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SMR3A Gene

protein-coding   GIFtS: 38
GCID: GC04P071226

Submaxillary Gland Androgen Regulated Protein 3A

(Previous names: proline rich 5 (salivary), submaxillary gland androgen regulated...)
(Previous symbol: PROL5)
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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Submaxillary Gland Androgen Regulated Protein 3A1 2     P-B12
PROL51 2 3     PRL52
Proline Rich 5 (Salivary)1 2     Proline- Rich Protein 52
Proline-Rich Protein 52 3     Protein Homologous To Salivary Proline-Rich Protein P-B2
Proline-Rich Protein PBI2 3     Submaxillary Gland Androgen Regulated Protein 3 Homolog A2
PBI2 3     Submaxillary Gland Androgen-Regulated Protein 3A2
Submaxillary Gland Androgen Regulated Protein 3 Homolog A (Mouse)1     

External Ids:    HGNC: 192161   Entrez Gene: 269522   Ensembl: ENSG000001092087   UniProtKB: Q999543   

Export aliases for SMR3A gene to outside databases

Previous GC identifers: GC04P071410 GC04U900478 GC04P071261 GC04P067028


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for SMR3A Gene:
SMR3A (submaxillary gland androgen regulated protein 3A) is a protein-coding gene. An important paralog of this gene is SMR3B.

UniProtKB/Swiss-Prot: SMR3A_HUMAN, Q99954
Function: May play a role in protection or detoxification (By similarity)




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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Regulatory elements:
   Regulatory transcription factor binding sites in the SMR3A gene promoter:
         HFH-3   HNF-4alpha2   CUTL1   HNF-4alpha1   FOXL1   FOXI1   POU2F1   FOXO4   POU2F1a   Cart-1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidSMR3A promoter sequence
   Search Chromatin IP Primers for SMR3A

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat SMR3A


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 4q13.3   Ensembl cytogenetic band:  4q13.3   HGNC cytogenetic band: 4q13.3

SMR3A Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
SMR3A gene location

GeneLoc information about chromosome 4         GeneLoc Exon Structure

GeneLoc location for GC04P071226:  view genomic region     (about GC identifiers)

Start:
71,226,478 bp from pter      End:
71,232,875 bp from pter
Size:
6,398 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., and/or eBioscience,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., and/or eBioscience, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: SMR3A_HUMAN, Q99954 (See protein sequence)
Recommended Name: Submaxillary gland androgen-regulated protein 3A precursor  
Size: 134 amino acids; 14048 Da

Explore the universe of human proteins at neXtProt for SMR3A: NX_Q99954

Explore proteomics data for SMR3A at MOPED


See SMR3A Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

REFSEQ proteins: NP_036522.3  
ENSEMBL proteins: 
 ENSP00000226460  

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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ProtoNet protein and cluster: Q99954

UniProtKB/Swiss-Prot: SMR3A_HUMAN, Q99954
Similarity: Belongs to the PROL1/PROL3 family


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Molecular Function:

     UniProtKB/Swiss-Prot Summary: SMR3A_HUMAN, Q99954
Function: May play a role in protection or detoxification (By similarity)

Animal Models:

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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Subcellular locations from UniProtKB/Swiss-Prot
SMR3A_HUMAN, Q99954: Secreted (Potential)
Subcellular locations from COMPARTMENTS: 

CompartmentConfidence
extracellular4
mitochondrion1

Gene Ontology (GO): 1 cellular component term:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005576extracellular region IEA--

Find genes that share ontologies with SMR3A           About GenesLikeMe


(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for SMR3A
Interactions:

    Search GeneGlobe Interaction Network for SMR3A

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Tocris compounds for SMR3A



(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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REFSEQ mRNAs for SMR3A gene: 
NM_012390.3  

1 Ensembl transcript including schematic representation, and UCSC links where relevant:
ENST00000226460(uc003hfg.1)
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GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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SMR3A expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: --
SMR3A Expression
About this image

SMR3A Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

SMR3A Protein Expression
    Custom PCR Arrays for SMR3A
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In Situ
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Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for SMR3A

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of human and chimp.

