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Aliases for SMIM2-IT1 Gene

Subcategory (RNA class) for SMIM2-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for SMIM2-IT1 Gene

  • SMIM2 Intronic Transcript 1 2 3 5
  • C13orf44 Intronic Transcript 1 (Non-Protein Coding) 2 3
  • SMIM2 Intronic Transcript 1 (Non-Protein Coding) 2 3
  • C13orf44-IT1 3

External Ids for SMIM2-IT1 Gene

Previous HGNC Symbols for SMIM2-IT1 Gene

  • C13orf44-IT1

Previous GeneCards Identifiers for SMIM2-IT1 Gene

  • GC13M044724

Summaries for SMIM2-IT1 Gene

GeneCards Summary for SMIM2-IT1 Gene

SMIM2-IT1 (SMIM2 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for SMIM2-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for SMIM2-IT1 Gene

Genomics for SMIM2-IT1 Gene

Regulatory Elements for SMIM2-IT1 Gene

Enhancers for SMIM2-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13H044300 1.8 FANTOM5 Ensembl ENCODE dbSUPER 10.6 -149.3 -149263 14.8 TBP FOXA2 ZSCAN4 SIN3A BATF BRCA1 RAD21 RFX5 YY1 ZNF366 SERP2 LACC1 GPALPP1 SMIM2 SMIM2-IT1 SMIM2-AS1 CCDC122 TSC22D1 GC13M044319 GC13M044260
GH13H044191 1.4 Ensembl ENCODE dbSUPER 12 -33.7 -33685 1.7 FOXA2 ZSCAN4 NFRKB INSM2 ZNF76 KLF17 ZNF2 RAD21 YY1 ZNF366 SMIM2 SMIM2-IT1 SMIM2-AS1 TSC22D1 ENSG00000276854
GH13H044292 1.5 FANTOM5 Ensembl ENCODE dbSUPER 10.1 -135.2 -135191 2.7 FOSL1 JUND JUN HLF CEBPB CEBPG HNF4A SERP2 SMIM2-IT1 SMIM2 LACC1 CCDC122 GC13M044260 GC13M044319
GH13H044218 1.3 Ensembl ENCODE dbSUPER 11.6 -61.5 -61547 2.3 FOXA2 MAX FEZF1 RAD21 YY1 GATA3 GLI2 ZSCAN5C SCRT2 HNF4G SMIM2 SMIM2-IT1 SMIM2-AS1 GC13P044200 ENSG00000230731
GH13H044103 0.9 ENCODE 11.4 +50.9 50864 7.7 ELF3 PKNOX1 FOXA2 SIN3A BMI1 RAD21 RARA YY1 RCOR1 FOS SMIM2-AS1 SMIM2 SMIM2-IT1 TSC22D1 GC13P044070
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around SMIM2-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for SMIM2-IT1 Gene

Genomic Locations for SMIM2-IT1 Gene
11,753 bases
Minus strand

Genomic View for SMIM2-IT1 Gene

Genes around SMIM2-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
SMIM2-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for SMIM2-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for SMIM2-IT1 Gene

Proteins for SMIM2-IT1 Gene

Post-translational modifications for SMIM2-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for SMIM2-IT1 Gene

Domains & Families for SMIM2-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for SMIM2-IT1 Gene

Function for SMIM2-IT1 Gene

Phenotypes From GWAS Catalog for SMIM2-IT1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for SMIM2-IT1 Gene

Localization for SMIM2-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for SMIM2-IT1 Gene

Pathways & Interactions for SMIM2-IT1 Gene

SuperPathways for SMIM2-IT1 Gene

No Data Available

Interacting Proteins for SMIM2-IT1 Gene

Gene Ontology (GO) - Biological Process for SMIM2-IT1 Gene


No data available for Pathways by source and SIGNOR curated interactions for SMIM2-IT1 Gene

Drugs & Compounds for SMIM2-IT1 Gene

No Compound Related Data Available

Transcripts for SMIM2-IT1 Gene

mRNA/cDNA for SMIM2-IT1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for SMIM2-IT1 Gene

SMIM2 intronic transcript 1 (non-protein coding):
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for SMIM2-IT1 Gene

No ASD Table

Relevant External Links for SMIM2-IT1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for SMIM2-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for SMIM2-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for SMIM2-IT1 Gene

This gene is overexpressed in Testis (x32.5) and Muscle - Skeletal (x6.6).

SOURCE GeneReport for Unigene cluster for SMIM2-IT1 Gene:

genes like me logo Genes that share expression patterns with SMIM2-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for SMIM2-IT1 Gene

Orthologs for SMIM2-IT1 Gene

Evolution for SMIM2-IT1 Gene

Gene Tree for SMIM2-IT1 (if available)
Gene Tree for SMIM2-IT1 (if available)

No data available for Orthologs for SMIM2-IT1 Gene

Paralogs for SMIM2-IT1 Gene

No data available for Paralogs for SMIM2-IT1 Gene

Variants for SMIM2-IT1 Gene

Sequence variations from dbSNP and Humsavar for SMIM2-IT1 Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type
rs1000463019 -- 44,155,442(+) TCTTT(C/T)CTCAT intron-variant
rs1000797890 -- 44,150,470(+) ATGGT(A/C)TGTTT intron-variant
rs1000829921 -- 44,159,899(+) TGCCA(C/G)TTGGA intron-variant, upstream-variant-2KB
rs1001007641 -- 44,152,635(+) CCTAC(A/T)CTCCA intron-variant
rs1001350159 -- 44,157,266(+) AAAAA(C/T)GGAGA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for SMIM2-IT1 Gene

Variant ID Type Subtype PubMed ID
nsv1048346 CNV gain 25217958

Relevant External Links for SMIM2-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for SMIM2-IT1 Gene

Disorders for SMIM2-IT1 Gene

Relevant External Links for SMIM2-IT1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for SMIM2-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for SMIM2-IT1 Gene

Publications for SMIM2-IT1 Gene

No publications were found for SMIM2-IT1 Gene.

Products for SMIM2-IT1 Gene

Sources for SMIM2-IT1 Gene

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