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Aliases for SMIM6 Gene

Aliases for SMIM6 Gene

  • Small Integral Membrane Protein 6 2 3
  • C17orf110 3 4
  • Chromosome 17 Open Reading Frame 110 2

External Ids for SMIM6 Gene

Previous Symbols for SMIM6 Gene

  • C17orf110

Summaries for SMIM6 Gene

GeneCards Summary for SMIM6 Gene

SMIM6 (Small Integral Membrane Protein 6) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SMIM6 Gene

Genomics for SMIM6 Gene

Genomic Location for SMIM6 Gene

Start:
75,646,195 bp from pter
End:
75,647,977 bp from pter
Size:
1,783 bases
Orientation:
Plus strand

Genomic View for SMIM6 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for SMIM6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SMIM6 Gene

No data available for Regulatory Elements for SMIM6 Gene

Proteins for SMIM6 Gene

  • Protein details for SMIM6 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P0DI80-SMIM6_HUMAN
    Recommended name:
    Small integral membrane protein 6
    Protein Accession:
    P0DI80
    Secondary Accessions:

    Protein attributes for SMIM6 Gene

    Size:
    62 amino acids
    Molecular mass:
    7017 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SMIM6 Gene

Proteomics data for SMIM6 Gene at MOPED

Post-translational modifications for SMIM6 Gene

No Post-translational modifications

Other Protein References for SMIM6 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for SMIM6 Gene

Domains for SMIM6 Gene

Protein Domains for SMIM6 Gene

ProtoNet:
genes like me logo Genes that share domains with SMIM6: view

No data available for Gene Families and UniProtKB/Swiss-Prot for SMIM6 Gene

Function for SMIM6 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for SMIM6 Gene

Localization for SMIM6 Gene

Subcellular locations from UniProtKB/Swiss-Prot for SMIM6 Gene

Membrane; Single-pass membrane protein.

Gene Ontology (GO) - Cellular Components for SMIM6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with SMIM6: view

Pathways for SMIM6 Gene

SuperPathways for SMIM6 Gene

No Data Available

Interacting Proteins for SMIM6 Gene

Gene Ontology (GO) - Biological Process for SMIM6 Gene

None

No data available for Pathways by source for SMIM6 Gene

Transcripts for SMIM6 Gene

mRNA/cDNA for SMIM6 Gene

(2) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SMIM6 Gene

Small integral membrane protein 6:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SMIM6 Gene

No ASD Table

Relevant External Links for SMIM6 Gene

GeneLoc Exon Structure for
SMIM6
ECgene alternative splicing isoforms for
SMIM6

Expression for SMIM6 Gene

mRNA expression in normal human tissues for SMIM6 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for SMIM6 Gene

This gene is overexpressed in Testis (11.6), Stomach (7.4), and Kidney - Cortex (7.2).

SOURCE GeneReport for Unigene cluster for SMIM6 Gene Hs.662541

genes like me logo Genes that share expressions with SMIM6: view

Orthologs for SMIM6 Gene

This gene was present in the common ancestor of mammals.

Orthologs for SMIM6 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C17H17orf110 36
  • 100 (n)
  • 100 (a)
cow
(Bos Taurus)
Mammalia SMIM6 37
  • 56 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Smim6 16
Species with no ortholog for SMIM6:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for SMIM6 Gene

ENSEMBL:
Gene Tree for SMIM6 (if available)
TreeFam:
Gene Tree for SMIM6 (if available)

Paralogs for SMIM6 Gene

No data available for Paralogs for SMIM6 Gene

Variants for SMIM6 Gene

Relevant External Links for SMIM6 Gene

HapMap Linkage Disequilibrium report
SMIM6

No data available for Sequence variations from dbSNP and Humsavar and Structural Variations from Database of Genomic Variants (DGV) for SMIM6 Gene

Disorders for SMIM6 Gene

No disorders were found for SMIM6 Gene.

No data available for UniProtKB/Swiss-Prot for SMIM6 Gene

Publications for SMIM6 Gene

  1. The sequence of the human genome. (PMID: 11181995) Venter J.C. … Zhu X. (Science 2001) 3
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 4
  4. DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage. (PMID: 16625196) Zody M.C. … Nusbaum C. (Nature 2006) 4

Products for SMIM6 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate SMIM6
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for SMIM6
    • Block miRNA regulation of SMIM6 using miScript Target Protectors

    Sources for SMIM6 Gene

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