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Aliases for SMIM9 Gene

Aliases for SMIM9 Gene

  • Small Integral Membrane Protein 9 2 3
  • CXorf68 3 4
  • Chromosome X Open Reading Frame 68 2

External Ids for SMIM9 Gene

Previous Symbols for SMIM9 Gene

  • CXorf68

Summaries for SMIM9 Gene

GeneCards Summary for SMIM9 Gene

SMIM9 (Small Integral Membrane Protein 9) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SMIM9 Gene

Genomics for SMIM9 Gene

Genomic Location for SMIM9 Gene

Start:
154,823,348 bp from pter
End:
154,834,662 bp from pter
Size:
11,315 bases
Orientation:
Minus strand

Genomic View for SMIM9 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SMIM9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SMIM9 Gene

No data available for Regulatory Elements for SMIM9 Gene

Proteins for SMIM9 Gene

  • Protein details for SMIM9 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A6NGZ8-SMIM9_HUMAN
    Recommended name:
    Small integral membrane protein 9
    Protein Accession:
    A6NGZ8
    Secondary Accessions:

    Protein attributes for SMIM9 Gene

    Size:
    99 amino acids
    Molecular mass:
    10777 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SMIM9 Gene

Proteomics data for SMIM9 Gene at MOPED

Post-translational modifications for SMIM9 Gene

No Post-translational modifications

Other Protein References for SMIM9 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for SMIM9 Gene

Domains for SMIM9 Gene

Protein Domains for SMIM9 Gene

ProtoNet:
genes like me logo Genes that share domains with SMIM9: view

No data available for Gene Families and UniProtKB/Swiss-Prot for SMIM9 Gene

Function for SMIM9 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SMIM9 Gene

Localization for SMIM9 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SMIM9 Gene

Cell membrane; Single-pass type I membrane protein.

Gene Ontology (GO) - Cellular Components for SMIM9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005886 plasma membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with SMIM9: view

Pathways for SMIM9 Gene

SuperPathways for SMIM9 Gene

No Data Available

Interacting Proteins for SMIM9 Gene

Gene Ontology (GO) - Biological Process for SMIM9 Gene

None

No data available for Pathways by source for SMIM9 Gene

Transcripts for SMIM9 Gene

mRNA/cDNA for SMIM9 Gene

(1) REFSEQ mRNAs :
(0) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SMIM9 Gene

Small integral membrane protein 9:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SMIM9 Gene

No ASD Table

Relevant External Links for SMIM9 Gene

GeneLoc Exon Structure for
SMIM9
ECgene alternative splicing isoforms for
SMIM9

Expression for SMIM9 Gene

mRNA expression in normal human tissues for SMIM9 Gene

mRNA differential expression in normal tissues according to GTEx for SMIM9 Gene

This gene is overexpressed in Testis (20.5) and Heart - Left Ventricle (4.3).

SOURCE GeneReport for Unigene cluster for SMIM9 Gene Hs.220762

genes like me logo Genes that share expressions with SMIM9: view

Orthologs for SMIM9 Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for SMIM9 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia SMIM9 36
  • 98.99 (n)
  • 96.97 (a)
SMIM9 37
  • 97 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Smim9 16
Species with no ortholog for SMIM9:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SMIM9 Gene

ENSEMBL:
Gene Tree for SMIM9 (if available)
TreeFam:
Gene Tree for SMIM9 (if available)

Paralogs for SMIM9 Gene

No data available for Paralogs for SMIM9 Gene

Variants for SMIM9 Gene

Sequence variations from dbSNP and Humsavar for SMIM9 Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type MAF
rs1396947 -- 154,836,305(-) TGGAG(A/G)CAAGG upstream-variant-2KB
rs4898397 -- 154,834,156(+) TGAGG(G/T)GAAGT intron-variant
rs5904395 -- 154,826,965(+) CTTGC(-/C)TATAT intron-variant
rs5945117 -- 154,828,828(+) ACTTT(C/T)ATTAG intron-variant
rs5945248 -- 154,825,253(+) tgggc(A/G)tggtg intron-variant

Relevant External Links for SMIM9 Gene

HapMap Linkage Disequilibrium report
SMIM9

No data available for Structural Variations from Database of Genomic Variants (DGV) for SMIM9 Gene

Disorders for SMIM9 Gene

No disorders were found for SMIM9 Gene.

No data available for UniProtKB/Swiss-Prot for SMIM9 Gene

Publications for SMIM9 Gene

  1. The DNA sequence of the human X chromosome. (PMID: 15772651) Ross M.T. … Bentley D.R. (Nature 2005) 3 4
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  3. The sequence of the human genome. (PMID: 11181995) Venter J.C. … Zhu X. (Science 2001) 3
  4. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington J.J. … Ducar M. (Nat. Biotechnol. 2001) 3

Products for SMIM9 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate SMIM9
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for SMIM9
    • Block miRNA regulation of SMIM9 using miScript Target Protectors

    Sources for SMIM9 Gene

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