMR3B promoter sequence
   Search SABiosciences Chromatin IP Primers for SMR3B

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat SMR3B


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 4q13.3   Ensembl cytogenetic band:  4q13.3   HGNC cytogenetic band: 4q13.3

SMR3B Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
SMR3B gene location

GeneLoc information about chromosome 4         GeneLoc Exon Structure

GeneLoc location for GC04P071283:  view genomic region     (about GC identifiers)

Start:
71,235,810 bp from pter      End:
71,255,961 bp from pter
Size:
20,152 bases      Orientation:
plus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: SMR3B_HUMAN, P02814 (See protein sequence)
Recommended Name: Submaxillary gland androgen-regulated protein 3B precursor  
Size: 79 amino acids; 8188 Da
Subcellular location: Secreted
Secondary accessions: B7ZMG7 Q9UBN0 Q9UCT0

Explore the universe of human proteins at neXtProt for SMR3B: NX_P02814

Explore proteomics data for SMR3B at MOPED 

Post-translational modifications:

  • UniProtKB: P-A and D1A are probably degradation products of P-B
  • View neXtProt modification sites for NX_P02814

  • SMR3B Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

    SMR3B Protein Expression
    REFSEQ proteins: NP_006676.1  
    ENSEMBL proteins: 
     ENSP00000423138   ENSP00000302400  

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    Gene Ontology (GO): 1 cellular component term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005615extracellular space TAS7982889

    SMR3B for ontologies           About GeneDecksing



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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    1 InterPro protein domain:
     IPR026288 SMR

    Graphical View of Domain Structure for InterPro Entry P02814

    ProtoNet protein and cluster: P02814

    UniProtKB/Swiss-Prot: SMR3B_HUMAN, P02814
    Similarity: Belongs to the PROL1/PROL3 family


    SMR3B for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
    About This Section

         Gene Ontology (GO): 1 molecular function term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003674molecular_function ND--
         
    SMR3B for ontologies           About GeneDecksing


    Phenotypes:
         1 GenomeRNAi human phenotype for SMR3B:
     Increased gamma-H2AX phosphory 

    Animal Models:
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    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
    About This Section




    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for SMR3B

    STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

    5/29 Interacting proteins for SMR3B (P028143 ENSP000003024004) via UniProtKB, MINT, STRING, and/or I2D (see all 29)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    MUC7Q8TAX73, ENSP000003020214I2D: score=1 STRING: ENSP00000302021
    EIF4A2Q142403I2D: score=1 
    ATP1B3ENSP000002863714STRING: ENSP00000286371
    TNPO2ENSP000003973794STRING: ENSP00000397379
    UBE4AENSP000002521084STRING: ENSP00000252108
    About this table

    Gene Ontology (GO): 1 biological process term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0008150biological_process ND--

    SMR3B for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for SMR3B

    Search CenterWatch for drugs/clinical trials and news about SMR3B

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for SMR3B gene: 
    NM_006685.3  

    Unigene Cluster for SMR3B:

    Submaxillary gland androgen regulated protein 3B
    Hs.650650  [show with all ESTs]
    Unigene Representative Sequence: CB984437
    3 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000504825 ENST00000304915(uc011cas.2 uc003hfh.3) ENST00000508027

    miRNA
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    2 QIAGEN miScript miRNA Assays for microRNAs that regulate SMR3B:
    hsa-miR-4263 hsa-miR-490-3p
    SwitchGear 3'UTR luciferase reporter plasmidSMR3B 3' UTR sequence
    Inhib. RNA
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                         Customized lentivirus expression plasmids for stable overexpression of SMR3B 
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      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat SMR3B
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    Additional mRNA sequence: 

    BC015327.1 BC094707.1 BC144529.1 D29833.2 

    15 DOTS entries:

    DT.100671853  DT.100681404  DT.121249580  DT.100893690  DT.100683735  DT.101982742  DT.441491  DT.100893688 
    DT.100893695  DT.121249353  DT.121249498  DT.121249589  DT.121249307  DT.121249524  DT.100893691 

    24/310 AceView cDNA sequences (see all 310):

    BP335048 BX487855 BP334673 CB957080 CB957829 BP334451 BP333897 BP334001 
    NM_012390 CB958637 CB955868 BX487477 BP334616 BP333734 BX102141 BP334508 
    CB957827 CD722957 BP334246 CB984731 CB958565 CB957874 BX487017 BP333762 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    SMR3B expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: CAGACATAAC
    SMR3B Expression
    About this image


    See SMR3B Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for SMR3B

    SOURCE GeneReport for Unigene cluster: Hs.650650

    UniProtKB/Swiss-Prot: SMR3B_HUMAN, P02814
    Tissue specificity: Secreted into saliva by submaxillary gland. Not expressed in heart, brain, lung, liver,
    skeletal muscle, Kidney, pancreas or placenta

        SABiosciences Custom PCR Arrays for SMR3B
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SMR3B

