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Aliases & Descriptions for SMO
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| Gx 2 | | SMOH 2, 3, 5 | | smoothened 2 |
| | | Descriptions |
|---|
| Gx protein 3 | | seven transmembrane helix receptor 2 | | smoothened (Drosophila) homolog 1 | | smoothened homolog (Drosophila) 2 |
|
| | Search outside databases for aliases for SMO genePrevious GC identifers: GC07P127306 GC07P128368 GC07P128382 GC07P128422 |
Summaries for SMO(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| UniProtKB/Swiss-Prot: SMO_HUMAN, Q99835Function: G protein-coupled receptor that probably associates with the patched protein (PTCH) to transduce the hedgehog's proteins signal. Binding of sonic hedgehog (SHH) to its receptor patched is thought to prevent normal inhibition by patched of smoothened (SMO)Gene Wiki entry for SMO (Smoothened) |
Genomic Location for SMO
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the SMO gene 
Entrez Gene cytogenetic band: 7q32.3 Ensembl cytogenetic band: 7q32.1 HGNC cytogenetic band: 7q32.1SMO Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 7 GeneLoc Exon Structure GeneLoc location for GC07P128615:
(about GC identifiers)
Start:
|
128,615,949 bp from pter |
End:
|
128,640,622 bp from pter |
Size:
|
24,674 bases |
Orientation:
|
plus strand |
1 alternative location:
| Chr7+,CRA_TCAG 128,212,668-128,237,345 |
RefSeq DNA sequence:- NC_000007.12 NT_007933.14 NT_079596.2
| Proteins for SMO
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: SMO_HUMAN, Q99835 (See
protein sequence)Recommended Name: Smoothened homolog precursor Size: 787 amino acids; 86397 Da
Subcellular location: Membrane; Multi-pass membrane proteinREFSEQ proteins: NP_005622.1
ENSEMBL proteins: ENSP00000249373
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
3 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for SMO: Assays for SMO: | Protein
Domains/ Families for SMO(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry Q99835
ProtoNet protein and cluster: Q99835 1 Blocks protein family: IPB000539 Frizzled protein signature
UniProtKB/Swiss-Prot: SMO_HUMAN, Q99835Similarity: Belongs to the G-protein coupled receptor Fz/Smo familySimilarity: Contains 1 FZ (frizzled) domain | Gene Function for SMO
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_005631
Applied Biosystems Silencer® siRNAs for SMO
Sigma-Aldrich siRNA and siRNA Panels for SMO  Sigma-Aldrich shRNA Panels and shRNA for SMO  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_005631                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_005631                                  untagged cDNA clone in CMV expression vector: NM_005631 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_005631
UniProtKB/Swiss-Prot: SMO_HUMAN, Q99835Function: G protein-coupled receptor that probably associates with the patched protein (PTCH) to transduce the hedgehog's proteins signal. Binding of sonic hedgehog (SHH) to its receptor patched is thought to prevent normal inhibition by patched of smoothened (SMO)15 MGI mutant phenotypes (inferred from 5 alleles ) (MGI details for Smo):
3 Gene Ontology (GO) molecular function terms (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0004926 | non-G-protein coupled 7TM receptor activity |
IEA | -- | | GO:0004930 | G-protein coupled receptor activity |
IEA | -- | | GO:0005515 | protein binding |
TAS | 8906787 | About this table | Pathways & Interactions for SMO
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
5/9 Sigma-Aldrich "Your Favorite Gene" Pathways for SMO (Your Favorite Gene powered by Ingenuity) (see all 9
) 
Gene Network CentralTM Interacting Genes and Proteins Network for SMO 
5/32 Interacting proteins for SMO (ENSP000002493733) via UniProtKB, MINT, and/or STRING (see all 32
)About this table
5/18 Gene Ontology (GO) biological process terms (links to tree view) (see all 18
): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0001570 | vasculogenesis |
IEA | -- | | GO:0001649 | osteoblast differentiation |
IEA | -- | | GO:0001755 | neural crest cell migration |
IEA | -- | | GO:0002052 | positive regulation of neuroblast proliferation |
IEA | -- | | GO:0003007 | heart morphogenesis |
IEA | -- | About this table
|
Drugs & Compounds for SMO(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|  |
Enzo Life Sciences drugs & compounds for SMO |
Compounds for SMO available from Tocris Bioscience
| Compound | Action |
CAS
number |
|---|
| SANT-1 | Inhibitor of hedgehog (Hh) signaling; antagonizes smoothened activity | [304909-07-7] | About this table
1 Novoseek chemical compound relationship for SMO gene
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| cyclopamine |
89.82 |
4 |
12391318 (3) |
About this table
|
Transcripts for SMO(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_005631