Orthologs for SMR3A gene from 1 species (see representative species )    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
chimpanzee
(Pan troglodytes)
Mammalia SMR3A6
submaxillary gland androgen regulated protein 3A
96(a)
1 ↔ 1
4(59796733-59801739)


ENSEMBL Gene Tree for SMR3A (if available)
TreeFam Gene Tree for SMR3A (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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Paralogs for SMR3A gene
SMR3B2  
1 SIMAP similar gene for SMR3A using alignment to 2 protein entries:     SMR3A_HUMAN (see all proteins):
SMR3B

Find genes that share paralogs with SMR3A           About GenesLikeMe



(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Selected SNPs for SMR3A (see all 209)    About this table                                 

Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 4 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs283774871,2
C,F--71224512(+) GACTCA/GACTTA 1 -- us2k1 tfbs32Minor allele frequency- G:0.05WA 120
rs119390161,2
C,F,H--71224580(+) CACTAA/CCAATA 1 -- us2k16Minor allele frequency- C:0.26WA NA 246
rs1919224641,2
--71224654(+) TCTAGC/TAAGTA 1 -- us2k10--------
rs119399831,2
C,F,H--71224673(+) AGATCT/CTTTAA 1 -- us2k19Minor allele frequency- C:0.18NS EA NA WA 648
rs351320651,2
C--71224683(+) AAGCC-/ATATAAG 1 -- us2k10--------
rs724957421,2
C--71224684(+) CCATA-/TAAGTTA 1 -- us2k10--------
rs117256371,2
C,F,H--71224815(+) GCCAGC/TGTTCA 1 -- us2k15Minor allele frequency- T:0.18WA NA 246
rs1847264611,2
--71224910(+) CAAAAC/TAAGAA 1 -- us2k10--------
rs1151876241,2
C,F--71224922(+) GAAGAG/TACATT 1 -- us2k11Minor allele frequency- T:0.03WA 118
rs1512632731,2
--71224925(+) GAGACA/TTTCAT 1 -- us2k10--------

HapMap Linkage Disequilibrium report for SMR3A (71226478 - 71232875 bp)

Structural Variations
     Database of Genomic Variants (DGV) Selected variations for SMR3A (see all 17):    About this table    
Variant IDTypeSubtypePubMed ID
dgv955e199CNV Deletion23128226
nsv879467CNV Loss21882294
nsv10525CNV Loss18304495
nsv461554CNV Loss19166990
nsv879468CNV Loss21882294
dgv187e55CNV Loss17911159
dgv5631n71CNV Loss21882294
nsv822613CNV Loss20364138
nsv470046CNV Loss18288195
esv34954CNV Loss17911159

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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1 disease from the University of Copenhagen DISEASES database for SMR3A:
Scheuermann's disease

Find genes that share disorders with SMR3A           About GenesLikeMe

Genetic Association Database (GAD): SMR3A

Export disorders for SMR3A gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for SMR3A gene integrated from 10 sources:
(articles sorted by number of sources associating them with SMR3A)
    Utopia: connect your pdf to the dynamic
world of online information

  1. Nucleotide sequence of gene PBI encoding a protein homologous to salivary proline-rich protein P-B. (PubMed id 9354371)1, 2, 3, 9 Isemura S. and Saitoh E. (J. Biochem. 1997)
  2. hSMR3A as a marker for patients with erectile dysfunction. (PubMed id 17512016)1, 3 Tong Y....Davies K.P. (J. Urol. 2007)
  3. The opiorphin gene (ProL1) and its homologues function in erectile physiology. (PubMed id 18410445)1 Tong Y....Davies K. (BJU Int. 2008)
  4. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PubMed id 15815621)2 Hillier L.W.... Wilson R.K. (Nature 2005)
  5. The lacrimal gland transcriptome is an unusually rich source of rare and poorly characterized gene transcripts. (PubMed id 15851553)1 Ozyildirim A.M....Laurie G.W. (amp 2005)
  6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 26952 HGNC: 19216 Ensembl:ENSG00000109208 euGenes: HUgn26952 ECgene: SMR3A
H-InvDB: SMR3A

(According to HUGE)
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  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for SMR3A Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for SMR3A gene:
Search GeneIP for patents involving SMR3A

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, eBioscience, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
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GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014 , 21 Aug 2014 , 8 Sep 2014

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