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section
      --

    ENSEMBL Gene Tree for SMR3B (if available)
    TreeFam Gene Tree for SMR3B (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for SMR3B gene
    SMR3A2  
    2 SIMAP similar genes for SMR3B using alignment to 2 protein entries:     SMR3B_HUMAN (see all proteins):
    SMR3A    PROL1

    SMR3B for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/238 SNPs in SMR3B are shown (see all 238)    About this table     
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 4 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1902471501,2
    --71246818(+) TCTTCA/GCTGAT 1 -- us2k10--------
    rs791942001,2
    F--71246929(+) GCAGTG/AAAACT 1 -- us2k11Minor allele frequency- A:0.03WA 118
    rs728527081,2
    C--71246943(+) ACAAAG/TTAAAT 1 -- us2k11Minor allele frequency- T:0.50WA 2
    rs68129761,2
    C,F,H--71247051(+) CTTAGA/CTATGC 1 -- us2k116Minor allele frequency- N:0.00EA NA WA CSA 589
    rs1815633071,2
    --71247117(+) AGGAGA/GGAGGG 1 -- us2k10--------
    rs748428971,2
    --71247128(+) AGGGAA/GGGAAG 1 -- us2k10--------
    rs1459393671,2
    C--71247166(+) GGAGA-/GAG   
      GGGAGG
    GAGGG
    1 -- us2k10--------
    rs607205371,2
    C--71247185(+) GAGGG-/AGG   
      GGAGGG
    GAGGG
    2 -- us2k1 cds11Minor allele frequency- AGGGGAGGG:0.00NA 2
    rs131044181,2
    H--71247208(+) aaggaA/TggTTG 1 -- us2k1 trp34Minor allele frequency- T:0.00NS EA 420
    rs1874627621,2
    --71247210(+) GGAAGG/TTTGGT 1 -- us2k10--------

    HapMap Linkage Disequilibrium report for SMR3B (71235810 - 71255961 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 10/13 variations for SMR3B (see all 13):    About this table     
    Variant IDTypeSubtypePubMed ID
    dgv955e199CNV Deletion23128226
    nsv822613CNV Loss20364138
    dgv5631n71CNV Loss21882294
    nsv470046CNV Loss18288195
    nsv879467CNV Loss21882294
    nsv10525CNV Loss18304495
    nsv461554CNV Loss19166990
    dgv321n21CNV Loss19592680
    dgv187e55CNV Loss17911159
    nsv829964CNV Gain17160897

    SABiosciences Cancer Mutation PCR Assays
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
    OMIM gene information: 611593    OMIM disorders: --

    2 diseases for SMR3B:    About MalaCards
    pancytopenia    


    SMR3B for disorders           About GeneDecksing


    Export disorders for SMR3B gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for SMR3B gene, integrated from 9 sources (see all 11):
    (articles sorted by number of sources associating them with SMR3B)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Molecular cloning and sequence analysis of cDNA coding for the precursor of the human salivary proline-rich peptide P-B. (PubMed id 7982889)1, 2, 3, 9 Isemura S. and Saito E. (1994)
    2. Isolation and amino acid sequences of proline-rich peptides of human whole saliva. (PubMed id 479131)1, 2, 3 Isemura S....Sanada K. (1979)
    3. Nucleotide sequence of gene PBII encoding salivary proline-rich protein P-B. (PubMed id 10731710)1, 2, 9 Isemura S. (2000)
    4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    5. Large-scale purification and characterization of the major phosphoproteins and mucins of human submandibular-sublingual saliva. (PubMed id 1747107)1, 2 Ramasubbu N....Levine M.J. (1991)
    6. A cohesin-RAD21 interactome. (PubMed id 22145905)1 Panigrahi A.K....Pati D. (2012)
    7. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
    8. Structural features contributing to complex formation between glycogen phosphorylase and phosphorylase kinase. (PubMed id 10423233)9 Xu Y.H. and Carlson G.M. (1999)
    9. Tissue distribution and nucleotide sequence of bovine mRNA for salivary proline-rich protein P-B. (PubMed id 15353243)9 Isemura S....Sanada K. (2004)
    10. Signaling pathway triggered by a short immunomodulating peptide on human monocytes. (PubMed id 9028864)9 Lopez-Zabalza M.J....Santiago E. (1997)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 10879 HGNC: 17326 AceView: PROL3 Ensembl:ENSG00000171201 euGenes: HUgn10879
    ECgene: SMR3B H-InvDB: SMR3B

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for SMR3B Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for SMR3B gene:
    Search GeneIP for patents involving SMR3B

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Sirion Biotech, Cell lines from GenScript, and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
    About This Section

     
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    GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 3 Nov 2013 , 7 Nov 2013 , 23 Jan 2014

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    Category
    (GIFtS: 73)
    transforming growth factor, beta 1
    GIFtS Group
    The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 


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