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Aliases for SMKR1 Gene

Aliases for SMKR1 Gene

  • Small Lysine-Rich Protein 1 2 3 5

External Ids for SMKR1 Gene

Previous GeneCards Identifiers for SMKR1 Gene

  • GC07P129145

Summaries for SMKR1 Gene

GeneCards Summary for SMKR1 Gene

SMKR1 (Small Lysine-Rich Protein 1) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SMKR1 Gene

Genomics for SMKR1 Gene

Regulatory Elements for SMKR1 Gene

Enhancers for SMKR1 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around SMKR1 on UCSC Golden Path with GeneCards custom track

Promoters for SMKR1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around SMKR1 on UCSC Golden Path with GeneCards custom track

Genomic Location for SMKR1 Gene

Chromosome:
7
Start:
129,502,479 bp from pter
End:
129,512,932 bp from pter
Size:
10,454 bases
Orientation:
Plus strand

Genomic View for SMKR1 Gene

Genes around SMKR1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SMKR1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SMKR1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SMKR1 Gene

Proteins for SMKR1 Gene

  • Protein details for SMKR1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    H3BMG3-SMKR1_HUMAN
    Recommended name:
    Small lysine-rich protein 1
    Protein Accession:
    H3BMG3

    Protein attributes for SMKR1 Gene

    Size:
    65 amino acids
    Molecular mass:
    7091 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SMKR1 Gene

Proteomics data for SMKR1 Gene at MOPED

Post-translational modifications for SMKR1 Gene

No Post-translational modifications

Other Protein References for SMKR1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for SMKR1 Gene

Domains & Families for SMKR1 Gene

Protein Domains for SMKR1 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SMKR1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SMKR1 Gene

Function for SMKR1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for SMKR1 Gene

Localization for SMKR1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SMKR1 Gene

Pathways & Interactions for SMKR1 Gene

SuperPathways for SMKR1 Gene

No Data Available

Interacting Proteins for SMKR1 Gene

Gene Ontology (GO) - Biological Process for SMKR1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SMKR1 Gene

Drugs & Compounds for SMKR1 Gene

No Compound Related Data Available

Transcripts for SMKR1 Gene

mRNA/cDNA for SMKR1 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SMKR1 Gene

Small lysine-rich protein 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SMKR1 Gene

No ASD Table

Relevant External Links for SMKR1 Gene

GeneLoc Exon Structure for
SMKR1
ECgene alternative splicing isoforms for
SMKR1

Expression for SMKR1 Gene

mRNA expression in normal human tissues for SMKR1 Gene

mRNA differential expression in normal tissues according to GTEx for SMKR1 Gene

This gene is overexpressed in Testis (x30.4).

SOURCE GeneReport for Unigene cluster for SMKR1 Gene Hs.178144

genes like me logo Genes that share expression patterns with SMKR1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for SMKR1 Gene

Orthologs for SMKR1 Gene

This gene was present in the common ancestor of mammals.

Orthologs for SMKR1 Gene

Organism Taxonomy Gene Similarity Type Details
platypus
(Ornithorhynchus anatinus)
Mammalia SMKR1 36
  • 46 (a)
OneToOne
Species with no ortholog for SMKR1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SMKR1 Gene

ENSEMBL:
Gene Tree for SMKR1 (if available)
TreeFam:
Gene Tree for SMKR1 (if available)

Paralogs for SMKR1 Gene

No data available for Paralogs for SMKR1 Gene

Variants for SMKR1 Gene

Sequence variations from dbSNP and Humsavar for SMKR1 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs822044 -- 129,510,531(+) gagtt(G/T)aagac intron-variant
rs1094473 -- 129,510,552(+) aacat(A/G)gcgaa intron-variant
rs1136524 -- 129,512,258(+) AAAGG(A/G)AAAAA reference, synonymous-codon
rs1248452 -- 129,500,867(+) TGGAT(C/G)TCTGA upstream-variant-2KB
rs1248453 -- 129,501,900(+) AATGA(C/T)CAGTC upstream-variant-2KB

Variation tolerance for SMKR1 Gene

Gene Damage Index Score: 2.15; 39.08% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Relevant External Links for SMKR1 Gene

Disorders for SMKR1 Gene

Relevant External Links for SMKR1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SMKR1

No disorders were found for SMKR1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SMKR1 Gene

Publications for SMKR1 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4 67

Products for SMKR1 Gene

Sources for SMKR1 Gene

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