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Aliases for SMIM27 Gene

Aliases for SMIM27 Gene

  • Small Integral Membrane Protein 27 2 3
  • TOPORS Antisense RNA 1 2 3 5
  • TOPORS Antisense RNA 1 (Non-Protein Coding) 2 3
  • TOPORS-AS1 3 5
  • Chromosome 9 Open Reading Frame 133 2
  • C9orf133 3

External Ids for SMIM27 Gene

Previous HGNC Symbols for SMIM27 Gene

  • C9orf133
  • TOPORS-AS1

Summaries for SMIM27 Gene

GeneCards Summary for SMIM27 Gene

SMIM27 (Small Integral Membrane Protein 27) is a Protein Coding gene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SMIM27 Gene

Genomics for SMIM27 Gene

Regulatory Elements for SMIM27 Gene

Enhancers for SMIM27 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09G032404 0.8 ENCODE dbSUPER 12 -146.2 -146239 0.8 TAF1 MAX HNF4A YY1 TOPORS DDX58 SMIM27 ACO1 LOC105376014
GH09G032550 1.4 ENCODE dbSUPER 0.7 +1.3 1278 5.1 HDGF PKNOX1 CREB3L1 MLX WRNIP1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 GVQW1 NDUFB6 DDX58 NFX1 TOPORS SMIM27
GH09G032549 0.2 Ensembl 0.7 -1.6 -1644 0.2 SMIM27 GC09P032548
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SMIM27 on UCSC Golden Path with GeneCards custom track

Promoters for SMIM27 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000234298 656 3600 HDGF PKNOX1 CREB3L1 MLX WRNIP1 ZFP64 ARID4B SIN3A DMAP1 ZNF2

Genomic Location for SMIM27 Gene

Chromosome:
9
Start:
32,551,144 bp from pter
End:
32,567,005 bp from pter
Size:
15,862 bases
Orientation:
Plus strand

Genomic View for SMIM27 Gene

Genes around SMIM27 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SMIM27 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SMIM27 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SMIM27 Gene

Proteins for SMIM27 Gene

  • Protein details for SMIM27 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A1B0GTY6
    Recommended name:
    TOPORS antisense RNA 1
    Protein Accession:
    A0A1B0GTY6

    Protein attributes for SMIM27 Gene

    Size:
    35 amino acids
    Molecular mass:
    3781 Da
    Quaternary structure:
    No Data Available
  • Protein details for SMIM27 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A1B0GUW7
    Recommended name:
    TOPORS antisense RNA 1
    Protein Accession:
    A0A1B0GUW7

    Protein attributes for SMIM27 Gene

    Size:
    55 amino acids
    Molecular mass:
    6429 Da
    Quaternary structure:
    No Data Available
  • Protein details for SMIM27 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A1B0GV65
    Recommended name:
    TOPORS antisense RNA 1
    Protein Accession:
    A0A1B0GV65

    Protein attributes for SMIM27 Gene

    Size:
    37 amino acids
    Molecular mass:
    4281 Da
    Quaternary structure:
    No Data Available
  • Protein details for SMIM27 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A1B0GW09
    Recommended name:
    TOPORS antisense RNA 1
    Protein Accession:
    A0A1B0GW09

    Protein attributes for SMIM27 Gene

    Size:
    52 amino acids
    Molecular mass:
    6072 Da
    Quaternary structure:
    No Data Available

neXtProt entry for SMIM27 Gene

Post-translational modifications for SMIM27 Gene

No Post-translational modifications

Other Protein References for SMIM27 Gene

No data available for DME Specific Peptides for SMIM27 Gene

Domains & Families for SMIM27 Gene

Protein Domains for SMIM27 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with SMIM27: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SMIM27 Gene

Function for SMIM27 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SMIM27 Gene

Localization for SMIM27 Gene

Gene Ontology (GO) - Cellular Components for SMIM27 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with SMIM27: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from COMPARTMENTS for SMIM27 Gene

Pathways & Interactions for SMIM27 Gene

SuperPathways for SMIM27 Gene

No Data Available

Interacting Proteins for SMIM27 Gene

Gene Ontology (GO) - Biological Process for SMIM27 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SMIM27 Gene

Drugs & Compounds for SMIM27 Gene

No Compound Related Data Available

Transcripts for SMIM27 Gene

mRNA/cDNA for SMIM27 Gene

(2) REFSEQ mRNAs :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for SMIM27 Gene

No ASD Table

Relevant External Links for SMIM27 Gene

GeneLoc Exon Structure for
SMIM27
ECgene alternative splicing isoforms for
SMIM27

Expression for SMIM27 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SMIM27 Gene

Orthologs for SMIM27 Gene

Evolution for SMIM27 Gene

ENSEMBL:
Gene Tree for SMIM27 (if available)
TreeFam:
Gene Tree for SMIM27 (if available)

No data available for Orthologs for SMIM27 Gene

Paralogs for SMIM27 Gene

No data available for Paralogs for SMIM27 Gene

Variants for SMIM27 Gene

Sequence variations from dbSNP and Humsavar for SMIM27 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs112527210 Likely benign 32,550,914(+) AGGCG(A/G)GGGCG intron-variant, upstream-variant-2KB, reference, missense
rs15014 Likely benign 32,552,464(-) ATCCA(C/G)TCCAG nc-transcript-variant, utr-variant-5-prime
rs61758066 Likely benign 32,550,898(+) CCTCC(A/C/G)AAGCG intron-variant, upstream-variant-2KB, reference, missense
rs187268836 Uncertain significance 32,552,608(+) CACCT(C/T)GACTC intron-variant, utr-variant-5-prime
rs776476617 Uncertain significance 32,552,500(+) CGCGG(A/G)CCCCC intron-variant, utr-variant-5-prime

Structural Variations from Database of Genomic Variants (DGV) for SMIM27 Gene

Variant ID Type Subtype PubMed ID
esv3620302 CNV gain 21293372
nsv831540 CNV gain 17160897

Relevant External Links for SMIM27 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SMIM27

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SMIM27 Gene

Disorders for SMIM27 Gene

Relevant External Links for SMIM27

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SMIM27

No disorders were found for SMIM27 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SMIM27 Gene

Publications for SMIM27 Gene

  1. Genome-wide analysis of polymorphisms associated with cytokine responses in smallpox vaccine recipients. (PMID: 22610502) Kennedy R.B. … Poland G.A. (Hum. Genet. 2012) 3 64
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64

Products for SMIM27 Gene

Sources for SMIM27 Gene

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