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Aliases for SMIM35 Gene

Aliases for SMIM35 Gene

  • Small Integral Membrane Protein 35 2 3
  • TMPRSS4 Antisense RNA 1 2 3 5
  • TMPRSS4 Antisense RNA 1 (Non-Protein Coding) 2 3
  • TMPRSS4-AS1 3 5

External Ids for SMIM35 Gene

Previous HGNC Symbols for SMIM35 Gene

  • TMPRSS4-AS1

Summaries for SMIM35 Gene

GeneCards Summary for SMIM35 Gene

SMIM35 (Small Integral Membrane Protein 35) is a Protein Coding gene.

Additional gene information for SMIM35 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SMIM35 Gene

Genomics for SMIM35 Gene

Regulatory Elements for SMIM35 Gene

Enhancers for SMIM35 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11H118082 1.3 Ensembl ENCODE dbSUPER 0.7 +4.4 4357 2 RARA NR2F2 ZNF217 NFIL3 SMARCA4 CEBPA ETV4 NR2C1 KDM1A MYC SCN4B TMPRSS13 IL10RA JAML SMIM35 TMPRSS4
GH11H118091 1.1 ENCODE dbSUPER 0.7 -4.2 -4151 2 HDAC1 SOX13 DMAP1 ZNF644 THRB RARA NCOR1 NR2F6 CREM SOX5 CD3E SCN4B SMIM35 LOC105369517
GH11H118088 1 ENCODE dbSUPER 0.7 -0.4 -435 1 ELF3 FOXA2 SIN3A MAX RARA TEAD3 CTBP1 POLR2A FOSL2 FOS CD3E SCN4B SMIM35 LOC105369517
GH11H118074 1.1 ENCODE dbSUPER 0.4 +10.9 10916 5 SIX4 PKNOX1 KLF1 NFIB MAX ZBTB7B E2F1 ZFHX2 CTBP1 GATA3 ENSG00000245869 LOC653303 RNF214 SCN4B LOC101929089 TMPRSS13 TMPRSS4 SMIM35
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SMIM35 on UCSC Golden Path with GeneCards custom track

Genomic Location for SMIM35 Gene

Chromosome:
11
Start:
118,003,634 bp from pter
End:
118,088,299 bp from pter
Size:
84,666 bases
Orientation:
Minus strand

Genomic View for SMIM35 Gene

Genes around SMIM35 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SMIM35 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SMIM35 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SMIM35 Gene

Proteins for SMIM35 Gene

  • Protein details for SMIM35 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A1B0GVV1
    Recommended name:
    TMPRSS4 antisense RNA 1
    Protein Accession:
    A0A1B0GVV1

    Protein attributes for SMIM35 Gene

    Size:
    85 amino acids
    Molecular mass:
    9379 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SMIM35 Gene

Post-translational modifications for SMIM35 Gene

No Post-translational modifications

Other Protein References for SMIM35 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for SMIM35 Gene

Domains & Families for SMIM35 Gene

Protein Domains for SMIM35 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SMIM35: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SMIM35 Gene

Function for SMIM35 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SMIM35 Gene

Localization for SMIM35 Gene

Gene Ontology (GO) - Cellular Components for SMIM35 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with SMIM35: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for SMIM35 Gene

Pathways & Interactions for SMIM35 Gene

SuperPathways for SMIM35 Gene

No Data Available

Interacting Proteins for SMIM35 Gene

Gene Ontology (GO) - Biological Process for SMIM35 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SMIM35 Gene

Drugs & Compounds for SMIM35 Gene

No Compound Related Data Available

Transcripts for SMIM35 Gene

mRNA/cDNA for SMIM35 Gene

(1) REFSEQ mRNAs :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SMIM35 Gene

No ASD Table

Relevant External Links for SMIM35 Gene

GeneLoc Exon Structure for
SMIM35
ECgene alternative splicing isoforms for
SMIM35

Expression for SMIM35 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SMIM35 Gene

Orthologs for SMIM35 Gene

Evolution for SMIM35 Gene

ENSEMBL:
Gene Tree for SMIM35 (if available)
TreeFam:
Gene Tree for SMIM35 (if available)

No data available for Orthologs for SMIM35 Gene

Paralogs for SMIM35 Gene

No data available for Paralogs for SMIM35 Gene

Variants for SMIM35 Gene

Sequence variations from dbSNP and Humsavar for SMIM35 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs1000065514 -- 118,053,717(+) AGTCC(C/T)ACCAT intron-variant
rs1000080854 -- 118,051,853(+) TAATA(C/T)TAATA intron-variant
rs1000118854 -- 118,047,582(+) TCAGA(G/T)GATCC intron-variant
rs1000121025 -- 118,075,841(+) CCACA(C/G)AATGG intron-variant, upstream-variant-2KB
rs1000127429 -- 118,024,684(+) ACCAG(A/G)CTGGT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SMIM35 Gene

Variant ID Type Subtype PubMed ID
esv3579922 CNV loss 25503493
esv3892103 CNV gain 25118596
esv998313 CNV insertion 20482838
nsv1049373 CNV loss 25217958
nsv1159938 CNV duplication 26073780
nsv468878 CNV gain 19166990
nsv509444 CNV insertion 20534489
nsv556463 CNV loss 21841781
nsv556464 CNV gain 21841781

Relevant External Links for SMIM35 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SMIM35

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SMIM35 Gene

Disorders for SMIM35 Gene

Relevant External Links for SMIM35

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SMIM35
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SMIM35

No disorders were found for SMIM35 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SMIM35 Gene

Publications for SMIM35 Gene

No publications were found for SMIM35 Gene.

Products for SMIM35 Gene

Sources for SMIM35 Gene

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