Sigma-Aldrich siRNA and siRNA Panels for SMO  Sigma-Aldrich shRNA Panels and shRNA for SMO  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_005631 REFSEQ mRNAs for SMO gene: NM_005631.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_005631               OriGene GFP tagged cDNA clone in CMV expression vector: NM_005631                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_005631                                  untagged cDNA clone in CMV expression vector: NM_005631  Additional cDNA sequence: AF071494.1 AF089720.1 AF120103.1 AF130867.1 BC004332.1 BC009989.2 U84401.1 6 DOTS entries: DT.313365 DT.121054058 DT.95371710 DT.121054063 DT.75121134 DT.86853388 24/101 AceView cDNA sequences (see all 101
):AW614083 AI081895 NM_005631 BC009989 BM725012 U84401 AF071494 BE785546 AU132302 BX641825 BE784306 AW593101 H98971 AF120103 BM714878 R71695 BU726335 AI820024 BM680230 BV182837 AI885759 AI422943 CA445076 AI140041
highest scoring ESTs for SMO:U84401 AA070437 AA377764 AA448522 AA524933 AA738463 AF065155 AF071494 AF120103 AF130867 Unigene Cluster for SMO: Smoothened homolog (Drosophila) Hs.437846 [show with all ESTs]Unigene Representative Sequence: NM_005631
GeneLoc Exon Structure
3 Alternative Splicing Database (ASD) splice patterns (SP) for SMO
| ExUns: | 1 | ^ | 2 | ^ | 3 | ^ | 4 | ^ | 5a | · | 5b | ^ | 6 | ^ | 7a | · | 7b | ^ | 8 | ^ | 9 | ^ | 10a | · | 10b | ^ | 11 | ^ | 12 | |
| SP1: | |   | |   | |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | |   | |   | |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for SMO
1 Ensembl transcript including schematic representation: ENST00000249373
|
Expression for SMO
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| SMO expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for SMO
1 / 2 / 3 4 probe-sets matching SMO gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: TTCCCAAGGC
SOURCE GeneReport for Unigene cluster: Hs.437846
Expression variation in blood from EXPOLDB for SMO |
Orthologs for SMO
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for SMO gene from 5/10 species (see all 10
)
About this table Species with no ortholog for SMO
ENSEMBL Gene Tree for SMO | Paralogs for SMO(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for SMO gene
- SFRP12 SFRP52 SFRP22
|
SNPs/Variants for SMO(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for SMO (up to first 250kb)
|
Disorders & Mutations for SMO
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 601500 UniProtKB/Swiss-Prot: SMO_HUMAN, Q99835
Defects in SMO are involved in basal cell carcinoma (BCC)7 Novoseek disease relationships for SMO gene
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| carcinoma basal cell |
73.53 |
6 |
11133163 (1), 9581815 (1), 14634745 (1), 17214858 (1) (see all 6) |
| medulloblastoma |
56.90 |
3 |
18288402 (2), 18502968 (1) |
| somatic mutations |
43.71 |
3 |
17332280 (1), 15488029 (1), 15656799 (1) |
| pancreatic cancer |
31.70 |
4 |
16804411 (2), 16826192 (2) |
| tumors |
26.51 |
26 |
12241103 (3), 16804411 (2), 10504535 (2), 16339184 (2) (see all 9) |
| cancer |
3.17 |
2 |
19304771 (1) |
| carcinoma |
0.00 |
1 |
16330160 (1) |
About this table
Human Genome Epidemiology Navigator: SMO (4 documents)
|
Medical News for SMO(Possibly Related Articles in
Doctor's Guide)
About This Section
| |
Publications for SMO (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/60 PubMed articles for SMO gene (see all 60
):- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- Activating Smoothened mutations in sporadic basal-cell carcinoma. (PubMed id 9422511)3, 4 Xie J....de Sauvage F.J. (1998)
- Chromosomal localization of the human smoothened gene (SMOH) to 7q32. 3 by fluorescence in situ hybridization and radiation hybrid mapping. (PubMed id 9628830)2, 3 Sublett J.E....Reardon D.A. (1998)
- The tumour-suppressor gene patched encodes a candidate receptor for Sonic hedgehog. (PubMed id 8906787)3, 4 Stone D.M.... Rosenthal A. (1996)
- PTCH1 and SMO gene alterations in keratocystic odontogenic tumors. (PubMed id 18502968)1, 3 Sun L.S....Li T.J. (2008)
- Aberrant expression of PTCH (patched gene) and Smo (smoothened gene) in human pancreatic cancerous tissues and its association with hyperglycemia. (PubMed id 16804411)1, 3 Shao J....Chen Z. (2006)
- Missense mutations in SMOH in sporadic basal cell carcinomas of the skin and primitive neuroectodermal tumors of the central nervous system. (PubMed id 9581815)1, 3 Reifenberger J....Reifenberger G. (1998)
- Patched and smoothened mRNA expression in human astrocytic tumors inversely correlates with histological malignancy. (PubMed id 12241103)1, 3 Katayam M....Kamiguchi H. (2002)
- Dysregulation of the Hedgehog pathway in human hepatocarcinogenesis. (PubMed id 16339184)1, 3 Sicklick J.K....Diehl A.M. (2006)
- PTCH gene mutations in invasive transitional cell carcinoma of the bladder. (PubMed id 9764827)1, 3 McGarvey T.W....Malkowicz S.B. (1998)
|
Search for SMO
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing SMO
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing SMO
(According to HUGE)
About This Section
| -- |
Specialized Databases showing SMO(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for SMO(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for SMO:

 | |
 | | | | |
|
 |  |  |
| | | | Tocris compounds for SMO |
|
 |
 | | | Antibodies for SMO |
| |
GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009
|