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Aliases for SMIM2-IT1 Gene

Subcategory (RNA class) for SMIM2-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for SMIM2-IT1 Gene

  • SMIM2 Intronic Transcript 1 2 3 5
  • SMIM2 Intronic Transcript 1 (Non-Protein Coding) 2 3
  • C13orf44 Intronic Transcript 1 (Non-Protein Coding) 2
  • C13orf44-IT1 3

External Ids for SMIM2-IT1 Gene

Previous HGNC Symbols for SMIM2-IT1 Gene

  • C13orf44-IT1

Previous GeneCards Identifiers for SMIM2-IT1 Gene

  • GC13M044724

Summaries for SMIM2-IT1 Gene

GeneCards Summary for SMIM2-IT1 Gene

SMIM2-IT1 (SMIM2 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SMIM2-IT1 Gene

Genomics for SMIM2-IT1 Gene

Regulatory Elements for SMIM2-IT1 Gene

Enhancers for SMIM2-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13F044300 1.6 FANTOM5 Ensembl ENCODE 10.6 -149.3 -149263 14.8 ZNF2 BRCA1 YY1 CBX5 FOS JUNB GLIS1 STAT3 HMBOX1 KDM1A SERP2 LACC1 CCDC122 SMIM2 SMIM2-IT1 SMIM2-AS1 TSC22D1 GC13M044319 GC13M044260
GH13F044191 1.2 Ensembl ENCODE 12 -33.7 -33685 1.7 NFRKB INSM2 ZNF76 KLF17 ZNF2 RAD21 RARA YY1 GATA4 ZNF366 RN7SL49P CCDC122 SMIM2 SMIM2-IT1 NUFIP1 SMIM2-AS1 TSC22D1 ENSG00000276854
GH13F044292 1.4 FANTOM5 Ensembl ENCODE 10.1 -135.4 -135445 3.2 ESRRA PKNOX1 JUN RAD21 EED ETV6 NR2F6 CREM MTA2 HLF SERP2 SMIM2-IT1 SMIM2 LACC1 CCDC122 GC13M044260 GC13M044319
GH13F044103 1.2 Ensembl ENCODE 11.4 +50.9 50864 7.7 ELF3 PKNOX1 RAD21 RARA YY1 CBX5 RCOR1 FOS CEBPB MIER2 SMIM2-AS1 SMIM2 SMIM2-IT1 TSC22D1 GC13P044070
GH13F044218 1 Ensembl ENCODE 11.6 -61.5 -61533 2.3 FEZF1 RAD21 YY1 SCRT2 HNF4G FOS KLF7 MAFK TCF7L2 NFE2L2 SMIM2 SMIM2-IT1 SMIM2-AS1 GC13P044200 ENSG00000230731
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SMIM2-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Location for SMIM2-IT1 Gene

Chromosome:
13
Start:
44,146,470 bp from pter
End:
44,158,222 bp from pter
Size:
11,753 bases
Orientation:
Minus strand

Genomic View for SMIM2-IT1 Gene

Genes around SMIM2-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SMIM2-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SMIM2-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SMIM2-IT1 Gene

Proteins for SMIM2-IT1 Gene

Post-translational modifications for SMIM2-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SMIM2-IT1 Gene

Domains & Families for SMIM2-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SMIM2-IT1 Gene

Function for SMIM2-IT1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SMIM2-IT1 Gene

Localization for SMIM2-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for SMIM2-IT1 Gene

Pathways & Interactions for SMIM2-IT1 Gene

SuperPathways for SMIM2-IT1 Gene

No Data Available

Interacting Proteins for SMIM2-IT1 Gene

Gene Ontology (GO) - Biological Process for SMIM2-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for SMIM2-IT1 Gene

Transcripts for SMIM2-IT1 Gene

mRNA/cDNA for SMIM2-IT1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SMIM2-IT1 Gene

SMIM2 intronic transcript 1 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for SMIM2-IT1 Gene

No ASD Table

Relevant External Links for SMIM2-IT1 Gene

GeneLoc Exon Structure for
SMIM2-IT1
ECgene alternative splicing isoforms for
SMIM2-IT1

Expression for SMIM2-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for SMIM2-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for SMIM2-IT1 Gene

This gene is overexpressed in Testis (x32.5) and Muscle - Skeletal (x6.6).

SOURCE GeneReport for Unigene cluster for SMIM2-IT1 Gene:

Hs.652552
genes like me logo Genes that share expression patterns with SMIM2-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for SMIM2-IT1 Gene

Orthologs for SMIM2-IT1 Gene

Evolution for SMIM2-IT1 Gene

ENSEMBL:
Gene Tree for SMIM2-IT1 (if available)
TreeFam:
Gene Tree for SMIM2-IT1 (if available)

No data available for Orthologs for SMIM2-IT1 Gene

Paralogs for SMIM2-IT1 Gene

No data available for Paralogs for SMIM2-IT1 Gene

Variants for SMIM2-IT1 Gene

Sequence variations from dbSNP and Humsavar for SMIM2-IT1 Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type
rs10467374 -- 44,152,431(+) CGATG(C/G)CTTGC intron-variant
rs10507526 -- 44,152,536(+) TTTCA(A/G)AAGTT intron-variant
rs10628463 -- 44,150,820(+) CACAC(-/AC/ACAAC/ACAC)CTCTC intron-variant
rs111434269 -- 44,155,533(+) CCCTT(C/G)AAGGG intron-variant
rs111437460 -- 44,157,410(+) GAGAT(G/T)TGGAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SMIM2-IT1 Gene

Variant ID Type Subtype PubMed ID
nsv1048346 CNV gain 25217958

Relevant External Links for SMIM2-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
SMIM2-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SMIM2-IT1 Gene

Disorders for SMIM2-IT1 Gene

Relevant External Links for SMIM2-IT1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
SMIM2-IT1

No disorders were found for SMIM2-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SMIM2-IT1 Gene

Publications for SMIM2-IT1 Gene

No publications were found for SMIM2-IT1 Gene.

Products for SMIM2-IT1 Gene

Sources for SMIM2-IT1 Gene

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